NO24G02080, NO24G02080 (gene) Nannochloropsis oceanica

Overview
NameNO24G02080
Unique NameNO24G02080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1087
Alignment locationchr24:553146..554232 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:553146..554232 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO24G02080 vs. NCBI_GenBank
Match: EWM20057.1 (hypothetical protein Naga_102002g2 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 5.800e-17
Identity = 69/169 (40.83%), Postives = 96/169 (56.80%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIAR----IEGERKLEVARVQDXXXXXXXXXXXXXXXXELFWKAEVERYKRDLQLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 171
            + GA+ RR       GKG +LRG FSST+HT  GT  G E G       K+ T+      +G +  V+G+ A  V   D+ E+A     ++ +   E+ARV+D                E+FWKAEVER+KR++QLA T DYEPYQAA+  K+ +KRGGT G EE+E++
Sbjct:   26 KAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELG------KKWATI---FQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAEIARVED-----------KRAMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKR-KKRGGTSGSEEKEEE 173          
BLAST of NO24G02080 vs. NCBI_GenBank
Match: EWM20145.1 (hypothetical protein Naga_101508g3 [Nannochloropsis gaditana])

HSP 1 Score: 95.5 bits (236), Expect = 1.700e-16
Identity = 83/172 (48.26%), Postives = 107/172 (62.21%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVAR-------VQDXXXXXXXXXXXXXXXXELFWKAEVERYKRDLQLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 171
            + GA+ RR       GKG +LRG F ST+HT  GT  G E G       K+ T       +G +  V+G+ A  V   D+ EI  IE +   E+A+          XXXXXXXXXXXXXX  E+FWKAEVER+KR++QLA+T DYEPYQAA+  K+ +KRGGTGGLEE+E++
Sbjct:   44 KAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELG------KKWATF---FQGIGAVLGVAGATAVVVRTFDQTEIKYIESKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKR-KKRGGTGGLEEKEEE 205          
BLAST of NO24G02080 vs. NCBI_GenBank
Match: EWM20146.1 (hypothetical protein Naga_101508g1 [Nannochloropsis gaditana])

HSP 1 Score: 94.4 bits (233), Expect = 3.800e-16
Identity = 79/157 (50.32%), Postives = 101/157 (64.33%), Query Frame = 0
Query:   23 GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVAR-------VQDXXXXXXXXXXXXXXXXELFWKAEVERYKRDLQLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 171
            GKG +LRG F ST+HT  GT  G E G       K+ T       +G +  V+G+ A  V   D+ EI  IE +   E+A+          XXXXXXXXXXXXXX  E+FWKAEVER+KR++QLA+T DYEPYQAA+  K+ +KRGGTGGLEE+E++
Sbjct:    7 GKGRVLRGGFYSTAHTGPGTSSGEELG------KKWATF---FQGIGAVLGVAGATAVVVRTFDQTEIKYIESKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKR-KKRGGTGGLEEKEEE 153          
BLAST of NO24G02080 vs. NCBI_GenBank
Match: EWM20009.1 (hypothetical protein Naga_102330g1 [Nannochloropsis gaditana])

HSP 1 Score: 87.8 bits (216), Expect = 3.500e-14
Identity = 82/183 (44.81%), Postives = 107/183 (58.47%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIAR----IEGERKLEV--------------ARVQDXXXXXXXXXXXXXXXXELFWKAEVERYKRDLQLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 171
            + GA+ RR       GKG +LRG FSST+HT  GT  G E G       K+ T       +G +  V+G+ A  V   D+ E+A     ++     E+                 +DXXXXXXXXXXXXXX  E+FWKAEVER KR++QLA+T DYEPYQAA+  K+ +KRGGTGGLEE+E++
Sbjct:   26 KAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELG------KKWATF---FQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSRAAAEIXXXXXXXXXXXXXXXXXEDXXXXXXXXXXXXXXMSEVFWKAEVERIKREVQLAYTQDYEPYQAALVDKR-KKRGGTGGLEEKEEE 198          
BLAST of NO24G02080 vs. NCBI_GenBank
Match: EWM20082.1 (hypothetical protein Naga_101888g1 [Nannochloropsis gaditana])

HSP 1 Score: 84.0 bits (206), Expect = 5.100e-13
Identity = 82/209 (39.23%), Postives = 111/209 (53.11%), Query Frame = 0
Query:    2 LWSS-GMKVAVTVWRRGAVCRRG-KGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIAR----IEGERKLEVAR--------------------------------VQDXXXXXXXXXXXXXXXXELFWKAEVERYKRDLQLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 171
            LW + G + A  +W   +  RRG KG +LRG FSST+HT  GT  G E G       K+ T       +G +  V+G+ A  V   D+ E+A     ++ +   E+A+                                   XXXXXXXXXXX     E+FWKAEVER+KR++QLA+T DYEPYQAA+  K+ +KRGGTGGLEE+E++
Sbjct:   43 LWQARGTRFATNLW---SSMRRGRKGRVLRGGFSSTAHTGPGTSSGEELG------KKWATF---FQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKR-KKRGGTGGLEEKEEE 238          
BLAST of NO24G02080 vs. NCBI_GenBank
Match: EWM20060.1 (hypothetical protein Naga_101993g1 [Nannochloropsis gaditana])

HSP 1 Score: 73.2 bits (178), Expect = 9.000e-10
Identity = 79/187 (42.25%), Postives = 100/187 (53.48%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIA----------------------RIEGERKLEVARVQDXXXXXXXXXXXXXXXXELFWKAEVERYKRDLQLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 171
            + GA+ RR       GKG +LRG FSST+HT  GT  G E G       K+ T       +G +  V+G+ A  V   D+ E+A                                     XXXXXXXXXXXXXXXXE+FWKAEVER+KR++QLA T DYEPYQAA+  K+ + RGGT G EE+E++
Sbjct:   86 KAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELG------KKWATF---FQGIGAVLGVAGATAVVVRTFDQTEMATEIKYIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMFWKAEVERFKREVQLAFTQDYEPYQAALVDKR-KTRGGTSGSEEKEEE 262          
BLAST of NO24G02080 vs. NCBI_GenBank
Match: EWM20114.1 (hypothetical protein Naga_101734g1 [Nannochloropsis gaditana])

HSP 1 Score: 72.8 bits (177), Expect = 1.200e-9
Identity = 61/165 (36.97%), Postives = 84/165 (50.91%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVARVQDXXXXXXXXXXXXXXXXELFWKAEVERYKRDLQLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 171
            + GA+ RR       GKG +LRG FSST+HT  GT  G E G       K+ T+      +G +  V+G+ A  V   D+ E+A                               E+ + AEVER+KR++QLA T DYEPYQAA+  K+ +KRGGT G EE+E++
Sbjct:   90 KAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELG------KKWATI---FQGIGAVLGVAGATAVVVRTFDQTEMA------------------------------PEIKY-AEVERFKREVQLAFTQDYEPYQAALVDKR-KKRGGTSGSEEKEEE 213          
BLAST of NO24G02080 vs. NCBI_GenBank
Match: EWM20066.1 (hypothetical protein Naga_101980g1 [Nannochloropsis gaditana])

HSP 1 Score: 67.8 bits (164), Expect = 3.800e-8
Identity = 73/172 (42.44%), Postives = 97/172 (56.40%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGE-------RKLEVARVQDXXXXXXXXXXXXXXXXELFWKAEVERYKRDLQLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 171
            + GA+ RR       GKG +LRG FSST+HT  GT  G E G       K+ T+      +G +  V+G+ A  V   D+ EI  ++ +                 XXXXXXXXXXXXXXXX          +KR++QLA+T DYEPYQAA+  K+ +KRGGTGGLEE+E++
Sbjct:  107 KAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSNGEELG------KKWATI---FQGIGAVLGVAGATAVVVRTFDQTEIKYVQSKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKREVQLAYTQDYEPYQAALVDKR-KKRGGTGGLEEKEEE 268          
BLAST of NO24G02080 vs. NCBI_GenBank
Match: EWM20119.1 (hypothetical protein Naga_101718g2 [Nannochloropsis gaditana])

HSP 1 Score: 67.4 bits (163), Expect = 4.900e-8
Identity = 79/208 (37.98%), Postives = 102/208 (49.04%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIAR----IEGERKLEV---------------------------------------ARVQDXXXXXXXXXXXXXXXXELFWKAEVERYKRDLQLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 171
            + GA+ RR       GKG +LRG F ST+HT  GT  G E G       K+ T       +G +  V+G+ A  V   D+ E+A     IE +   E+                                            XXXXXXXXXXXXXX  E+FWKAEVER+KR++QLA T DYEPYQAA+  K+ +KRGG  G EE+E++
Sbjct:   89 KAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELG------KKWATF---FQGIGAVLGVAGATAVVVRTFDQTEMATEIKYIESKAAAEIXXXXXXXXXXXXXXXXXEDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKR-KKRGGISGSEEKEEE 286          
The following BLAST results are available for this feature:
BLAST of NO24G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 9
Match NameE-valueIdentityDescription
EWM20057.15.800e-1740.83hypothetical protein Naga_102002g2 [Nannochloropsi... [more]
EWM20145.11.700e-1648.26hypothetical protein Naga_101508g3 [Nannochloropsi... [more]
EWM20146.13.800e-1650.32hypothetical protein Naga_101508g1 [Nannochloropsi... [more]
EWM20009.13.500e-1444.81hypothetical protein Naga_102330g1 [Nannochloropsi... [more]
EWM20082.15.100e-1339.23hypothetical protein Naga_101888g1 [Nannochloropsi... [more]
EWM20060.19.000e-1042.25hypothetical protein Naga_101993g1 [Nannochloropsi... [more]
EWM20114.11.200e-936.97hypothetical protein Naga_101734g1 [Nannochloropsi... [more]
EWM20066.13.800e-842.44hypothetical protein Naga_101980g1 [Nannochloropsi... [more]
EWM20119.14.900e-837.98hypothetical protein Naga_101718g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02080.1NO24G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02080.1NO24G02080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02080 ID=NO24G02080|Name=NO24G02080|organism=Nannochloropsis oceanica|type=gene|length=1087bp
CACGCGTACAGGTTTGTCACGCCGGCTTTTTACAATTGTGCGGGTATCGG
TGTCTGTGGCCCGCGGTGGTGGGGGCCTCCGCCTCTGGGCTCGTTGCTCC
ATGCACAATCATCAAGCAAGCCTCTTCCTCTCGTCTTTGGTCTTGCCCTT
TGGCACCACCAGTGGGGACCCGCGTAGTGTGGTCTAGCGTACCGAAGTGA
CAGTGTCGTCGGAAAGCTGTGGCGTGTTTGGTTGTAACTTCTTTGTGCGC
TTGGAAACACTCATTCGCTGTCCCTCTTCACACAACAACATGCACTGCTT
GCTTGCTGCCACCATCAACGACGACCACCAGAGGGAGCCACGAGTGCATG
CTCTGGAGCTCCGGCATGAAGGTTGCAGTCACGGTGTGGAGACGGGGCGC
AGTTTGCCGTCGAGgtaaggtgaattgtgtggtgcattttggaaggaggg
ctatttttggtcttgggggggggggggtaaaagagatgttcggtgcacgc
gaccgcacactgcgcgaggcatgttgatcgtttcccgtcagatacagtgt
ctatcctgtctgagtcgcaatgtatgttgtgcgggcaagggcttgcggga
aggtgtttacgcacaagcacattcataaacgctaacagGAAAGGGATGCA
TACTGCGGGGGGCTTTCTCCTCGACAAGCCACACGGGAACGGACAGGGGC
AGTGAGGGAGGGTTTCGCCAGCAGTCGATAGACAAATATGAAACGGTCAA
GGTGACGGTAGCTGTCGTCGGCACCATTGCGGCGGTTTCCGGCTCGATCG
CGTACGGCGTCCATCGTCTTGACGAGAAGGAGATTGCGCGCATCGAGGGT
GAGCGGAAGTTGGAAGTCGCGCGTGTGCAGGACAAGGCCGAAACGGAGAT
CAAGCGCGTGGAGGGCGAGCGTAAATTGTCCGAGCTATTTTGGAAGGCAG
AGGTGGAGCGATACAAGCGCGACCTTCAGTTGGCGCATACGTTTGACTAC
GAGCCCTATCAGGCCGCGATATCGCAGAAACAGGGACAAAAAAGGGGAGG
AACTGGAGGACTGGAGGAGGAAGAGAAGAAGGAGTAG
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protein sequence of NO24G02080.1

>NO24G02080.1-protein ID=NO24G02080.1-protein|Name=NO24G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MLWSSGMKVAVTVWRRGAVCRRGKGCILRGAFSSTSHTGTDRGSEGGFRQ
QSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVA
RVQDKAETEIKRVEGERKLSELFWKAEVERYKRDLQLAHTFDYEPYQAAI
SQKQGQKRGGTGGLEEEEKKE*
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Synonyms
Publications