NO24G02050, NO24G02050 (gene) Nannochloropsis oceanica

Overview
NameNO24G02050
Unique NameNO24G02050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length443
Alignment locationchr24:542664..543106 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:542664..543106 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO24G02050 vs. NCBI_GenBank
Match: EWM24417.1 (hypothetical protein Naga_101269g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 107.1 bits (266), Expect = 2.500e-20
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 0
Query:    1 MLTTPFSWKEGFTPKERWLGGAAPEHLDSLSELKKEMEGMDYVLVREEEMPLVIRQHSRLYELIAAQATVWQ 73
            MLTTPFSWKE FTPKE+WLGGAAP+  DS +ELK+ M G+ + L++E+EMPL+I QH+RL+ELI   ATVWQ
Sbjct:   54 MLTTPFSWKECFTPKEKWLGGAAPDGKDSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQ 125          
BLAST of NO24G02050 vs. NCBI_GenBank
Match: OLP85894.1 (Meiotically up-regulated gene 158 protein [Symbiodinium microadriaticum])

HSP 1 Score: 73.6 bits (179), Expect = 3.100e-10
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 0
Query:    1 MLTTPFSWKEGFTPKERWLGG----AAPEHLDSLSELKKEMEGMDYVLVREEEMPLVIRQHSRLYELIAAQATVWQ 73
            ++ TPFSW E FTPK++WLGG         + S  +LKK ME   +  + E+++PL+IR+H R Y+ I ++AT+W+
Sbjct: 3371 VILTPFSWLEDFTPKQKWLGGFMDPITQTQVRSKDQLKKLMEERGFAKIGEQQVPLLIREHQRKYQYIVSEATIWR 3446          
BLAST of NO24G02050 vs. NCBI_GenBank
Match: OLP85880.1 (Cyclin-L1-1 [Symbiodinium microadriaticum])

HSP 1 Score: 73.6 bits (179), Expect = 3.100e-10
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 0
Query:    1 MLTTPFSWKEGFTPKERWLGG----AAPEHLDSLSELKKEMEGMDYVLVREEEMPLVIRQHSRLYELIAAQATVWQ 73
            ++ TPFSW E FTPK++WLGG         + S  +LKK ME   +  + E+++PL+IR+H R Y+ I ++AT+W+
Sbjct: 1406 VILTPFSWLEDFTPKQKWLGGFMDPITQTQVRSKDQLKKLMEERGFAKIGEQQVPLLIREHQRKYQYIVSEATIWR 1481          
BLAST of NO24G02050 vs. NCBI_GenBank
Match: XP_002292254.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED90229.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 72.4 bits (176), Expect = 6.800e-10
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 0
Query:    1 MLTTPFSWKEGFTPKERWLGG----AAPEHLDSLSELKKEMEGMDYVLVREEEMPLVIRQHSRLYELIAAQATVWQ 73
            ++ TPF+W E FTP+ +WLGG     + E + S  +LK+ ME + +  + EE+MPLVIR+H R Y+ I ++AT W+
Sbjct:  913 VMVTPFTWLEEFTPRSKWLGGFHDPVSQEPMYSKDKLKEIMEELGFDKIHEEQMPLVIREHRRKYQYIISEATGWR 988          
BLAST of NO24G02050 vs. NCBI_GenBank
Match: OEU08449.1 (hypothetical protein FRACYDRAFT_212712 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 70.5 bits (171), Expect = 2.600e-9
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 0
Query:    1 MLTTPFSWKEGFTPKERWLGG----AAPEHLDSLSELKKEMEGMDYVLVREEEMPLVIRQHSRLYELIAAQATVWQ 73
            ++ TPFSW   FTP+ +WLGG     +   + S  EL+  ME   +  + EEEMPLVIR+H+R Y+ I ++AT W+
Sbjct:  759 VMVTPFSWLTEFTPRGKWLGGFLDPVSGTPIRSKDELQSIMENNGFTKIHEEEMPLVIREHARKYQYIVSEATGWK 834          
BLAST of NO24G02050 vs. NCBI_GenBank
Match: GAX27842.1 (hypothetical protein FisN_13Hh051 [Fistulifera solaris])

HSP 1 Score: 69.7 bits (169), Expect = 4.400e-9
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 0
Query:    1 MLTTPFSWKEGFTPKERWLGGAAPEHLD----SLSELKKEMEGMDYVLVREEEMPLVIRQHSRLYELIAAQATVWQ 73
            ++ TP+SW   FTP+ERWLGG    H +    S S L+  ME   +  + EE++PL+IR+H R Y+ I ++AT W+
Sbjct:  229 VIVTPYSWLCEFTPRERWLGGFTDPHTNESVYSKSTLQTVMESDGFEKIHEEQVPLIIREHQRKYQYIVSEATGWR 304          
BLAST of NO24G02050 vs. NCBI_GenBank
Match: WP_079433228.1 (5-histidylcysteine sulfoxide synthase [Zoogloea sp. LCSB751])

HSP 1 Score: 68.6 bits (166), Expect = 9.800e-9
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 0
Query:    2 LTTPFSWKEGFTPKERWLGGAAP--EHLDSLSELKKEMEGMDYVLVREEEMPLVIRQHSRLYELIAAQATVWQGPR 76
            L +P+SW E FTP+E WLGG     + + S   LK  +    +VL REEE+PLVIR+H+R Y+ I     +WQ  R
Sbjct:  724 LFSPYSWLEQFTPREAWLGGYEKDGQAVRSADTLKAFLAAEGFVLRREEEVPLVIREHARKYQFIVTHGMLWQRER 799          
BLAST of NO24G02050 vs. NCBI_GenBank
Match: OUW64761.1 (putative 4-mercaptohistidine N1-methyltransferase [Opitutales bacterium TMED207])

HSP 1 Score: 68.6 bits (166), Expect = 9.800e-9
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 0
Query:    2 LTTPFSWKEGFTPKERWLGGAAPEHLDSLSELKKEMEGM-DYVLVREEEMPLVIRQHSRLYELIAAQATVW 72
            +TTPF+W E FTPK+RWLG  A    DS S L++ +EG   + L++  +MP +IR+HSR ++   AQA+ W
Sbjct:  179 MTTPFTWLESFTPKDRWLGANAE---DSFSGLREALEGQGGFKLLKSWDMPFLIREHSRKFQFSIAQASRW 246          
BLAST of NO24G02050 vs. NCBI_GenBank
Match: PDH26556.1 (putative 4-mercaptohistidine N1-methyltransferase [Puniceicoccaceae bacterium MED-G32])

HSP 1 Score: 68.6 bits (166), Expect = 9.800e-9
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 0
Query:    2 LTTPFSWKEGFTPKERWLGGAAPEHLDSLSELKKEMEGM-DYVLVREEEMPLVIRQHSRLYELIAAQATVW 72
            +TTPF+W E FTPK+RWLG  A    DS S L++ +EG   + L++  +MP +IR+HSR ++   AQA+ W
Sbjct:  179 MTTPFTWLESFTPKDRWLGANAE---DSFSGLREALEGQGGFKLLKSWDMPFLIREHSRKFQFSIAQASRW 246          
BLAST of NO24G02050 vs. NCBI_GenBank
Match: ART37598.1 (E387 [uncultured bacterium])

HSP 1 Score: 68.2 bits (165), Expect = 1.300e-8
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 0
Query:    2 LTTPFSWKEGFTPKERWLGGAAPE--HLDSLSELKKEMEGMDYVLVREEEMPLVIRQHSRLYELIAAQATVWQ 73
            L +P+SW E FTP   WLGG A +   ++S   L+       +VL RE EMPLVIR+HSR Y+ I A A +WQ
Sbjct:  726 LFSPYSWLEQFTPHGAWLGGYAKDGHEVNSADALRGLFTQQGFVLRREAEMPLVIREHSRKYQYIVAHAMLWQ 798          
The following BLAST results are available for this feature:
BLAST of NO24G02050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24417.12.500e-2066.67hypothetical protein Naga_101269g1, partial [Nanno... [more]
OLP85894.13.100e-1042.11Meiotically up-regulated gene 158 protein [Symbiod... [more]
OLP85880.13.100e-1042.11Cyclin-L1-1 [Symbiodinium microadriaticum][more]
XP_002292254.16.800e-1043.42predicted protein [Thalassiosira pseudonana CCMP13... [more]
OEU08449.12.600e-943.42hypothetical protein FRACYDRAFT_212712 [Fragilario... [more]
GAX27842.14.400e-942.11hypothetical protein FisN_13Hh051 [Fistulifera sol... [more]
WP_079433228.19.800e-944.745-histidylcysteine sulfoxide synthase [Zoogloea sp... [more]
OUW64761.19.800e-946.48putative 4-mercaptohistidine N1-methyltransferase ... [more]
PDH26556.19.800e-946.48putative 4-mercaptohistidine N1-methyltransferase ... [more]
ART37598.11.300e-847.95E387 [uncultured bacterium][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02050.1NO24G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101269g1gene6065Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02050.1NO24G02050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02050 ID=NO24G02050|Name=NO24G02050|organism=Nannochloropsis oceanica|type=gene|length=443bp
ATGTTAACGACGCCTTTTTCATGGAAGGAGGGATTTACGCCCAAGGAAAG
GTGGCTGGGGgtaagcagggagggaaggaaagagggaggaagggaaggag
ggaggaagggaaggagggaggggaggggaggggagaagaagtgtatagat
gtatgtatcactaccctgcctctctcgctggtataccgactcatccctcc
ctcttgccctattcccttccctgcctctctccccctcccttcttccctct
ctccttttctccctccttcccatagGGCGCGGCCCCGGAGCATCTTGATT
CGCTGTCAGAGCTGAAGAAGGAGATGGAGGGTATGGATTACGTGTTGGTG
AGGGAGGAGGAGATGCCACTGGTGATCCGACAGCACTCTCGTTTGTACGA
ACTGATTGCGGCGCAGGCGACGGTGTGGCAAGGACCGCGATAG
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protein sequence of NO24G02050.1

>NO24G02050.1-protein ID=NO24G02050.1-protein|Name=NO24G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MLTTPFSWKEGFTPKERWLGGAAPEHLDSLSELKKEMEGMDYVLVREEEM
PLVIRQHSRLYELIAAQATVWQGPR*
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Synonyms
Publications