NO24G02070.1, NO24G02070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02070.1
Unique NameNO24G02070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1542
Alignment locationchr24:551205..552966 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:551205..552966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02070.1 vs.
Match: EWM20106.1 (hypothetical protein Naga_101772g1 [Nannochloropsis gaditana])

HSP 1 Score: 152.1 bits (383), Expect = 1.600e-33
Identity = 91/160 (56.88%), Postives = 109/160 (68.12%), Query Frame = 0 
Query:   14 WRRGAVCRRGKGCILRGAFSSTSHTGTDRGSEGGFRQQSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVARVQDKAETEIKRMAGDVARVEGERKLSELFWKAEVERYKRDLHLAHTFDYEPYQAAISQKQGQKRGGTGGLEE 174
            WRRGA   RGKG  LRGA  ST+HTGT  GSEGG    S    + V VTVAV+G +AAV+GS A  VH LD+ EI RI+ +   E+ R+ DKA TEI +   DVARVEGER+LSE   +AEVERYK DL L  T D++PYQAAI + Q  KRGG GG ++
Sbjct:    3 WRRGAQSGRGKGRGLRGASLSTTHTGTGTGSEGG----SDTTIQMVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKAATEIKRIHDKAATEIVQAKADVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAIRENQ-TKRGGGGGPQD 157
The following BLAST results are available for this feature:
BLAST of NO24G02070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20106.11.600e-3356.88hypothetical protein Naga_101772g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02070NO24G02070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02070.1NO24G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02070.1.cds1NO24G02070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02070.1.cds2NO24G02070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02070.1 ID=NO24G02070.1|Name=NO24G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp
CCAGCGAGTTCTTTCTTTCTCTATTTTGATGTGATGTGCTTGCTCCATTG
ATCCCCTCCGCTCCATGGCCGCCAGCTCCGTTACCGACCTATTCAATCAA
GGCTGCGCTACTTGACAGCAGAGCTCAGCGGTTTCCCCAAGGAGGGGGCC
TCGGGGGCAGACCGTGCGGGTAGGGAGCGAGGCCCTTGGTGGGAGGGAGG
AGGTCATTTCATGACACATGGGTCGTGAGCTCAGTCGCAAAAGCTTTCGA
CCCCGGAGGAAAGCCAACACAGGGTCGTGCTAGAGAGGGCATTGTGTTTG
TTGTCAACAAGACGAGCGTGTAGGTAGACATGGACAGCTGGAGGCAAGAC
GGCACGTAAGGTCAACAACGTTCCGGCCGCAGCAGTTTGTTGTTCAACAA
AGGTTGTGGACCCCATTGCTTGTCTCCCCTTGCCCCGGTCTTGTGTGCGG
CATCACACTCAATACCGTCAGCACCGCTACCCACGCGTACAGGTTTGTCA
CGCCGGCTTTTTACAATTGTGCGGGTATCGGTGTCTGTGGCCCGCGGTGG
TGGGGGCCTCCGCCTCTGGGCTCGTTGCTCCATGCACAATCATCAAGCAA
GCCTCTTCCTCTCGTCTTTGGTCTTGCCCTTTGGCACCACCAGTGGGGAC
CCGCGTAGTGTGGTCTAGCGTACCGAAGTGACAGTGTCGTCGGAAAGCTG
TGGCGTGTTTGGTTGTAACTTCTTTGTGCGCTTGGAAACACTCATTCGCT
GTCCCTCTTCACACAACAACATGCACTGCTTGCTTGCTGCCACCATCAAC
GACGACCACCAGAGGGAGCCACGAGTGCATGCTCTGGAGCTCCGGCATGA
AGGTTGCAGTCACGGTGTGGAGACGGGGCGCAGTTTGCCGTCGAGGAAAG
GGATGCATACTGCGGGGGGCTTTCTCCTCGACAAGCCACACGGGAACAGA
CAGGGGCAGTGAGGGAGGGTTTCGCCAGCAGTCGATAGACAAATATGAAA
CGGTCAAGGTGACGGTAGCTGTCGTCGGCACCATTGCGGCGGTTTCCGGC
TCGATCGCGTACGGCGTCCATCGTCTTGACGAGAAGGAGATTGCGCGCAT
CGAGGGTGAGCGGAAGTTGGAAGTCGCGCGTGTGCAGGACAAGGCCGAAA
CGGAGATCAAGCGCATGGCGGGCGATGTTGCGCGTGTGGAGGGCGAGCGT
AAATTGTCCGAGCTATTTTGGAAGGCAGAGGTGGAGCGATACAAGCGCGA
CCTTCATTTGGCGCATACGTTTGACTACGAGCCCTATCAGGCCGCGATAT
CGCAGAAACAGGGACAAAAAAGGGGAGGAACTGGAGGACTGGAGGAGGAA
GAGAAGAAGGAGTAGCTTTAGTATCCTGCGTAGATAAACAAGGAAATGTA
CACACTGTGCAGAGTCAAAATAGGTAAAAGACAATGTGTGAAAGGCATGT
GCAGTAGGCGGGATAAATATGAAGAGGTGGTTGTGAGGGGTGTGGTACTC
ATACACGACGAATGCAATAACGAGGTCTCCCAAGAAGTGTAA
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protein sequence of NO24G02070.1

>NO24G02070.1-protein ID=NO24G02070.1-protein|Name=NO24G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MLWSSGMKVAVTVWRRGAVCRRGKGCILRGAFSSTSHTGTDRGSEGGFRQ
QSIDKYETVKVTVAVVGTIAAVSGSIAYGVHRLDEKEIARIEGERKLEVA
RVQDKAETEIKRMAGDVARVEGERKLSELFWKAEVERYKRDLHLAHTFDY
EPYQAAISQKQGQKRGGTGGLEEEEKKE*
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mRNA from alignment at chr24:551205..552966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02070.1 ID=NO24G02070.1|Name=NO24G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1762bp|location=Sequence derived from alignment at chr24:551205..552966- (Nannochloropsis oceanica)
CCAGCGAGTTCTTTCTTTCTCTATTTTGATGTGATGTGCTTGCTCCATTG
ATCCCCTCCGCTCCATGGCCGCCAGCTCCGTTACCGACCTATTCAATCAA
GGCTGCGCTACTTGACAGCAGAGCTCAGCGGTTTCCCCAAGGAGGGGGCC
TCGGGGGCAGACCGTGCGGGTAGGGAGCGAGGCCCTTGGTGGGAGGGAGG
AGGTCATTTCATGACACATGGGTCGTGAGCTCAGTCGCAAAAGCTTTCGA
CCCCGGAGGAAAGCCAACACAGGGTCGTGCTAGAGAGGGCATTGTGTTTG
TTGTCAACAAGACGAGCGTGTAGGTAGACATGGACAGCTGGAGGCAAGAC
GGCACGTAAGGTCAACAACGTTCCGGCCGCAGCAGTTTGTTGTTCAACAA
AGGTTGTGGACCCCATTGCTTGTCTCCCCTTGCCCCGGTCTTGTGTGCGG
CATCACACTCAATACCGTCAGCACCGCTACCCACGCGTACAGGTTTGTCA
CGCCGGCTTTTTACAATTGTGCGGGTATCGGTGTCTGTGGCCCGCGGTGG
TGGGGGCCTCCGCCTCTGGGCTCGTTGCTCCATGCACAATCATCAAGCAA
GCCTCTTCCTCTCGTCTTTGGTCTTGCCCTTTGGCACCACCAGTGGGGAC
CCGCGTAGTGTGGTCTAGCGTACCGAAGTGACAGTGTCGTCGGAAAGCTG
TGGCGTGTTTGGTTGTAACTTCTTTGTGCGCTTGGAAACACTCATTCGCT
GTCCCTCTTCACACAACAACATGCACTGCTTGCTTGCTGCCACCATCAAC
GACGACCACCAGAGGGAGCCACGAGTGCATGCTCTGGAGCTCCGGCATGA
AGGTTGCAGTCACGGTGTGGAGACGGGGCGCAGTTTGCCGTCGAGGTAAG
GTGAATTGTGTGGTGCATTTTGGAAGGAGGGCTATTTTTGGTCTTGGGGG
GGGGTAAGAGAGATGTTCGGTGCACGCGACCGCACACTGCGCGAGGCATG
TTGATCGTTTCCCGTCAGATACAGTGTCTATCCTGTCTGAGTCGCAATGT
ATGTTGTGCGGGCAAGGGCTTGCGGGAAGGTGTTTACGCACAAGCACATT
CATAAACGCTAACAGGAAAGGGATGCATACTGCGGGGGGCTTTCTCCTCG
ACAAGCCACACGGGAACAGACAGGGGCAGTGAGGGAGGGTTTCGCCAGCA
GTCGATAGACAAATATGAAACGGTCAAGGTGACGGTAGCTGTCGTCGGCA
CCATTGCGGCGGTTTCCGGCTCGATCGCGTACGGCGTCCATCGTCTTGAC
GAGAAGGAGATTGCGCGCATCGAGGGTGAGCGGAAGTTGGAAGTCGCGCG
TGTGCAGGACAAGGCCGAAACGGAGATCAAGCGCATGGCGGGCGATGTTG
CGCGTGTGGAGGGCGAGCGTAAATTGTCCGAGCTATTTTGGAAGGCAGAG
GTGGAGCGATACAAGCGCGACCTTCATTTGGCGCATACGTTTGACTACGA
GCCCTATCAGGCCGCGATATCGCAGAAACAGGGACAAAAAAGGGGAGGAA
CTGGAGGACTGGAGGAGGAAGAGAAGAAGGAGTAGCTTTAGTATCCTGCG
TAGATAAACAAGGAAATGTACACACTGTGCAGAGTCAAAATAGGTAAAAG
ACAATGTGTGAAAGGCATGTGCAGTAGGCGGGATAAATATGAAGAGGTGG
TTGTGAGGGGTGTGGTACTCATACACGACGAATGCAATAACGAGGTCTCC
CAAGAAGTGTAA
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Coding sequence (CDS) from alignment at chr24:551205..552966-

>NO24G02070.1 ID=NO24G02070.1|Name=NO24G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at chr24:551205..552966- (Nannochloropsis oceanica)
ATGCTCTGGAGCTCCGGCATGAAGGTTGCAGTCACGGTGTGGAGACGGGG
CGCAGTTTGCCGTCGAGGAAAGGGATGCATACTGCGGGGGGCTTTCTCCT
CGACAAGCCACACGGGAACAGACAGGGGCAGTGAGGGAGGGTTTCGCCAG
CAGTCGATAGACAAATATGAAACGGTCAAGGTGACGGTAGCTGTCGTCGG
CACCATTGCGGCGGTTTCCGGCTCGATCGCGTACGGCGTCCATCGTCTTG
ACGAGAAGGAGATTGCGCGCATCGAGGGTGAGCGGAAGTTGGAAGTCGCG
CGTGTGCAGGACAAGGCCGAAACGGAGATCAAGCGCATGGCGGGCGATGT
TGCGCGTGTGGAGGGCGAGCGTAAATTGTCCGAGCTATTTTGGAAGGCAG
AGGTGGAGCGATACAAGCGCGACCTTCATTTGGCGCATACGTTTGACTAC
GAGCCCTATCAGGCCGCGATATCGCAGAAACAGGGACAAAAAAGGGGAGG
AACTGGAGGACTGGAGGAGGAAGAGAAGAAGGAGTAG
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Synonyms
Publications