NO24G02110, NO24G02110 (gene) Nannochloropsis oceanica

Overview
NameNO24G02110
Unique NameNO24G02110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3623
Alignment locationchr24:562006..565628 -

Link to JBrowse

Properties
Property NameValue
DescriptionProteasome subunit
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:562006..565628 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0008537proteasome activator complex
Vocabulary: INTERPRO
TermDefinition
IPR036252Proteasome_activ_sf
IPR009077Proteasome_activ_pa28
IPR003186Proteasome_activ_pa28_C
Homology
BLAST of NO24G02110 vs. NCBI_GenBank
Match: XP_003741715.1 (PREDICTED: proteasome activator complex subunit 3-like [Galendromus occidentalis])

HSP 1 Score: 94.7 bits (234), Expect = 4.200e-16
Identity = 45/136 (33.09%), Postives = 86/136 (63.24%), Query Frame = 0
Query:  103 VHVNPEVFALFQRVKGLVLRLVEDLGVLKLFVRLASPAIADG-SFNSSVQEDVLEVISSSRSAGLMVLQHICKYFLERAHYVVKSKRYPLVSDFRKAVEQMDKQQILSLSESVMGIRNSYLLIHDKITKNQDRLKQ 238
            V +N  +  LF+  K L+++ + D  +LK+++ L+ P + DG +F   +QE+ L+ +SS+ S   + L    +Y++ RA  +VK  +YP V D+RK +E++D++Q +++   V  + N+Y  IHD +TKN +++K+
Sbjct:  122 VKLNQTLTKLFEITKPLIVQQINDCNLLKMWIELSIPKVEDGNNFGVDIQEECLKEVSSAESEAALYLDQPARYYMSRAKMIVKLAKYPHVEDYRKTIEELDEKQYMNVKLVVRELFNNYAAIHDMLTKNLEKIKR 257          
BLAST of NO24G02110 vs. NCBI_GenBank
Match: XP_017487859.1 (PREDICTED: proteasome activator complex subunit 3-like [Rhagoletis zephyria])

HSP 1 Score: 93.2 bits (230), Expect = 1.200e-15
Identity = 53/135 (39.26%), Postives = 79/135 (58.52%), Query Frame = 0
Query:  103 VHVNPEVFALFQRVKGLVLRLVEDLGVLKLFVRLASPAIADG-SFNSSVQEDVLEVISSSRSAGLMVLQHICKYFLERAHYVVKSKRYPLVSDFRKAVEQMDKQQILSLSESVMGIRNSYLLIHDKITKNQDRLK 237
            V  N  + AL   VK L+ +LVED  +LK+++    P I DG +F  S+QED L  I +  +        + +YFL RA  V K  +YP V DFR+ VE++D+++ LSL   V  +RN Y  +HD +TKN +++K
Sbjct:  122 VPCNKNIVALIDIVKPLIRQLVEDSNLLKMWILFLIPRIEDGNNFGVSIQEDTLGEIRTVEAEASAYFDQMSRYFLGRAKIVTKIAKYPHVEDFRRNVEEIDEKEFLSLRLIVAELRNHYASLHDIVTKNLEKIK 256          
BLAST of NO24G02110 vs. NCBI_GenBank
Match: PRD34858.1 (Proteasome activator complex subunit 3 [Nephila clavipes])

HSP 1 Score: 93.2 bits (230), Expect = 1.200e-15
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 0
Query:  106 NPEVFALFQRVKGLVLRLVEDLGVLKLFVRLASPAIADG-SFNSSVQEDVLEVISSSRSAGLMVLQHICKYFLERAHYVVKSKRYPLVSDFRKAVEQMDKQQILSLSESVMGIRNSYLLIHDKITKNQDRLKQ 238
            N  + A+ + VK  + +LVED  VLK++++   P I DG +F  S+QED L  I +  S        I +YFL R   V K  +YP V DFR+ V ++D+++ LS+   +  +RN Y  +HD ITKN +++K+
Sbjct:   74 NSHIVAVVELVKPRIQQLVEDANVLKMWIQFLIPRIEDGNNFGVSIQEDTLGEIRTVESEAAAYFDQISRYFLTRGKIVSKVAKYPHVDDFRRTVSELDEKEFLSMRLIICELRNHYATLHDLITKNLEKIKK 206          
BLAST of NO24G02110 vs. NCBI_GenBank
Match: KXJ76000.1 (hypothetical protein RP20_CCG010543 [Aedes albopictus])

HSP 1 Score: 92.8 bits (229), Expect = 1.600e-15
Identity = 50/136 (36.76%), Postives = 80/136 (58.82%), Query Frame = 0
Query:  103 VHVNPEVFALFQRVKGLVLRLVEDLGVLKLFVRLASPAIADG-SFNSSVQEDVLEVISSSRSAGLMVLQHICKYFLERAHYVVKSKRYPLVSDFRKAVEQMDKQQILSLSESVMGIRNSYLLIHDKITKNQDRLKQ 238
            VH N  +  L + VK ++  LVED  +LK+++    P I DG +F  S+QED L  I S  +        I +YF+ RA  V K  +YP + D+R+AV+++D+++ LSL   +  +RN Y  +HD + KN ++LK+
Sbjct:    8 VHCNTPICDLIKVVKPVIRALVEDSNLLKMWISFMIPKIEDGNNFGVSIQEDTLAEIQSVETEAAAFFDQISRYFVSRAKVVSKVAKYPHIDDYRRAVQELDEKEFLSLWLVLSEVRNRYCSLHDIVIKNMEKLKK 143          
BLAST of NO24G02110 vs. NCBI_GenBank
Match: XP_019558824.1 (PREDICTED: proteasome activator complex subunit 3 [Aedes albopictus] >XP_019563153.1 PREDICTED: proteasome activator complex subunit 3 [Aedes albopictus])

HSP 1 Score: 92.8 bits (229), Expect = 1.600e-15
Identity = 50/136 (36.76%), Postives = 80/136 (58.82%), Query Frame = 0
Query:  103 VHVNPEVFALFQRVKGLVLRLVEDLGVLKLFVRLASPAIADG-SFNSSVQEDVLEVISSSRSAGLMVLQHICKYFLERAHYVVKSKRYPLVSDFRKAVEQMDKQQILSLSESVMGIRNSYLLIHDKITKNQDRLKQ 238
            VH N  +  L + VK ++  LVED  +LK+++    P I DG +F  S+QED L  I S  +        I +YF+ RA  V K  +YP + D+R+AV+++D+++ LSL   +  +RN Y  +HD + KN ++LK+
Sbjct:  107 VHCNTPICDLIKVVKPVIRALVEDSNLLKMWISFMIPKIEDGNNFGVSIQEDTLAEIQSVETEAAAFFDQISRYFVSRAKVVSKVAKYPHIDDYRRAVQELDEKEFLSLWLVLSEVRNRYCSLHDIVIKNMEKLKK 242          
BLAST of NO24G02110 vs. NCBI_GenBank
Match: KFM60484.1 (Proteasome activator complex subunit 3, partial [Stegodyphus mimosarum])

HSP 1 Score: 92.4 bits (228), Expect = 2.100e-15
Identity = 49/133 (36.84%), Postives = 78/133 (58.65%), Query Frame = 0
Query:  106 NPEVFALFQRVKGLVLRLVEDLGVLKLFVRLASPAIADG-SFNSSVQEDVLEVISSSRSAGLMVLQHICKYFLERAHYVVKSKRYPLVSDFRKAVEQMDKQQILSLSESVMGIRNSYLLIHDKITKNQDRLKQ 238
            N  +  + + VK  + +LVED  VLK++++   P I DG +F  S+QED L  I +  S        I +YFL R   V K  +YP V DFR+ V+++D+++ LS+   +  +RN Y  +HD ITKN +++K+
Sbjct:  118 NNHIVGVVELVKPRIQQLVEDANVLKMWIQFLIPRIEDGNNFGVSIQEDTLGEIRTVESEAAAYFDQISRYFLTRGKIVSKVAKYPHVDDFRRTVQELDEKEFLSMRLIICELRNHYATLHDMITKNLEKIKK 250          
BLAST of NO24G02110 vs. NCBI_GenBank
Match: XP_015903467.1 (proteasome activator complex subunit 3 isoform X2 [Parasteatoda tepidariorum])

HSP 1 Score: 91.7 bits (226), Expect = 3.600e-15
Identity = 48/133 (36.09%), Postives = 78/133 (58.65%), Query Frame = 0
Query:  106 NPEVFALFQRVKGLVLRLVEDLGVLKLFVRLASPAIADG-SFNSSVQEDVLEVISSSRSAGLMVLQHICKYFLERAHYVVKSKRYPLVSDFRKAVEQMDKQQILSLSESVMGIRNSYLLIHDKITKNQDRLKQ 238
            N  +  + + VK  + +LVED  VLK++++   P I DG +F  S+QED L  + +  S        I +YFL R   V K  +YP V DFR+ V+++D+++ LS+   +  +RN Y  +HD ITKN +++K+
Sbjct:  117 NSHIVDVVELVKPRIQQLVEDANVLKMWIQFLIPRIEDGNNFGVSIQEDTLGEVRTVESEAAAYFDQISRYFLTRGKIVSKVAKYPHVDDFRRTVQELDEKEFLSMRLIICELRNHYATLHDMITKNLEKIKK 249          
BLAST of NO24G02110 vs. NCBI_GenBank
Match: CEO95185.1 (hypothetical protein PBRA_003951 [Plasmodiophora brassicae])

HSP 1 Score: 90.9 bits (224), Expect = 6.100e-15
Identity = 49/144 (34.03%), Postives = 86/144 (59.72%), Query Frame = 0
Query:  106 NPEVFALFQRVKGLVLRLVEDLGVLKLFVRLASPAIADG-SFNSSVQEDVLEVISSSRSAGLMVLQHICKYFLERAHYVVKSKRYPLVSDFRKAVEQMDKQQILSLSESVMGIRNSYLLIHDKITKNQDRLKQASKPERHSSHM 249
            N  V  L + +K  +L L++ L VLKL+V+L  P+I DG +F  S+QE++  ++ + +++GL  L    KY+  R   + K  +YP V D+ + + ++D+++ L L    + +RN+Y ++ D ITKN+DRL++      H S M
Sbjct:   86 NRGVTQLLEVLKVEILELIQYLDVLKLWVQLNIPSIQDGNNFGVSIQEEIAGMLEAGKNSGLGFLDTFTKYYATRGKLITKLNKYPNVDDYHRGIAELDEKKHLLLRHCCLDLRNNYAVLFDMITKNKDRLEKPRGLSNHISSM 229          
BLAST of NO24G02110 vs. NCBI_GenBank
Match: CRK96527.1 (CLUMA_CG009935, isoform A [Clunio marinus])

HSP 1 Score: 90.9 bits (224), Expect = 6.100e-15
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 0
Query:  103 VHVNPEVFALFQRVKGLVLRLVEDLGVLKLFVRLASPAIADG-SFNSSVQEDVLEVISSSRSAGLMVLQHICKYFLERAHYVVKSKRYPLVSDFRKAVEQMDKQQILSLSESVMGIRNSYLLIHDKITKNQDRLKQ 238
            V  N  +  + + VK ++  LVED  +LK+++    P I DG +F  S+QED L  I S  S        I +YF+ RA  V K  +YP + D+R+AV++MD+++ LSL   +  +RN Y  +HD + KN ++LK+
Sbjct:  103 VKCNAPICDIIKVVKPVIRGLVEDSNLLKMWISFMIPKIEDGNNFGVSIQEDTLAEIQSVESEAAAFFDQISRYFISRAKLVSKVAKYPHIEDYRRAVQEMDEKEFLSLWLVLSEVRNRYCSLHDIVMKNMEKLKK 238          
BLAST of NO24G02110 vs. NCBI_GenBank
Match: KPM03284.1 (proteasome activator complex subunit 3-like protein [Sarcoptes scabiei])

HSP 1 Score: 90.5 bits (223), Expect = 8.000e-15
Identity = 49/146 (33.56%), Postives = 81/146 (55.48%), Query Frame = 0
Query:  103 VHVNPEVFALFQRVKGLVLRLVEDLGVLKLFVRLASPAIADG-SFNSSVQEDVLEVISSSRSAGLMVLQHICKYFLERAHYVVKSKRYPLVSDFRKAVEQMDKQQILSLSESVMGIRNSYLLIHDKITKNQDRLKQASKPERHSSH 248
            V  N  +  L   VK L+ +LV+D  +LK++V    P I DG +F  S+QE+ L  I +  +        + +YFL RA  + K  +YP V DFR+ V ++D+++ +SL   V  +RN Y  +HD +TKN +++K      +H+ +
Sbjct:  141 VRCNIHIIELIDIVKPLIRQLVDDTNLLKMWVLFLIPRIEDGNNFGVSIQEETLSEIRTVEAEAAAYFDQMSRYFLSRAKIITKIAKYPHVDDFRRNVSEIDEKEFISLRLIVAELRNHYASLHDIVTKNLEKIKTPRPQNQHTMY 286          
The following BLAST results are available for this feature:
BLAST of NO24G02110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_003741715.14.200e-1633.09PREDICTED: proteasome activator complex subunit 3-... [more]
XP_017487859.11.200e-1539.26PREDICTED: proteasome activator complex subunit 3-... [more]
PRD34858.11.200e-1537.59Proteasome activator complex subunit 3 [Nephila cl... [more]
KXJ76000.11.600e-1536.76hypothetical protein RP20_CCG010543 [Aedes albopic... [more]
XP_019558824.11.600e-1536.76PREDICTED: proteasome activator complex subunit 3 ... [more]
KFM60484.12.100e-1536.84Proteasome activator complex subunit 3, partial [S... [more]
XP_015903467.13.600e-1536.09proteasome activator complex subunit 3 isoform X2 ... [more]
CEO95185.16.100e-1534.03hypothetical protein PBRA_003951 [Plasmodiophora b... [more]
CRK96527.16.100e-1536.76CLUMA_CG009935, isoform A [Clunio marinus][more]
KPM03284.18.000e-1533.56proteasome activator complex subunit 3-like protei... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02110.1NO24G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598762gene_7434Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101168g3gene6057Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02110.1NO24G02110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02110 ID=NO24G02110|Name=NO24G02110|organism=Nannochloropsis oceanica|type=gene|length=3623bp
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGTAATGTCTCAAAGGGCCTTGGTGGGG
AGCGGGGCGGAGTCTCCTCCTCATGGCCTACGCAACCGCCAATGACGTAG
TCCGAAGGAAACATGTTGCCTGGAATTCAGCCCGCCGGGTAGGGGTGGAT
GTCTAGGCGTGCTGCTGTGCCGTCCGCCTTTTCGCAGTGTTGCCGCAACT
GTGCCACACGTGCTACCGGAGGAGCTCGGTCCAAGCGTAGGGGGAGACCA
GCTGCAATTTGAGGTGGCAACTGACCGTGGGTTGTGCCTGAGGGATTGGA
GTAAGTGAATAGAATTGGTGGAGAAAGCCGATAAGACACAGTTATGGTAG
TGATGTACTAATTGACACACACATGCAGTGTGAGACCCCCTGAGTGACCC
ATACGTCGATGCATCGGATAAGCGTGAGAAAAGATGAGATGCCCCCTCGC
CCCTCGACGAAAGCGACGCAACGTGCAAGCCTGCCACCGCCCTTTCCCAG
GCTATTGATCTCCACAGACGAGCGTGGTGGAGTCAGCCTGCACCATAGAA
TGCCCAAGTGCCAGCTCCAACAATAATCAGGACAAAAAAGAGATACTTTT
GCTCGGGCCGGCATATTCTTTGAAGATCAAGCACTGCTTGGCAAGCCGAG
GCCGCGTAAGAGCAAACAAGAGGATGGATGTTGCGGCCGTGAAGCCGCCT
GGCGATTGCATGCCTGTGTGCATAACGAAGTGCACATTGTGCATATTTAA
GGCTCTTCTAACTGGTAATGTATGCCTTTTGCTTCTCATCCTTGTCCCCA
GGGGCGTCTGGCAGTGAAATTAGGAGGACGCTCGAGAAAAAGAGTAAATT
AAAGAAGCCGTTGGCCCACCTGCCCAAGCAAGCATCACTACACCTTTGCA
GGGCAGAAGGTCTCACCTCTCATTCGCCAGACAAGCCCTCACATATCTAC
GACACCCATACAAACGAAATAACAGTTGAATGTCCAGCGGTATCAGCAGC
CGTGGCGCCCGCAAGGGCGGTGGGGGAGCGGGGGAGGAGGCAAGAAGGAA
ATGGACCCTGCAGCACTTTCCCTGAAGgtcagagacaaggaaggagggag
ggagggagggagggaggggtgaagggacaacgtatctctttttcaatctt
gacgatacgcgtgatatgcttgcttgtccgcatctctacgcctcgtaagt
ctcagcccatgccaaaaacctcacccacccacccctgctctctttcctcc
tttccttccttccctccctccctccttgccctcccttcagGCCTCCAACA
TAAAGGCAGCCGAGACGCTGATTGCCGAGGGAATGCCTGAGCGCATCTTG
GAGCTGCACAAGATGCACGAGgtgagggcggggagggatggaaggacgga
cggggagagcctgctcgttcctcgtgtgtcttttgtcttcctccttccct
ctgcattcactcatacacaagccactctctcctcccctgtctagTCCCTC
CGTGCGGCCCGTCATGCGTCGGAAGCAGCGACAGCCGCCGCCCAAGAAGA
AAAAAAGGAAGAAATAGAAGAAGATGGCAAAGGCGTGTTACCTACCTCCC
TCCCTTCCCTTCCAACCTCCTCGTCCTCCCCTTCCGTCTCAACCGGCACC
GGGGAAGGCGGGAAAGAGGGCGGGAAGGAGAAGGATGTGATTGTCCACGT
CAATCCGGAAGTTTTCGCGCTCTTTCAGCGGGTGAAGGGGCTGGTGCTGC
GGCTGGTGGAGGACCTAGGAGTGCTTAAgtgagggcgggatggaacgagg
gcgggcgggcgggcgggcgggcgggagagagggagggagagagggagaga
gaagccatgtttttgctcctttagagccgtagtatcaaatacaggctttg
agattcaaatctcactcagtttatctgcttgcgtcctctgccctccctcc
ctccctacatcccagGCTCTTCGTCCGCCTGGCCTCCCCCGCCATTGCCG
ACGGTTCCTTCAACAGTTCCGTACAAGAAGACGTCCTCGAGgtaggctct
tcctccctccttccctcccccctccttccattcttctcattcctccgacc
acccatcgacccccacctccctccctctctccctccctcccgccctgcct
gtccagGTCATCTCCTCTTCCCGTAGCGCCGGCCTGATGGTCCTCCAGCA
CATCTGCAAATACTTCTTGGAAAGGGCGCATTACGTGGTGAAGgtgaggg
agggagggagggaggggagggtgggaggggagggtggcttgtgggcgagt
aaaggaacgttgatgtcgtttttatgggccgggcgaagtggatataacgg
gacgaagagggagggagggagggagggagggagggagggagggagggagg
gagggagggagggacagctttgaagccctgtttttacgcttctgtctcca
ttttcgttcccgtgtccttcaaaagtcaatgtctctccctccctccctcc
ctccctccctccctccctctctccctcccttatttcgtcgtttgaccagt
accctccctccctccctccctccctccctccctccctccctccctccctc
tagAGCAAAAGGTACCCCCTGGTGTCGGATTTTCGCAAGGCCGTGGAGCA
GATGGACAAACAGCAGATACTGTCCCTGTCAGAGAGTGTGATGgtaggga
gggagggagggagggagggagggagggagggagggaaggtgaggggtgac
acctaacctaattctgatccacagcgttctgaaacacactcatattcgtc
cctcccttcctccttccctccttccctccttttcctccctccttccctct
gaaactctcttgcttgctccccccctttcaccctccctccgtccctccct
cccagGGCATCCGCAATTCTTACCTCCTCATCCACGACAAAATCACTAAA
AACCAAGACCGGCTGAAGCAAGCGTCCAAGCCCGAGAGACACTCTTCCCA
CATGGTGTGCTAGAGACGGAGGGAGAGAGAGAGGGACGGGAGGGAGGGAG
GGAGGGAGGGAGAGGGAAGGAGGAGCGAAAGTAAGTGGTATGTACATGAT
ACGTACGTGCGTGTATGTGGCGCGTGGGCTACGAAGAAGAGAGAGGGAGA
GAACGGAGAGAGGAGGAGATGAAATGGAAGAAGAGGGAGGAGGAGAAGGG
AAAGAAATAATCCGTGAGGGAACATGACAAGCAGAAAGACTGAAGACGAA
ATAAGGAAGAAAAAGCAGTAGAAAATGAAGGGTTTGAGACACGCCACTGT
CATTGCTGCTGCTGCTGCTGCCAGTGTGTTTGCAATTGTTGCTTTCAGCT
TTGGAACAGACTTAATACGTACGCTAAGTATCATGCAGGTCCAGCCAGGA
AAGGGGGGTCGAGGGTGTGAATGATGGTCTTGCCGGCTTCTCCTCCCCTT
TATCTACCTCTTCCCTCCTACATTACCTCCTTCGCGTCCCTCCCTTCCTG
TACAAATCTACTGGCATCTTACAAACAAACAACGCCTTCCTTCCCTCCCT
CCCTCCCCCCTCCCTCCCTCCCT
back to top

protein sequence of NO24G02110.1

>NO24G02110.1-protein ID=NO24G02110.1-protein|Name=NO24G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MDPAALSLKASNIKAAETLIAEGMPERILELHKMHESLRAARHASEAATA
AAQEEKKEEIEEDGKGVLPTSLPSLPTSSSSPSVSTGTGEGGKEGGKEKD
VIVHVNPEVFALFQRVKGLVLRLVEDLGVLKLFVRLASPAIADGSFNSSV
QEDVLEVISSSRSAGLMVLQHICKYFLERAHYVVKSKRYPLVSDFRKAVE
QMDKQQILSLSESVMGIRNSYLLIHDKITKNQDRLKQASKPERHSSHMVC
*
back to top
Synonyms
Publications