NO24G02080.1, NO24G02080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02080.1
Unique NameNO24G02080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length863
Alignment locationchr24:553146..554232 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:553146..554232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02080.1 vs.
Match: EWM20106.1 (hypothetical protein Naga_101772g1 [Nannochloropsis gaditana])

HSP 1 Score: 139.8 bits (351), Expect = 7.800e-30
Identity = 88/160 (55.00%), Postives = 106/160 (66.25%), Query Frame = 0 
Query:   14 WRRGAVCRRGKGCILRGAFSSTSHTGTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVARVQDKAETEI-------KRVEGERKLSELFWKAEVERYKRDLQLAHTFDYEPYQAAISQKQGQKRGGTGGLEE 167
            WRRGA   RGKG  LRGA  ST+HTGT  GSEGG    S    + V VTVAV+G +AAV+GS A  VH LD+ EI RI+ +   E+ R+ DKA TEI        RVEGER+LSE   +AEVERYK DL+L  T D++PYQAAI + Q  KRGG GG ++
Sbjct:    3 WRRGAQSGRGKGRGLRGASLSTTHTGTGTGSEGG----SDTTIQMVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKAATEIKRIHDKAATEIVQAKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAIRENQ-TKRGGGGGPQD 157
The following BLAST results are available for this feature:
BLAST of NO24G02080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20106.17.800e-3055.00hypothetical protein Naga_101772g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02080NO24G02080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02080.1NO24G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02080.1.cds1NO24G02080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02080.1.cds2NO24G02080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02080.1 ID=NO24G02080.1|Name=NO24G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=863bp
CACGCGTACAGGTTTGTCACGCCGGCTTTTTACAATTGTGCGGGTATCGG
TGTCTGTGGCCCGCGGTGGTGGGGGCCTCCGCCTCTGGGCTCGTTGCTCC
ATGCACAATCATCAAGCAAGCCTCTTCCTCTCGTCTTTGGTCTTGCCCTT
TGGCACCACCAGTGGGGACCCGCGTAGTGTGGTCTAGCGTACCGAAGTGA
CAGTGTCGTCGGAAAGCTGTGGCGTGTTTGGTTGTAACTTCTTTGTGCGC
TTGGAAACACTCATTCGCTGTCCCTCTTCACACAACAACATGCACTGCTT
GCTTGCTGCCACCATCAACGACGACCACCAGAGGGAGCCACGAGTGCATG
CTCTGGAGCTCCGGCATGAAGGTTGCAGTCACGGTGTGGAGACGGGGCGC
AGTTTGCCGTCGAGGAAAGGGATGCATACTGCGGGGGGCTTTCTCCTCGA
CAAGCCACACGGGAACGGACAGGGGCAGTGAGGGAGGGTTTCGCCAGCAG
TCGATAGACAAATATGAAACGGTCAAGGTGACGGTAGCTGTCGTCGGCAC
CATTGCGGCGGTTTCCGGCTCGATCGCGTACGGCGTCCATCGTCTTGACG
AGAAGGAGATTGCGCGCATCGAGGGTGAGCGGAAGTTGGAAGTCGCGCGT
GTGCAGGACAAGGCCGAAACGGAGATCAAGCGCGTGGAGGGCGAGCGTAA
ATTGTCCGAGCTATTTTGGAAGGCAGAGGTGGAGCGATACAAGCGCGACC
TTCAGTTGGCGCATACGTTTGACTACGAGCCCTATCAGGCCGCGATATCG
CAGAAACAGGGACAAAAAAGGGGAGGAACTGGAGGACTGGAGGAGGAAGA
GAAGAAGGAGTAG
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protein sequence of NO24G02080.1

>NO24G02080.1-protein ID=NO24G02080.1-protein|Name=NO24G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MLWSSGMKVAVTVWRRGAVCRRGKGCILRGAFSSTSHTGTDRGSEGGFRQ
QSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVA
RVQDKAETEIKRVEGERKLSELFWKAEVERYKRDLQLAHTFDYEPYQAAI
SQKQGQKRGGTGGLEEEEKKE*
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mRNA from alignment at chr24:553146..554232-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02080.1 ID=NO24G02080.1|Name=NO24G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1087bp|location=Sequence derived from alignment at chr24:553146..554232- (Nannochloropsis oceanica)
CACGCGTACAGGTTTGTCACGCCGGCTTTTTACAATTGTGCGGGTATCGG
TGTCTGTGGCCCGCGGTGGTGGGGGCCTCCGCCTCTGGGCTCGTTGCTCC
ATGCACAATCATCAAGCAAGCCTCTTCCTCTCGTCTTTGGTCTTGCCCTT
TGGCACCACCAGTGGGGACCCGCGTAGTGTGGTCTAGCGTACCGAAGTGA
CAGTGTCGTCGGAAAGCTGTGGCGTGTTTGGTTGTAACTTCTTTGTGCGC
TTGGAAACACTCATTCGCTGTCCCTCTTCACACAACAACATGCACTGCTT
GCTTGCTGCCACCATCAACGACGACCACCAGAGGGAGCCACGAGTGCATG
CTCTGGAGCTCCGGCATGAAGGTTGCAGTCACGGTGTGGAGACGGGGCGC
AGTTTGCCGTCGAGGTAAGGTGAATTGTGTGGTGCATTTTGGAAGGAGGG
CTATTTTTGGTCTTGGGGGGGGGGGGGTAAAAGAGATGTTCGGTGCACGC
GACCGCACACTGCGCGAGGCATGTTGATCGTTTCCCGTCAGATACAGTGT
CTATCCTGTCTGAGTCGCAATGTATGTTGTGCGGGCAAGGGCTTGCGGGA
AGGTGTTTACGCACAAGCACATTCATAAACGCTAACAGGAAAGGGATGCA
TACTGCGGGGGGCTTTCTCCTCGACAAGCCACACGGGAACGGACAGGGGC
AGTGAGGGAGGGTTTCGCCAGCAGTCGATAGACAAATATGAAACGGTCAA
GGTGACGGTAGCTGTCGTCGGCACCATTGCGGCGGTTTCCGGCTCGATCG
CGTACGGCGTCCATCGTCTTGACGAGAAGGAGATTGCGCGCATCGAGGGT
GAGCGGAAGTTGGAAGTCGCGCGTGTGCAGGACAAGGCCGAAACGGAGAT
CAAGCGCGTGGAGGGCGAGCGTAAATTGTCCGAGCTATTTTGGAAGGCAG
AGGTGGAGCGATACAAGCGCGACCTTCAGTTGGCGCATACGTTTGACTAC
GAGCCCTATCAGGCCGCGATATCGCAGAAACAGGGACAAAAAAGGGGAGG
AACTGGAGGACTGGAGGAGGAAGAGAAGAAGGAGTAG
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Coding sequence (CDS) from alignment at chr24:553146..554232-

>NO24G02080.1 ID=NO24G02080.1|Name=NO24G02080.1|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at chr24:553146..554232- (Nannochloropsis oceanica)
ATGCTCTGGAGCTCCGGCATGAAGGTTGCAGTCACGGTGTGGAGACGGGG
CGCAGTTTGCCGTCGAGGAAAGGGATGCATACTGCGGGGGGCTTTCTCCT
CGACAAGCCACACGGGAACGGACAGGGGCAGTGAGGGAGGGTTTCGCCAG
CAGTCGATAGACAAATATGAAACGGTCAAGGTGACGGTAGCTGTCGTCGG
CACCATTGCGGCGGTTTCCGGCTCGATCGCGTACGGCGTCCATCGTCTTG
ACGAGAAGGAGATTGCGCGCATCGAGGGTGAGCGGAAGTTGGAAGTCGCG
CGTGTGCAGGACAAGGCCGAAACGGAGATCAAGCGCGTGGAGGGCGAGCG
TAAATTGTCCGAGCTATTTTGGAAGGCAGAGGTGGAGCGATACAAGCGCG
ACCTTCAGTTGGCGCATACGTTTGACTACGAGCCCTATCAGGCCGCGATA
TCGCAGAAACAGGGACAAAAAAGGGGAGGAACTGGAGGACTGGAGGAGGA
AGAGAAGAAGGAGTAG
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Synonyms
Publications