NO24G02050.1, NO24G02050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02050.1
Unique NameNO24G02050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length228
Alignment locationchr24:542664..543106 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:542664..543106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02050.1 vs.
Match: EWM24417.1 (hypothetical protein Naga_101269g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 107.1 bits (266), Expect = 2.500e-20
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 0 
Query:    1 MLTTPFSWKEGFTPKERWLGGAAPEHLDSLSELKKEMEGMDYVLVREEEMPLVIRQHSRLYELIAAQATVWQ 73
            MLTTPFSWKE FTPKE+WLGGAAP+  DS +ELK+ M G+ + L++E+EMPL+I QH+RL+ELI   ATVWQ
Sbjct:   54 MLTTPFSWKECFTPKEKWLGGAAPDGKDSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQ 125
The following BLAST results are available for this feature:
BLAST of NO24G02050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24417.12.500e-2066.67hypothetical protein Naga_101269g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02050NO24G02050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02050.1NO24G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02050.1.cds1NO24G02050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02050.1.cds2NO24G02050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02050.1 ID=NO24G02050.1|Name=NO24G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=228bp
ATGTTAACGACGCCTTTTTCATGGAAGGAGGGATTTACGCCCAAGGAAAG
GTGGCTGGGGGGCGCGGCCCCGGAGCATCTTGATTCGCTGTCAGAGCTGA
AGAAGGAGATGGAGGGTATGGATTACGTGTTGGTGAGGGAGGAGGAGATG
CCACTGGTGATCCGACAGCACTCTCGTTTGTACGAACTGATTGCGGCGCA
GGCGACGGTGTGGCAAGGACCGCGATAG
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protein sequence of NO24G02050.1

>NO24G02050.1-protein ID=NO24G02050.1-protein|Name=NO24G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MLTTPFSWKEGFTPKERWLGGAAPEHLDSLSELKKEMEGMDYVLVREEEM
PLVIRQHSRLYELIAAQATVWQGPR*
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mRNA from alignment at chr24:542664..543106-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02050.1 ID=NO24G02050.1|Name=NO24G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=443bp|location=Sequence derived from alignment at chr24:542664..543106- (Nannochloropsis oceanica)
ATGTTAACGACGCCTTTTTCATGGAAGGAGGGATTTACGCCCAAGGAAAG
GTGGCTGGGGGTAAGCAGGGAGGGAAGGAAAGAGGGAGGAAGGGAAGGAG
GGAGGAAGGGAAGGAGGGAGGGGAGGGGAGGGGAGAAGAAGTGTATAGAT
GTATGTATCACTACCCTGCCTCTCTCGCTGGTATACCGACTCATCCCTCC
CTCTTGCCCTATTCCCTTCCCTGCCTCTCTCCCCCTCCCTTCTTCCCTCT
CTCCTTTTCTCCCTCCTTCCCATAGGGCGCGGCCCCGGAGCATCTTGATT
CGCTGTCAGAGCTGAAGAAGGAGATGGAGGGTATGGATTACGTGTTGGTG
AGGGAGGAGGAGATGCCACTGGTGATCCGACAGCACTCTCGTTTGTACGA
ACTGATTGCGGCGCAGGCGACGGTGTGGCAAGGACCGCGATAG
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Coding sequence (CDS) from alignment at chr24:542664..543106-

>NO24G02050.1 ID=NO24G02050.1|Name=NO24G02050.1|organism=Nannochloropsis oceanica|type=CDS|length=228bp|location=Sequence derived from alignment at chr24:542664..543106- (Nannochloropsis oceanica)
ATGTTAACGACGCCTTTTTCATGGAAGGAGGGATTTACGCCCAAGGAAAG
GTGGCTGGGGGGCGCGGCCCCGGAGCATCTTGATTCGCTGTCAGAGCTGA
AGAAGGAGATGGAGGGTATGGATTACGTGTTGGTGAGGGAGGAGGAGATG
CCACTGGTGATCCGACAGCACTCTCGTTTGTACGAACTGATTGCGGCGCA
GGCGACGGTGTGGCAAGGACCGCGATAG
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Synonyms
Publications