NO24G02110.1, NO24G02110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02110.1
Unique NameNO24G02110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2413
Alignment locationchr24:562006..565628 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:562006..565628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02110.1 vs.
Match: EWM24425.1 (hypothetical protein Naga_101168g3 [Nannochloropsis gaditana])

HSP 1 Score: 99.4 bits (246), Expect = 1.700e-17
Identity = 72/142 (50.70%), Postives = 83/142 (58.45%), Query Frame = 0 
Query:    6 LSLKASNIKAAETLIAEGMPERILELHKMHESLRAARHASEAATAAAQEEKKEEIEEDGKGVLPTSLPSLPTSSSSPSVSTGTGEG--------------GKEG--GKEKDVIVHVNPEVFALFQRVKGLVLRLVEDLGVLK 132
            + L+AS  +AAE LIAEG+P RILELH +H+SLR A +ASEA  A    E          G  P S PS P +  SP   TG G G              GKEG  G+E   I HVN EVFALF+RVK LVLRLVEDLGVL+
Sbjct:   29 VDLQASTTEAAENLIAEGIPARILELHALHQSLRTAGNASEATAARINTE----------GSSPPSHPS-PENPPSPPARTGVGPGGGEEKEGVGKAEGVGKEGGEGEEAGKIDHVNAEVFALFRRVKALVLRLVEDLGVLR 159
The following BLAST results are available for this feature:
BLAST of NO24G02110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800200022002400SequenceEWM24425.1
Match NameE-valueIdentityDescription
EWM24425.11.700e-1750.70hypothetical protein Naga_101168g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02110NO24G02110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02110.1NO24G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02110.1.cds1NO24G02110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02110.1.cds2NO24G02110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02110.1.cds3NO24G02110.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02110.1.cds4NO24G02110.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02110.1.cds5NO24G02110.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02110.1.cds6NO24G02110.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02110.1.cds7NO24G02110.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02110.1 ID=NO24G02110.1|Name=NO24G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2413bp
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGTAATGTCTCAAAGGGCCTTGGTGGGG
AGCGGGGCGGAGTCTCCTCCTCATGGCCTACGCAACCGCCAATGACGTAG
TCCGAAGGAAACATGTTGCCTGGAATTCAGCCCGCCGGGTAGGGGTGGAT
GTCTAGGCGTGCTGCTGTGCCGTCCGCCTTTTCGCAGTGTTGCCGCAACT
GTGCCACACGTGCTACCGGAGGAGCTCGGTCCAAGCGTAGGGGGAGACCA
GCTGCAATTTGAGGTGGCAACTGACCGTGGGTTGTGCCTGAGGGATTGGA
GTAAGTGAATAGAATTGGTGGAGAAAGCCGATAAGACACAGTTATGGTAG
TGATGTACTAATTGACACACACATGCAGTGTGAGACCCCCTGAGTGACCC
ATACGTCGATGCATCGGATAAGCGTGAGAAAAGATGAGATGCCCCCTCGC
CCCTCGACGAAAGCGACGCAACGTGCAAGCCTGCCACCGCCCTTTCCCAG
GCTATTGATCTCCACAGACGAGCGTGGTGGAGTCAGCCTGCACCATAGAA
TGCCCAAGTGCCAGCTCCAACAATAATCAGGACAAAAAAGAGATACTTTT
GCTCGGGCCGGCATATTCTTTGAAGATCAAGCACTGCTTGGCAAGCCGAG
GCCGCGTAAGAGCAAACAAGAGGATGGATGTTGCGGCCGTGAAGCCGCCT
GGCGATTGCATGCCTGTGTGCATAACGAAGTGCACATTGTGCATATTTAA
GGCTCTTCTAACTGGTAATGTATGCCTTTTGCTTCTCATCCTTGTCCCCA
GGGGCGTCTGGCAGTGAAATTAGGAGGACGCTCGAGAAAAAGAGTAAATT
AAAGAAGCCGTTGGCCCACCTGCCCAAGCAAGCATCACTACACCTTTGCA
GGGCAGAAGGTCTCACCTCTCATTCGCCAGACAAGCCCTCACATATCTAC
GACACCCATACAAACGAAATAACAGTTGAATGTCCAGCGGTATCAGCAGC
CGTGGCGCCCGCAAGGGCGGTGGGGGAGCGGGGGAGGAGGCAAGAAGGAA
ATGGACCCTGCAGCACTTTCCCTGAAGGCCTCCAACATAAAGGCAGCCGA
GACGCTGATTGCCGAGGGAATGCCTGAGCGCATCTTGGAGCTGCACAAGA
TGCACGAGTCCCTCCGTGCGGCCCGTCATGCGTCGGAAGCAGCGACAGCC
GCCGCCCAAGAAGAAAAAAAGGAAGAAATAGAAGAAGATGGCAAAGGCGT
GTTACCTACCTCCCTCCCTTCCCTTCCAACCTCCTCGTCCTCCCCTTCCG
TCTCAACCGGCACCGGGGAAGGCGGGAAAGAGGGCGGGAAGGAGAAGGAT
GTGATTGTCCACGTCAATCCGGAAGTTTTCGCGCTCTTTCAGCGGGTGAA
GGGGCTGGTGCTGCGGCTGGTGGAGGACCTAGGAGTGCTTAAGCTCTTCG
TCCGCCTGGCCTCCCCCGCCATTGCCGACGGTTCCTTCAACAGTTCCGTA
CAAGAAGACGTCCTCGAGGTCATCTCCTCTTCCCGTAGCGCCGGCCTGAT
GGTCCTCCAGCACATCTGCAAATACTTCTTGGAAAGGGCGCATTACGTGG
TGAAGAGCAAAAGGTACCCCCTGGTGTCGGATTTTCGCAAGGCCGTGGAG
CAGATGGACAAACAGCAGATACTGTCCCTGTCAGAGAGTGTGATGGGCAT
CCGCAATTCTTACCTCCTCATCCACGACAAAATCACTAAAAACCAAGACC
GGCTGAAGCAAGCGTCCAAGCCCGAGAGACACTCTTCCCACATGGTGTGC
TAGAGACGGAGGGAGAGAGAGAGGGACGGGAGGGAGGGAGGGAGGGAGGG
AGAGGGAAGGAGGAGCGAAAGTAAGTGGTATGTACATGATACGTACGTGC
GTGTATGTGGCGCGTGGGCTACGAAGAAGAGAGAGGGAGAGAACGGAGAG
AGGAGGAGATGAAATGGAAGAAGAGGGAGGAGGAGAAGGGAAAGAAATAA
TCCGTGAGGGAACATGACAAGCAGAAAGACTGAAGACGAAATAAGGAAGA
AAAAGCAGTAGAAAATGAAGGGTTTGAGACACGCCACTGTCATTGCTGCT
GCTGCTGCTGCCAGTGTGTTTGCAATTGTTGCTTTCAGCTTTGGAACAGA
CTTAATACGTACGCTAAGTATCATGCAGGTCCAGCCAGGAAAGGGGGGTC
GAGGGTGTGAATGATGGTCTTGCCGGCTTCTCCTCCCCTTTATCTACCTC
TTCCCTCCTACATTACCTCCTTCGCGTCCCTCCCTTCCTGTACAAATCTA
CTGGCATCTTACAAACAAACAACGCCTTCCTTCCCTCCCTCCCTCCCCCC
TCCCTCCCTCCCT
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protein sequence of NO24G02110.1

>NO24G02110.1-protein ID=NO24G02110.1-protein|Name=NO24G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MDPAALSLKASNIKAAETLIAEGMPERILELHKMHESLRAARHASEAATA
AAQEEKKEEIEEDGKGVLPTSLPSLPTSSSSPSVSTGTGEGGKEGGKEKD
VIVHVNPEVFALFQRVKGLVLRLVEDLGVLKLFVRLASPAIADGSFNSSV
QEDVLEVISSSRSAGLMVLQHICKYFLERAHYVVKSKRYPLVSDFRKAVE
QMDKQQILSLSESVMGIRNSYLLIHDKITKNQDRLKQASKPERHSSHMVC
*
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mRNA from alignment at chr24:562006..565628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02110.1 ID=NO24G02110.1|Name=NO24G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=3623bp|location=Sequence derived from alignment at chr24:562006..565628- (Nannochloropsis oceanica)
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGTAATGTCTCAAAGGGCCTTGGTGGGG
AGCGGGGCGGAGTCTCCTCCTCATGGCCTACGCAACCGCCAATGACGTAG
TCCGAAGGAAACATGTTGCCTGGAATTCAGCCCGCCGGGTAGGGGTGGAT
GTCTAGGCGTGCTGCTGTGCCGTCCGCCTTTTCGCAGTGTTGCCGCAACT
GTGCCACACGTGCTACCGGAGGAGCTCGGTCCAAGCGTAGGGGGAGACCA
GCTGCAATTTGAGGTGGCAACTGACCGTGGGTTGTGCCTGAGGGATTGGA
GTAAGTGAATAGAATTGGTGGAGAAAGCCGATAAGACACAGTTATGGTAG
TGATGTACTAATTGACACACACATGCAGTGTGAGACCCCCTGAGTGACCC
ATACGTCGATGCATCGGATAAGCGTGAGAAAAGATGAGATGCCCCCTCGC
CCCTCGACGAAAGCGACGCAACGTGCAAGCCTGCCACCGCCCTTTCCCAG
GCTATTGATCTCCACAGACGAGCGTGGTGGAGTCAGCCTGCACCATAGAA
TGCCCAAGTGCCAGCTCCAACAATAATCAGGACAAAAAAGAGATACTTTT
GCTCGGGCCGGCATATTCTTTGAAGATCAAGCACTGCTTGGCAAGCCGAG
GCCGCGTAAGAGCAAACAAGAGGATGGATGTTGCGGCCGTGAAGCCGCCT
GGCGATTGCATGCCTGTGTGCATAACGAAGTGCACATTGTGCATATTTAA
GGCTCTTCTAACTGGTAATGTATGCCTTTTGCTTCTCATCCTTGTCCCCA
GGGGCGTCTGGCAGTGAAATTAGGAGGACGCTCGAGAAAAAGAGTAAATT
AAAGAAGCCGTTGGCCCACCTGCCCAAGCAAGCATCACTACACCTTTGCA
GGGCAGAAGGTCTCACCTCTCATTCGCCAGACAAGCCCTCACATATCTAC
GACACCCATACAAACGAAATAACAGTTGAATGTCCAGCGGTATCAGCAGC
CGTGGCGCCCGCAAGGGCGGTGGGGGAGCGGGGGAGGAGGCAAGAAGGAA
ATGGACCCTGCAGCACTTTCCCTGAAGGTCAGAGACAAGGAAGGAGGGAG
GGAGGGAGGGAGGGAGGGGTGAAGGGACAACGTATCTCTTTTTCAATCTT
GACGATACGCGTGATATGCTTGCTTGTCCGCATCTCTACGCCTCGTAAGT
CTCAGCCCATGCCAAAAACCTCACCCACCCACCCCTGCTCTCTTTCCTCC
TTTCCTTCCTTCCCTCCCTCCCTCCTTGCCCTCCCTTCAGGCCTCCAACA
TAAAGGCAGCCGAGACGCTGATTGCCGAGGGAATGCCTGAGCGCATCTTG
GAGCTGCACAAGATGCACGAGGTGAGGGCGGGGAGGGATGGAAGGACGGA
CGGGGAGAGCCTGCTCGTTCCTCGTGTGTCTTTTGTCTTCCTCCTTCCCT
CTGCATTCACTCATACACAAGCCACTCTCTCCTCCCCTGTCTAGTCCCTC
CGTGCGGCCCGTCATGCGTCGGAAGCAGCGACAGCCGCCGCCCAAGAAGA
AAAAAAGGAAGAAATAGAAGAAGATGGCAAAGGCGTGTTACCTACCTCCC
TCCCTTCCCTTCCAACCTCCTCGTCCTCCCCTTCCGTCTCAACCGGCACC
GGGGAAGGCGGGAAAGAGGGCGGGAAGGAGAAGGATGTGATTGTCCACGT
CAATCCGGAAGTTTTCGCGCTCTTTCAGCGGGTGAAGGGGCTGGTGCTGC
GGCTGGTGGAGGACCTAGGAGTGCTTAAGTGAGGGCGGGATGGAACGAGG
GCGGGCGGGCGGGCGGGCGGGCGGGAGAGAGGGAGGGAGAGAGGGAGAGA
GAAGCCATGTTTTTGCTCCTTTAGAGCCGTAGTATCAAATACAGGCTTTG
AGATTCAAATCTCACTCAGTTTATCTGCTTGCGTCCTCTGCCCTCCCTCC
CTCCCTACATCCCAGGCTCTTCGTCCGCCTGGCCTCCCCCGCCATTGCCG
ACGGTTCCTTCAACAGTTCCGTACAAGAAGACGTCCTCGAGGTAGGCTCT
TCCTCCCTCCTTCCCTCCCCCCTCCTTCCATTCTTCTCATTCCTCCGACC
ACCCATCGACCCCCACCTCCCTCCCTCTCTCCCTCCCTCCCGCCCTGCCT
GTCCAGGTCATCTCCTCTTCCCGTAGCGCCGGCCTGATGGTCCTCCAGCA
CATCTGCAAATACTTCTTGGAAAGGGCGCATTACGTGGTGAAGGTGAGGG
AGGGAGGGAGGGAGGGGAGGGTGGGAGGGGAGGGTGGCTTGTGGGCGAGT
AAAGGAACGTTGATGTCGTTTTTATGGGCCGGGCGAAGTGGATATAACGG
GACGAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGACAGCTTTGAAGCCCTGTTTTTACGCTTCTGTCTCCA
TTTTCGTTCCCGTGTCCTTCAAAAGTCAATGTCTCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCTCTCCCTCCCTTATTTCGTCGTTTGACCAGT
ACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
TAGAGCAAAAGGTACCCCCTGGTGTCGGATTTTCGCAAGGCCGTGGAGCA
GATGGACAAACAGCAGATACTGTCCCTGTCAGAGAGTGTGATGGTAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGTGAGGGGTGAC
ACCTAACCTAATTCTGATCCACAGCGTTCTGAAACACACTCATATTCGTC
CCTCCCTTCCTCCTTCCCTCCTTCCCTCCTTTTCCTCCCTCCTTCCCTCT
GAAACTCTCTTGCTTGCTCCCCCCCTTTCACCCTCCCTCCGTCCCTCCCT
CCCAGGGCATCCGCAATTCTTACCTCCTCATCCACGACAAAATCACTAAA
AACCAAGACCGGCTGAAGCAAGCGTCCAAGCCCGAGAGACACTCTTCCCA
CATGGTGTGCTAGAGACGGAGGGAGAGAGAGAGGGACGGGAGGGAGGGAG
GGAGGGAGGGAGAGGGAAGGAGGAGCGAAAGTAAGTGGTATGTACATGAT
ACGTACGTGCGTGTATGTGGCGCGTGGGCTACGAAGAAGAGAGAGGGAGA
GAACGGAGAGAGGAGGAGATGAAATGGAAGAAGAGGGAGGAGGAGAAGGG
AAAGAAATAATCCGTGAGGGAACATGACAAGCAGAAAGACTGAAGACGAA
ATAAGGAAGAAAAAGCAGTAGAAAATGAAGGGTTTGAGACACGCCACTGT
CATTGCTGCTGCTGCTGCTGCCAGTGTGTTTGCAATTGTTGCTTTCAGCT
TTGGAACAGACTTAATACGTACGCTAAGTATCATGCAGGTCCAGCCAGGA
AAGGGGGGTCGAGGGTGTGAATGATGGTCTTGCCGGCTTCTCCTCCCCTT
TATCTACCTCTTCCCTCCTACATTACCTCCTTCGCGTCCCTCCCTTCCTG
TACAAATCTACTGGCATCTTACAAACAAACAACGCCTTCCTTCCCTCCCT
CCCTCCCCCCTCCCTCCCTCCCT
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Coding sequence (CDS) from alignment at chr24:562006..565628-

>NO24G02110.1 ID=NO24G02110.1|Name=NO24G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr24:562006..565628- (Nannochloropsis oceanica)
ATGGACCCTGCAGCACTTTCCCTGAAGGCCTCCAACATAAAGGCAGCCGA
GACGCTGATTGCCGAGGGAATGCCTGAGCGCATCTTGGAGCTGCACAAGA
TGCACGAGTCCCTCCGTGCGGCCCGTCATGCGTCGGAAGCAGCGACAGCC
GCCGCCCAAGAAGAAAAAAAGGAAGAAATAGAAGAAGATGGCAAAGGCGT
GTTACCTACCTCCCTCCCTTCCCTTCCAACCTCCTCGTCCTCCCCTTCCG
TCTCAACCGGCACCGGGGAAGGCGGGAAAGAGGGCGGGAAGGAGAAGGAT
GTGATTGTCCACGTCAATCCGGAAGTTTTCGCGCTCTTTCAGCGGGTGAA
GGGGCTGGTGCTGCGGCTGGTGGAGGACCTAGGAGTGCTTAAGCTCTTCG
TCCGCCTGGCCTCCCCCGCCATTGCCGACGGTTCCTTCAACAGTTCCGTA
CAAGAAGACGTCCTCGAGGTCATCTCCTCTTCCCGTAGCGCCGGCCTGAT
GGTCCTCCAGCACATCTGCAAATACTTCTTGGAAAGGGCGCATTACGTGG
TGAAGAGCAAAAGGTACCCCCTGGTGTCGGATTTTCGCAAGGCCGTGGAG
CAGATGGACAAACAGCAGATACTGTCCCTGTCAGAGAGTGTGATGGGCAT
CCGCAATTCTTACCTCCTCATCCACGACAAAATCACTAAAAACCAAGACC
GGCTGAAGCAAGCGTCCAAGCCCGAGAGACACTCTTCCCACATGGTGTGC
TAG
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Synonyms
Publications