NO24G01980, NO24G01980 (gene) Nannochloropsis oceanica

Overview
NameNO24G01980
Unique NameNO24G01980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1474
Alignment locationchr24:518702..520175 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:518702..520175 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G01980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01980.1NO24G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598710gene_7424Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01980.1NO24G01980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01980 ID=NO24G01980|Name=NO24G01980|organism=Nannochloropsis oceanica|type=gene|length=1474bp
CATAAGGAGAAATAGCGACAGGTATGCTCGAGGCAAAGGCAAGCCGTCGG
TTCACTTCACGAAATGGAACATGGACAGCCGCGTCGCAAACACGGCTATT
GTTGACTTGCAGGCAACATTTCGTGACGTATGCACGTGGTCGTAAAACCG
TTCTATCAGGGTATCAGTTTCCAGTTTGGCGGTCGGGATATGGAGGAAGC
TGCCAGTGACCGCGCAGCAAGTCGACCTCCCCTCCCCCGCCATGGTGACC
TGACTCCCCTTTTGACCACACAACCAGTCACTTCCCCCACACCCACGAAA
AAGGGATACAGGTCCCACCACCATCACTACGAGGTGACAATACGGATTCT
ATGCTTGGGTTGGTAGATTACTCTTCCGGCGAAGAAGAGACAATCGgtac
gaccctccttcctccctccctcccatccccctccttcccccatccttatt
acgtacactcctcccttccttccccctcttccacttcctcagCCAAGAAA
CTCGACGAGAAAAAAATCGAGGCGAAGGAAGCCGCGGATGCCGCTCTTGC
CGCTGCCGCCTCCTCTTCTTCCTCCTCAGACAACGATGACGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAAAGAGGAGAGAAACGAGACTCCTCA
TCCTCCTCCCGCCTGCACAGTTGCAACGACAGCAAGAAGCCTAATATTTT
GCCTTCAGCCTTGGACCTGCTGGCCACGACAGAAGCGCCGGCCTTCTTGT
CCGTGCCCGCGCCACTCCCAGAGTTTGATGTGCAACCTATAGTTGACACG
AGgtgagggaaggagagagggagggtgggaggaagggagggagtgatgtc
aaggtcttgaattcatccttcatcccatcaaacatatatcttggtaacac
tattaaatagACAACAAGGCGACCGGAAACAGCGCTTTGGAAGGCAGCAG
CAGCAGCAGCAGCAGCATGGTCTTCGTGGTGGAGGAGGACGAGATCAAGA
ACAAGGAGGAGGGGCAGGAGGCAGAGAATACACAGGCGATATCCCTCCAC
CAATGAAACGGCAGCCACCACCTGTGAAAGCAGCAGCAGCAGCAGCAGCA
GCAGTAGCAATAGCAGCGGAGGAGAAGAAGAAGAAGGACAGACTAAACAT
GAAGGAGAGgtttgtgaacgaatgccaccctctcttcctccttctcttct
ctccctccctcccttcctcactcccctctcccttccgctttctcgtcaaa
aagcctcccaacccacaagtcaatctctcttccctcctccctccctccct
ccctccctccttctctccctccctccctccctccctccctctctctctcc
ctccctccctccatctcctcccagGGTTAAAGAGCAGCGAATGAAGGGAC
AGAGTGGTATTGGGGAAGATTTCCGATCCTGGAAAACAGACGAAGAGATG
CGGATGAGGCAGCAGTATGATTAG
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protein sequence of NO24G01980.1

>NO24G01980.1-protein ID=NO24G01980.1-protein|Name=NO24G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MLGLVDYSSGEEETIAKKLDEKKIEAKEAADAALAAAASSSSSSDNDDEE
EEEEEEEEEERGEKRDSSSSSRLHSCNDSKKPNILPSALDLLATTEAPAF
LSVPAPLPEFDVQPIVDTRQQGDRKQRFGRQQQQQQQHGLRGGGGRDQEQ
GGGAGGREYTGDIPPPMKRQPPPVKAAAAAAAAVAIAAEEKKKKDRLNMK
ERVKEQRMKGQSGIGEDFRSWKTDEEMRMRQQYD*
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Synonyms
Publications