NO24G02110.1, NO24G02110.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G02110.1
Unique Name	NO24G02110.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2413
Alignment location	chr24:562006..565628 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:562006..565628 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO24G02110.1 vs.
Match: EWM24425.1 (hypothetical protein Naga_101168g3 [Nannochloropsis gaditana])

HSP 1 Score: 99.4 bits (246), Expect = 1.700e-17
Identity = 72/142 (50.70%), Postives = 83/142 (58.45%), Query Frame = 0

Query:    6 LSLKASNIKAAETLIAEGMPERILELHKMHESLRAARHASEAATAAAQEEKKEEIEEDGKGVLPTSLPSLPTSSSSPSVSTGTGEG--------------GKEG--GKEKDVIVHVNPEVFALFQRVKGLVLRLVEDLGVLK 132
            + L+AS  +AAE LIAEG+P RILELH +H+SLR A +ASEA  A    E          G  P S PS P +  SP   TG G G              GKEG  G+E   I HVN EVFALF+RVK LVLRLVEDLGVL+
Sbjct:   29 VDLQASTTEAAENLIAEGIPARILELHALHQSLRTAGNASEATAARINTE----------GSSPPSHPS-PENPPSPPARTGVGPGGGEEKEGVGKAEGVGKEGGEGEEAGKIDHVNAEVFALFRRVKALVLRLVEDLGVLR 159

The following BLAST results are available for this feature:

BLAST of NO24G02110.1 vs.

BLAST of NO24G02110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24425.1	1.700e-17	50.70	hypothetical protein Naga_101168g3 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO24G02110	NO24G02110	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO24G02110.1	NO24G02110.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO24G02110.1.cds1	NO24G02110.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02110.1.cds2	NO24G02110.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02110.1.cds3	NO24G02110.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02110.1.cds4	NO24G02110.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02110.1.cds5	NO24G02110.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02110.1.cds6	NO24G02110.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02110.1.cds7	NO24G02110.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr24:562006..565628-
coding sequence from alignment at chr24:562006..565628-

mRNA sequence

>NO24G02110.1 ID=NO24G02110.1|Name=NO24G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2413bp
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGTAATGTCTCAAAGGGCCTTGGTGGGG
AGCGGGGCGGAGTCTCCTCCTCATGGCCTACGCAACCGCCAATGACGTAG
TCCGAAGGAAACATGTTGCCTGGAATTCAGCCCGCCGGGTAGGGGTGGAT
GTCTAGGCGTGCTGCTGTGCCGTCCGCCTTTTCGCAGTGTTGCCGCAACT
GTGCCACACGTGCTACCGGAGGAGCTCGGTCCAAGCGTAGGGGGAGACCA
GCTGCAATTTGAGGTGGCAACTGACCGTGGGTTGTGCCTGAGGGATTGGA
GTAAGTGAATAGAATTGGTGGAGAAAGCCGATAAGACACAGTTATGGTAG
TGATGTACTAATTGACACACACATGCAGTGTGAGACCCCCTGAGTGACCC
ATACGTCGATGCATCGGATAAGCGTGAGAAAAGATGAGATGCCCCCTCGC
CCCTCGACGAAAGCGACGCAACGTGCAAGCCTGCCACCGCCCTTTCCCAG
GCTATTGATCTCCACAGACGAGCGTGGTGGAGTCAGCCTGCACCATAGAA
TGCCCAAGTGCCAGCTCCAACAATAATCAGGACAAAAAAGAGATACTTTT
GCTCGGGCCGGCATATTCTTTGAAGATCAAGCACTGCTTGGCAAGCCGAG
GCCGCGTAAGAGCAAACAAGAGGATGGATGTTGCGGCCGTGAAGCCGCCT
GGCGATTGCATGCCTGTGTGCATAACGAAGTGCACATTGTGCATATTTAA
GGCTCTTCTAACTGGTAATGTATGCCTTTTGCTTCTCATCCTTGTCCCCA
GGGGCGTCTGGCAGTGAAATTAGGAGGACGCTCGAGAAAAAGAGTAAATT
AAAGAAGCCGTTGGCCCACCTGCCCAAGCAAGCATCACTACACCTTTGCA
GGGCAGAAGGTCTCACCTCTCATTCGCCAGACAAGCCCTCACATATCTAC
GACACCCATACAAACGAAATAACAGTTGAATGTCCAGCGGTATCAGCAGC
CGTGGCGCCCGCAAGGGCGGTGGGGGAGCGGGGGAGGAGGCAAGAAGGAA
ATGGACCCTGCAGCACTTTCCCTGAAGGCCTCCAACATAAAGGCAGCCGA
GACGCTGATTGCCGAGGGAATGCCTGAGCGCATCTTGGAGCTGCACAAGA
TGCACGAGTCCCTCCGTGCGGCCCGTCATGCGTCGGAAGCAGCGACAGCC
GCCGCCCAAGAAGAAAAAAAGGAAGAAATAGAAGAAGATGGCAAAGGCGT
GTTACCTACCTCCCTCCCTTCCCTTCCAACCTCCTCGTCCTCCCCTTCCG
TCTCAACCGGCACCGGGGAAGGCGGGAAAGAGGGCGGGAAGGAGAAGGAT
GTGATTGTCCACGTCAATCCGGAAGTTTTCGCGCTCTTTCAGCGGGTGAA
GGGGCTGGTGCTGCGGCTGGTGGAGGACCTAGGAGTGCTTAAGCTCTTCG
TCCGCCTGGCCTCCCCCGCCATTGCCGACGGTTCCTTCAACAGTTCCGTA
CAAGAAGACGTCCTCGAGGTCATCTCCTCTTCCCGTAGCGCCGGCCTGAT
GGTCCTCCAGCACATCTGCAAATACTTCTTGGAAAGGGCGCATTACGTGG
TGAAGAGCAAAAGGTACCCCCTGGTGTCGGATTTTCGCAAGGCCGTGGAG
CAGATGGACAAACAGCAGATACTGTCCCTGTCAGAGAGTGTGATGGGCAT
CCGCAATTCTTACCTCCTCATCCACGACAAAATCACTAAAAACCAAGACC
GGCTGAAGCAAGCGTCCAAGCCCGAGAGACACTCTTCCCACATGGTGTGC
TAGAGACGGAGGGAGAGAGAGAGGGACGGGAGGGAGGGAGGGAGGGAGGG
AGAGGGAAGGAGGAGCGAAAGTAAGTGGTATGTACATGATACGTACGTGC
GTGTATGTGGCGCGTGGGCTACGAAGAAGAGAGAGGGAGAGAACGGAGAG
AGGAGGAGATGAAATGGAAGAAGAGGGAGGAGGAGAAGGGAAAGAAATAA
TCCGTGAGGGAACATGACAAGCAGAAAGACTGAAGACGAAATAAGGAAGA
AAAAGCAGTAGAAAATGAAGGGTTTGAGACACGCCACTGTCATTGCTGCT
GCTGCTGCTGCCAGTGTGTTTGCAATTGTTGCTTTCAGCTTTGGAACAGA
CTTAATACGTACGCTAAGTATCATGCAGGTCCAGCCAGGAAAGGGGGGTC
GAGGGTGTGAATGATGGTCTTGCCGGCTTCTCCTCCCCTTTATCTACCTC
TTCCCTCCTACATTACCTCCTTCGCGTCCCTCCCTTCCTGTACAAATCTA
CTGGCATCTTACAAACAAACAACGCCTTCCTTCCCTCCCTCCCTCCCCCC
TCCCTCCCTCCCT

protein sequence of NO24G02110.1

>NO24G02110.1-protein ID=NO24G02110.1-protein|Name=NO24G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MDPAALSLKASNIKAAETLIAEGMPERILELHKMHESLRAARHASEAATA
AAQEEKKEEIEEDGKGVLPTSLPSLPTSSSSPSVSTGTGEGGKEGGKEKD
VIVHVNPEVFALFQRVKGLVLRLVEDLGVLKLFVRLASPAIADGSFNSSV
QEDVLEVISSSRSAGLMVLQHICKYFLERAHYVVKSKRYPLVSDFRKAVE
QMDKQQILSLSESVMGIRNSYLLIHDKITKNQDRLKQASKPERHSSHMVC
*

mRNA from alignment at chr24:562006..565628-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO24G02110.1 ID=NO24G02110.1|Name=NO24G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=3623bp|location=Sequence derived from alignment at chr24:562006..565628- (Nannochloropsis oceanica)
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGTAATGTCTCAAAGGGCCTTGGTGGGG
AGCGGGGCGGAGTCTCCTCCTCATGGCCTACGCAACCGCCAATGACGTAG
TCCGAAGGAAACATGTTGCCTGGAATTCAGCCCGCCGGGTAGGGGTGGAT
GTCTAGGCGTGCTGCTGTGCCGTCCGCCTTTTCGCAGTGTTGCCGCAACT
GTGCCACACGTGCTACCGGAGGAGCTCGGTCCAAGCGTAGGGGGAGACCA
GCTGCAATTTGAGGTGGCAACTGACCGTGGGTTGTGCCTGAGGGATTGGA
GTAAGTGAATAGAATTGGTGGAGAAAGCCGATAAGACACAGTTATGGTAG
TGATGTACTAATTGACACACACATGCAGTGTGAGACCCCCTGAGTGACCC
ATACGTCGATGCATCGGATAAGCGTGAGAAAAGATGAGATGCCCCCTCGC
CCCTCGACGAAAGCGACGCAACGTGCAAGCCTGCCACCGCCCTTTCCCAG
GCTATTGATCTCCACAGACGAGCGTGGTGGAGTCAGCCTGCACCATAGAA
TGCCCAAGTGCCAGCTCCAACAATAATCAGGACAAAAAAGAGATACTTTT
GCTCGGGCCGGCATATTCTTTGAAGATCAAGCACTGCTTGGCAAGCCGAG
GCCGCGTAAGAGCAAACAAGAGGATGGATGTTGCGGCCGTGAAGCCGCCT
GGCGATTGCATGCCTGTGTGCATAACGAAGTGCACATTGTGCATATTTAA
GGCTCTTCTAACTGGTAATGTATGCCTTTTGCTTCTCATCCTTGTCCCCA
GGGGCGTCTGGCAGTGAAATTAGGAGGACGCTCGAGAAAAAGAGTAAATT
AAAGAAGCCGTTGGCCCACCTGCCCAAGCAAGCATCACTACACCTTTGCA
GGGCAGAAGGTCTCACCTCTCATTCGCCAGACAAGCCCTCACATATCTAC
GACACCCATACAAACGAAATAACAGTTGAATGTCCAGCGGTATCAGCAGC
CGTGGCGCCCGCAAGGGCGGTGGGGGAGCGGGGGAGGAGGCAAGAAGGAA
ATGGACCCTGCAGCACTTTCCCTGAAGGTCAGAGACAAGGAAGGAGGGAG
GGAGGGAGGGAGGGAGGGGTGAAGGGACAACGTATCTCTTTTTCAATCTT
GACGATACGCGTGATATGCTTGCTTGTCCGCATCTCTACGCCTCGTAAGT
CTCAGCCCATGCCAAAAACCTCACCCACCCACCCCTGCTCTCTTTCCTCC
TTTCCTTCCTTCCCTCCCTCCCTCCTTGCCCTCCCTTCAGGCCTCCAACA
TAAAGGCAGCCGAGACGCTGATTGCCGAGGGAATGCCTGAGCGCATCTTG
GAGCTGCACAAGATGCACGAGGTGAGGGCGGGGAGGGATGGAAGGACGGA
CGGGGAGAGCCTGCTCGTTCCTCGTGTGTCTTTTGTCTTCCTCCTTCCCT
CTGCATTCACTCATACACAAGCCACTCTCTCCTCCCCTGTCTAGTCCCTC
CGTGCGGCCCGTCATGCGTCGGAAGCAGCGACAGCCGCCGCCCAAGAAGA
AAAAAAGGAAGAAATAGAAGAAGATGGCAAAGGCGTGTTACCTACCTCCC
TCCCTTCCCTTCCAACCTCCTCGTCCTCCCCTTCCGTCTCAACCGGCACC
GGGGAAGGCGGGAAAGAGGGCGGGAAGGAGAAGGATGTGATTGTCCACGT
CAATCCGGAAGTTTTCGCGCTCTTTCAGCGGGTGAAGGGGCTGGTGCTGC
GGCTGGTGGAGGACCTAGGAGTGCTTAAGTGAGGGCGGGATGGAACGAGG
GCGGGCGGGCGGGCGGGCGGGCGGGAGAGAGGGAGGGAGAGAGGGAGAGA
GAAGCCATGTTTTTGCTCCTTTAGAGCCGTAGTATCAAATACAGGCTTTG
AGATTCAAATCTCACTCAGTTTATCTGCTTGCGTCCTCTGCCCTCCCTCC
CTCCCTACATCCCAGGCTCTTCGTCCGCCTGGCCTCCCCCGCCATTGCCG
ACGGTTCCTTCAACAGTTCCGTACAAGAAGACGTCCTCGAGGTAGGCTCT
TCCTCCCTCCTTCCCTCCCCCCTCCTTCCATTCTTCTCATTCCTCCGACC
ACCCATCGACCCCCACCTCCCTCCCTCTCTCCCTCCCTCCCGCCCTGCCT
GTCCAGGTCATCTCCTCTTCCCGTAGCGCCGGCCTGATGGTCCTCCAGCA
CATCTGCAAATACTTCTTGGAAAGGGCGCATTACGTGGTGAAGGTGAGGG
AGGGAGGGAGGGAGGGGAGGGTGGGAGGGGAGGGTGGCTTGTGGGCGAGT
AAAGGAACGTTGATGTCGTTTTTATGGGCCGGGCGAAGTGGATATAACGG
GACGAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGACAGCTTTGAAGCCCTGTTTTTACGCTTCTGTCTCCA
TTTTCGTTCCCGTGTCCTTCAAAAGTCAATGTCTCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCTCTCCCTCCCTTATTTCGTCGTTTGACCAGT
ACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
TAGAGCAAAAGGTACCCCCTGGTGTCGGATTTTCGCAAGGCCGTGGAGCA
GATGGACAAACAGCAGATACTGTCCCTGTCAGAGAGTGTGATGGTAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGTGAGGGGTGAC
ACCTAACCTAATTCTGATCCACAGCGTTCTGAAACACACTCATATTCGTC
CCTCCCTTCCTCCTTCCCTCCTTCCCTCCTTTTCCTCCCTCCTTCCCTCT
GAAACTCTCTTGCTTGCTCCCCCCCTTTCACCCTCCCTCCGTCCCTCCCT
CCCAGGGCATCCGCAATTCTTACCTCCTCATCCACGACAAAATCACTAAA
AACCAAGACCGGCTGAAGCAAGCGTCCAAGCCCGAGAGACACTCTTCCCA
CATGGTGTGCTAGAGACGGAGGGAGAGAGAGAGGGACGGGAGGGAGGGAG
GGAGGGAGGGAGAGGGAAGGAGGAGCGAAAGTAAGTGGTATGTACATGAT
ACGTACGTGCGTGTATGTGGCGCGTGGGCTACGAAGAAGAGAGAGGGAGA
GAACGGAGAGAGGAGGAGATGAAATGGAAGAAGAGGGAGGAGGAGAAGGG
AAAGAAATAATCCGTGAGGGAACATGACAAGCAGAAAGACTGAAGACGAA
ATAAGGAAGAAAAAGCAGTAGAAAATGAAGGGTTTGAGACACGCCACTGT
CATTGCTGCTGCTGCTGCTGCCAGTGTGTTTGCAATTGTTGCTTTCAGCT
TTGGAACAGACTTAATACGTACGCTAAGTATCATGCAGGTCCAGCCAGGA
AAGGGGGGTCGAGGGTGTGAATGATGGTCTTGCCGGCTTCTCCTCCCCTT
TATCTACCTCTTCCCTCCTACATTACCTCCTTCGCGTCCCTCCCTTCCTG
TACAAATCTACTGGCATCTTACAAACAAACAACGCCTTCCTTCCCTCCCT
CCCTCCCCCCTCCCTCCCTCCCT

Coding sequence (CDS) from alignment at chr24:562006..565628-

>NO24G02110.1 ID=NO24G02110.1|Name=NO24G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr24:562006..565628- (Nannochloropsis oceanica)
ATGGACCCTGCAGCACTTTCCCTGAAGGCCTCCAACATAAAGGCAGCCGA
GACGCTGATTGCCGAGGGAATGCCTGAGCGCATCTTGGAGCTGCACAAGA
TGCACGAGTCCCTCCGTGCGGCCCGTCATGCGTCGGAAGCAGCGACAGCC
GCCGCCCAAGAAGAAAAAAAGGAAGAAATAGAAGAAGATGGCAAAGGCGT
GTTACCTACCTCCCTCCCTTCCCTTCCAACCTCCTCGTCCTCCCCTTCCG
TCTCAACCGGCACCGGGGAAGGCGGGAAAGAGGGCGGGAAGGAGAAGGAT
GTGATTGTCCACGTCAATCCGGAAGTTTTCGCGCTCTTTCAGCGGGTGAA
GGGGCTGGTGCTGCGGCTGGTGGAGGACCTAGGAGTGCTTAAGCTCTTCG
TCCGCCTGGCCTCCCCCGCCATTGCCGACGGTTCCTTCAACAGTTCCGTA
CAAGAAGACGTCCTCGAGGTCATCTCCTCTTCCCGTAGCGCCGGCCTGAT
GGTCCTCCAGCACATCTGCAAATACTTCTTGGAAAGGGCGCATTACGTGG
TGAAGAGCAAAAGGTACCCCCTGGTGTCGGATTTTCGCAAGGCCGTGGAG
CAGATGGACAAACAGCAGATACTGTCCCTGTCAGAGAGTGTGATGGGCAT
CCGCAATTCTTACCTCCTCATCCACGACAAAATCACTAAAAACCAAGACC
GGCTGAAGCAAGCGTCCAAGCCCGAGAGACACTCTTCCCACATGGTGTGC
TAG

Synonyms

Publications