NO24G02070, NO24G02070 (gene) Nannochloropsis oceanica

Overview
NameNO24G02070
Unique NameNO24G02070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1762
Alignment locationchr24:551205..552966 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:551205..552966 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO24G02070 vs. NCBI_GenBank
Match: EWM20145.1 (hypothetical protein Naga_101508g3 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 6.100e-17
Identity = 78/172 (45.35%), Postives = 102/172 (59.30%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVARVQDKAETEIKRMAGXXXXXXXXXXXXELFWKAEVERYKRDLHLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 178
            + GA+ RR       GKG +LRG F ST+HT  GT  G E G       K+ T       +G +  V+G+ A  V   D+ EI  IE +   E+A+              XXXXXXXXXX  E+FWKAEVER+KR++ LA+T DYEPYQAA+  K+ +KRGGTGGLEE+E++
Sbjct:   44 KAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELG------KKWATF---FQGIGAVLGVAGATAVVVRTFDQTEIKYIESKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKR-KKRGGTGGLEEKEEE 205          
BLAST of NO24G02070 vs. NCBI_GenBank
Match: EWM20057.1 (hypothetical protein Naga_102002g2 [Nannochloropsis gaditana])

HSP 1 Score: 96.3 bits (238), Expect = 1.000e-16
Identity = 71/172 (41.28%), Postives = 95/172 (55.23%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVARVQDKAETEIKRMAGXXXXXXXXXXXXELFWKAEVERYKRDLHLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 178
            + GA+ RR       GKG +LRG FSST+HT  GT  G E G       K+ T+      +G +  V+G+ A  V   D+ E+A        E+  VQ KA  EI R+              E+FWKAEVER+KR++ LA T DYEPYQAA+  K+ +KRGGT G EE+E++
Sbjct:   26 KAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELG------KKWATI---FQGIGAVLGVAGATAVVVRTFDQTEMA-------TEIKYVQSKAAAEIARV-------EDKRAMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKR-KKRGGTSGSEEKEEE 173          
BLAST of NO24G02070 vs. NCBI_GenBank
Match: EWM20146.1 (hypothetical protein Naga_101508g1 [Nannochloropsis gaditana])

HSP 1 Score: 95.9 bits (237), Expect = 1.400e-16
Identity = 74/157 (47.13%), Postives = 96/157 (61.15%), Query Frame = 0
Query:   23 GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVARVQDKAETEIKRMAGXXXXXXXXXXXXELFWKAEVERYKRDLHLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 178
            GKG +LRG F ST+HT  GT  G E G       K+ T       +G +  V+G+ A  V   D+ EI  IE +   E+A+              XXXXXXXXXX  E+FWKAEVER+KR++ LA+T DYEPYQAA+  K+ +KRGGTGGLEE+E++
Sbjct:    7 GKGRVLRGGFYSTAHTGPGTSSGEELG------KKWATF---FQGIGAVLGVAGATAVVVRTFDQTEIKYIESKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKR-KKRGGTGGLEEKEEE 153          
BLAST of NO24G02070 vs. NCBI_GenBank
Match: EWM20009.1 (hypothetical protein Naga_102330g1 [Nannochloropsis gaditana])

HSP 1 Score: 87.8 bits (216), Expect = 3.700e-14
Identity = 81/190 (42.63%), Postives = 104/190 (54.74%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVARVQDKAETEI------------------KRMAGXXXXXXXXXXXXELFWKAEVERYKRDLHLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 178
            + GA+ RR       GKG +LRG FSST+HT  GT  G E G       K+ T       +G +  V+G+ A  V   D+ E+A        E+  VQ +A  EI                       XXXXXXXXXX  E+FWKAEVER KR++ LA+T DYEPYQAA+  K+ +KRGGTGGLEE+E++
Sbjct:   26 KAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELG------KKWATF---FQGIGAVLGVAGATAVVVRTFDQTEMA-------TEIKYVQSRAAAEIXXXXXXXXXXXXXXXXXEDXXXXXXXXXXXXXXMSEVFWKAEVERIKREVQLAYTQDYEPYQAALVDKR-KKRGGTGGLEEKEEE 198          
BLAST of NO24G02070 vs. NCBI_GenBank
Match: EWM20082.1 (hypothetical protein Naga_101888g1 [Nannochloropsis gaditana])

HSP 1 Score: 86.7 bits (213), Expect = 8.200e-14
Identity = 82/216 (37.96%), Postives = 108/216 (50.00%), Query Frame = 0
Query:    2 LWSS-GMKVAVTVWRRGAVCRRG-KGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVARVQDKAETEIKR------------------------------------MAGXXXXXXXXXXXXELFWKAEVERYKRDLHLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 178
            LW + G + A  +W   +  RRG KG +LRG FSST+HT  GT  G E G       K+ T       +G +  V+G+ A  V   D+ E+A        E+  VQ KA  EI +                                       XXXXXXX     E+FWKAEVER+KR++ LA+T DYEPYQAA+  K+ +KRGGTGGLEE+E++
Sbjct:   43 LWQARGTRFATNLW---SSMRRGRKGRVLRGGFSSTAHTGPGTSSGEELG------KKWATF---FQGIGAVLGVAGATAVVVRTFDQTEMA-------TEIKYVQSKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKR-KKRGGTGGLEEKEEE 238          
BLAST of NO24G02070 vs. NCBI_GenBank
Match: EWM20114.1 (hypothetical protein Naga_101734g1 [Nannochloropsis gaditana])

HSP 1 Score: 70.9 bits (172), Expect = 4.700e-9
Identity = 62/172 (36.05%), Postives = 83/172 (48.26%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVARVQDKAETEIKRMAGXXXXXXXXXXXXELFWKAEVERYKRDLHLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 178
            + GA+ RR       GKG +LRG FSST+HT  GT  G E G       K+ T+      +G +  V+G+ A  V   D+ E+A                   EIK                     AEVER+KR++ LA T DYEPYQAA+  K+ +KRGGT G EE+E++
Sbjct:   90 KAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELG------KKWATI---FQGIGAVLGVAGATAVVVRTFDQTEMA------------------PEIK--------------------YAEVERFKREVQLAFTQDYEPYQAALVDKR-KKRGGTSGSEEKEEE 213          
BLAST of NO24G02070 vs. NCBI_GenBank
Match: EWM20060.1 (hypothetical protein Naga_101993g1 [Nannochloropsis gaditana])

HSP 1 Score: 70.5 bits (171), Expect = 6.100e-9
Identity = 74/187 (39.57%), Postives = 95/187 (50.80%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIA---------------RIEGERKLEVARVQDKAETEIKRMAGXXXXXXXXXXXXELFWKAEVERYKRDLHLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 178
            + GA+ RR       GKG +LRG FSST+HT  GT  G E G       K+ T       +G +  V+G+ A  V   D+ E+A                                         XXXXXXXXXXXXE+FWKAEVER+KR++ LA T DYEPYQAA+  K+ + RGGT G EE+E++
Sbjct:   86 KAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELG------KKWATF---FQGIGAVLGVAGATAVVVRTFDQTEMATEIKYIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMFWKAEVERFKREVQLAFTQDYEPYQAALVDKR-KTRGGTSGSEEKEEE 262          
BLAST of NO24G02070 vs. NCBI_GenBank
Match: EWM20066.1 (hypothetical protein Naga_101980g1 [Nannochloropsis gaditana])

HSP 1 Score: 69.3 bits (168), Expect = 1.400e-8
Identity = 68/172 (39.53%), Postives = 92/172 (53.49%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVARVQDKAETEIKRMAGXXXXXXXXXXXXELFWKAEVERYKRDLHLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 178
            + GA+ RR       GKG +LRG FSST+HT  GT  G E G       K+ T+      +G +  V+G+ A  V   D+ EI  ++ +                     XXXXXXXXXXXX          +KR++ LA+T DYEPYQAA+  K+ +KRGGTGGLEE+E++
Sbjct:  107 KAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSNGEELG------KKWATI---FQGIGAVLGVAGATAVVVRTFDQTEIKYVQSKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKREVQLAYTQDYEPYQAALVDKR-KKRGGTGGLEEKEEE 268          
BLAST of NO24G02070 vs. NCBI_GenBank
Match: EWM20119.1 (hypothetical protein Naga_101718g2 [Nannochloropsis gaditana])

HSP 1 Score: 68.9 bits (167), Expect = 1.800e-8
Identity = 76/215 (35.35%), Postives = 100/215 (46.51%), Query Frame = 0
Query:   15 RRGAVCRR-------GKGCILRGAFSSTSHT--GTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVARVQDKAETEI-------------------------------------------KRMAGXXXXXXXXXXXXELFWKAEVERYKRDLHLAHTFDYEPYQAAISQKQGQKRGGTGGLEEEEKK 178
            + GA+ RR       GKG +LRG F ST+HT  GT  G E G       K+ T       +G +  V+G+ A  V   D+ E+A        E+  ++ KA  EI                                                XXXXXXXXXX  E+FWKAEVER+KR++ LA T DYEPYQAA+  K+ +KRGG  G EE+E++
Sbjct:   89 KAGAMARRGSTLPGPGKGRVLRGGFYSTAHTGPGTSSGEELG------KKWATF---FQGIGAVLGVAGATAVVVRTFDQTEMA-------TEIKYIESKAAAEIXXXXXXXXXXXXXXXXXEDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKR-KKRGGISGSEEKEEE 286          
The following BLAST results are available for this feature:
BLAST of NO24G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 9
Match NameE-valueIdentityDescription
EWM20145.16.100e-1745.35hypothetical protein Naga_101508g3 [Nannochloropsi... [more]
EWM20057.11.000e-1641.28hypothetical protein Naga_102002g2 [Nannochloropsi... [more]
EWM20146.11.400e-1647.13hypothetical protein Naga_101508g1 [Nannochloropsi... [more]
EWM20009.13.700e-1442.63hypothetical protein Naga_102330g1 [Nannochloropsi... [more]
EWM20082.18.200e-1437.96hypothetical protein Naga_101888g1 [Nannochloropsi... [more]
EWM20114.14.700e-936.05hypothetical protein Naga_101734g1 [Nannochloropsi... [more]
EWM20060.16.100e-939.57hypothetical protein Naga_101993g1 [Nannochloropsi... [more]
EWM20066.11.400e-839.53hypothetical protein Naga_101980g1 [Nannochloropsi... [more]
EWM20119.11.800e-835.35hypothetical protein Naga_101718g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02070.1NO24G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598740gene_7430Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02070.1NO24G02070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02070 ID=NO24G02070|Name=NO24G02070|organism=Nannochloropsis oceanica|type=gene|length=1762bp
CCAGCGAGTTCTTTCTTTCTCTATTTTGATGTGATGTGCTTGCTCCATTG
ATCCCCTCCGCTCCATGGCCGCCAGCTCCGTTACCGACCTATTCAATCAA
GGCTGCGCTACTTGACAGCAGAGCTCAGCGGTTTCCCCAAGGAGGGGGCC
TCGGGGGCAGACCGTGCGGGTAGGGAGCGAGGCCCTTGGTGGGAGGGAGG
AGGTCATTTCATGACACATGGGTCGTGAGCTCAGTCGCAAAAGCTTTCGA
CCCCGGAGGAAAGCCAACACAGGGTCGTGCTAGAGAGGGCATTGTGTTTG
TTGTCAACAAGACGAGCGTGTAGGTAGACATGGACAGCTGGAGGCAAGAC
GGCACGTAAGGTCAACAACGTTCCGGCCGCAGCAGTTTGTTGTTCAACAA
AGGTTGTGGACCCCATTGCTTGTCTCCCCTTGCCCCGGTCTTGTGTGCGG
CATCACACTCAATACCGTCAGCACCGCTACCCACGCGTACAGGTTTGTCA
CGCCGGCTTTTTACAATTGTGCGGGTATCGGTGTCTGTGGCCCGCGGTGG
TGGGGGCCTCCGCCTCTGGGCTCGTTGCTCCATGCACAATCATCAAGCAA
GCCTCTTCCTCTCGTCTTTGGTCTTGCCCTTTGGCACCACCAGTGGGGAC
CCGCGTAGTGTGGTCTAGCGTACCGAAGTGACAGTGTCGTCGGAAAGCTG
TGGCGTGTTTGGTTGTAACTTCTTTGTGCGCTTGGAAACACTCATTCGCT
GTCCCTCTTCACACAACAACATGCACTGCTTGCTTGCTGCCACCATCAAC
GACGACCACCAGAGGGAGCCACGAGTGCATGCTCTGGAGCTCCGGCATGA
AGGTTGCAGTCACGGTGTGGAGACGGGGCGCAGTTTGCCGTCGAGgtaag
gtgaattgtgtggtgcattttggaaggagggctatttttggtcttggggg
ggggtaagagagatgttcggtgcacgcgaccgcacactgcgcgaggcatg
ttgatcgtttcccgtcagatacagtgtctatcctgtctgagtcgcaatgt
atgttgtgcgggcaagggcttgcgggaaggtgtttacgcacaagcacatt
cataaacgctaacagGAAAGGGATGCATACTGCGGGGGGCTTTCTCCTCG
ACAAGCCACACGGGAACAGACAGGGGCAGTGAGGGAGGGTTTCGCCAGCA
GTCGATAGACAAATATGAAACGGTCAAGGTGACGGTAGCTGTCGTCGGCA
CCATTGCGGCGGTTTCCGGCTCGATCGCGTACGGCGTCCATCGTCTTGAC
GAGAAGGAGATTGCGCGCATCGAGGGTGAGCGGAAGTTGGAAGTCGCGCG
TGTGCAGGACAAGGCCGAAACGGAGATCAAGCGCATGGCGGGCGATGTTG
CGCGTGTGGAGGGCGAGCGTAAATTGTCCGAGCTATTTTGGAAGGCAGAG
GTGGAGCGATACAAGCGCGACCTTCATTTGGCGCATACGTTTGACTACGA
GCCCTATCAGGCCGCGATATCGCAGAAACAGGGACAAAAAAGGGGAGGAA
CTGGAGGACTGGAGGAGGAAGAGAAGAAGGAGTAGCTTTAGTATCCTGCG
TAGATAAACAAGGAAATGTACACACTGTGCAGAGTCAAAATAGGTAAAAG
ACAATGTGTGAAAGGCATGTGCAGTAGGCGGGATAAATATGAAGAGGTGG
TTGTGAGGGGTGTGGTACTCATACACGACGAATGCAATAACGAGGTCTCC
CAAGAAGTGTAA
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protein sequence of NO24G02070.1

>NO24G02070.1-protein ID=NO24G02070.1-protein|Name=NO24G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MLWSSGMKVAVTVWRRGAVCRRGKGCILRGAFSSTSHTGTDRGSEGGFRQ
QSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVA
RVQDKAETEIKRMAGDVARVEGERKLSELFWKAEVERYKRDLHLAHTFDY
EPYQAAISQKQGQKRGGTGGLEEEEKKE*
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Synonyms
Publications