NO24G01980.1, NO24G01980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01980.1
Unique NameNO24G01980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1055
Alignment locationchr24:518702..520175 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:518702..520175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G01980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01980NO24G01980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01980.1NO24G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01980.1.cds1NO24G01980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01980.1.cds2NO24G01980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01980.1.cds3NO24G01980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01980.1.cds4NO24G01980.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01980.1 ID=NO24G01980.1|Name=NO24G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1055bp
CATAAGGAGAAATAGCGACAGGTATGCTCGAGGCAAAGGCAAGCCGTCGG
TTCACTTCACGAAATGGAACATGGACAGCCGCGTCGCAAACACGGCTATT
GTTGACTTGCAGGCAACATTTCGTGACGTATGCACGTGGTCGTAAAACCG
TTCTATCAGGGTATCAGTTTCCAGTTTGGCGGTCGGGATATGGAGGAAGC
TGCCAGTGACCGCGCAGCAAGTCGACCTCCCCTCCCCCGCCATGGTGACC
TGACTCCCCTTTTGACCACACAACCAGTCACTTCCCCCACACCCACGAAA
AAGGGATACAGGTCCCACCACCATCACTACGAGGTGACAATACGGATTCT
ATGCTTGGGTTGGTAGATTACTCTTCCGGCGAAGAAGAGACAATCGCCAA
GAAACTCGACGAGAAAAAAATCGAGGCGAAGGAAGCCGCGGATGCCGCTC
TTGCCGCTGCCGCCTCCTCTTCTTCCTCCTCAGACAACGATGACGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGAGGAGAGAAACGAGACTC
CTCATCCTCCTCCCGCCTGCACAGTTGCAACGACAGCAAGAAGCCTAATA
TTTTGCCTTCAGCCTTGGACCTGCTGGCCACGACAGAAGCGCCGGCCTTC
TTGTCCGTGCCCGCGCCACTCCCAGAGTTTGATGTGCAACCTATAGTTGA
CACGAGACAACAAGGCGACCGGAAACAGCGCTTTGGAAGGCAGCAGCAGC
AGCAGCAGCAGCATGGTCTTCGTGGTGGAGGAGGACGAGATCAAGAACAA
GGAGGAGGGGCAGGAGGCAGAGAATACACAGGCGATATCCCTCCACCAAT
GAAACGGCAGCCACCACCTGTGAAAGCAGCAGCAGCAGCAGCAGCAGCAG
TAGCAATAGCAGCGGAGGAGAAGAAGAAGAAGGACAGACTAAACATGAAG
GAGAGGGTTAAAGAGCAGCGAATGAAGGGACAGAGTGGTATTGGGGAAGA
TTTCCGATCCTGGAAAACAGACGAAGAGATGCGGATGAGGCAGCAGTATG
ATTAG
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protein sequence of NO24G01980.1

>NO24G01980.1-protein ID=NO24G01980.1-protein|Name=NO24G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MLGLVDYSSGEEETIAKKLDEKKIEAKEAADAALAAAASSSSSSDNDDEE
EEEEEEEEEERGEKRDSSSSSRLHSCNDSKKPNILPSALDLLATTEAPAF
LSVPAPLPEFDVQPIVDTRQQGDRKQRFGRQQQQQQQHGLRGGGGRDQEQ
GGGAGGREYTGDIPPPMKRQPPPVKAAAAAAAAVAIAAEEKKKKDRLNMK
ERVKEQRMKGQSGIGEDFRSWKTDEEMRMRQQYD*
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mRNA from alignment at chr24:518702..520175+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01980.1 ID=NO24G01980.1|Name=NO24G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1474bp|location=Sequence derived from alignment at chr24:518702..520175+ (Nannochloropsis oceanica)
CATAAGGAGAAATAGCGACAGGTATGCTCGAGGCAAAGGCAAGCCGTCGG
TTCACTTCACGAAATGGAACATGGACAGCCGCGTCGCAAACACGGCTATT
GTTGACTTGCAGGCAACATTTCGTGACGTATGCACGTGGTCGTAAAACCG
TTCTATCAGGGTATCAGTTTCCAGTTTGGCGGTCGGGATATGGAGGAAGC
TGCCAGTGACCGCGCAGCAAGTCGACCTCCCCTCCCCCGCCATGGTGACC
TGACTCCCCTTTTGACCACACAACCAGTCACTTCCCCCACACCCACGAAA
AAGGGATACAGGTCCCACCACCATCACTACGAGGTGACAATACGGATTCT
ATGCTTGGGTTGGTAGATTACTCTTCCGGCGAAGAAGAGACAATCGGTAC
GACCCTCCTTCCTCCCTCCCTCCCATCCCCCTCCTTCCCCCATCCTTATT
ACGTACACTCCTCCCTTCCTTCCCCCTCTTCCACTTCCTCAGCCAAGAAA
CTCGACGAGAAAAAAATCGAGGCGAAGGAAGCCGCGGATGCCGCTCTTGC
CGCTGCCGCCTCCTCTTCTTCCTCCTCAGACAACGATGACGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAAAGAGGAGAGAAACGAGACTCCTCA
TCCTCCTCCCGCCTGCACAGTTGCAACGACAGCAAGAAGCCTAATATTTT
GCCTTCAGCCTTGGACCTGCTGGCCACGACAGAAGCGCCGGCCTTCTTGT
CCGTGCCCGCGCCACTCCCAGAGTTTGATGTGCAACCTATAGTTGACACG
AGGTGAGGGAAGGAGAGAGGGAGGGTGGGAGGAAGGGAGGGAGTGATGTC
AAGGTCTTGAATTCATCCTTCATCCCATCAAACATATATCTTGGTAACAC
TATTAAATAGACAACAAGGCGACCGGAAACAGCGCTTTGGAAGGCAGCAG
CAGCAGCAGCAGCAGCATGGTCTTCGTGGTGGAGGAGGACGAGATCAAGA
ACAAGGAGGAGGGGCAGGAGGCAGAGAATACACAGGCGATATCCCTCCAC
CAATGAAACGGCAGCCACCACCTGTGAAAGCAGCAGCAGCAGCAGCAGCA
GCAGTAGCAATAGCAGCGGAGGAGAAGAAGAAGAAGGACAGACTAAACAT
GAAGGAGAGGTTTGTGAACGAATGCCACCCTCTCTTCCTCCTTCTCTTCT
CTCCCTCCCTCCCTTCCTCACTCCCCTCTCCCTTCCGCTTTCTCGTCAAA
AAGCCTCCCAACCCACAAGTCAATCTCTCTTCCCTCCTCCCTCCCTCCCT
CCCTCCCTCCTTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCC
CTCCCTCCCTCCATCTCCTCCCAGGGTTAAAGAGCAGCGAATGAAGGGAC
AGAGTGGTATTGGGGAAGATTTCCGATCCTGGAAAACAGACGAAGAGATG
CGGATGAGGCAGCAGTATGATTAG
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Coding sequence (CDS) from alignment at chr24:518702..520175+

>NO24G01980.1 ID=NO24G01980.1|Name=NO24G01980.1|organism=Nannochloropsis oceanica|type=CDS|length=705bp|location=Sequence derived from alignment at chr24:518702..520175+ (Nannochloropsis oceanica)
ATGCTTGGGTTGGTAGATTACTCTTCCGGCGAAGAAGAGACAATCGCCAA
GAAACTCGACGAGAAAAAAATCGAGGCGAAGGAAGCCGCGGATGCCGCTC
TTGCCGCTGCCGCCTCCTCTTCTTCCTCCTCAGACAACGATGACGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGAGGAGAGAAACGAGACTC
CTCATCCTCCTCCCGCCTGCACAGTTGCAACGACAGCAAGAAGCCTAATA
TTTTGCCTTCAGCCTTGGACCTGCTGGCCACGACAGAAGCGCCGGCCTTC
TTGTCCGTGCCCGCGCCACTCCCAGAGTTTGATGTGCAACCTATAGTTGA
CACGAGACAACAAGGCGACCGGAAACAGCGCTTTGGAAGGCAGCAGCAGC
AGCAGCAGCAGCATGGTCTTCGTGGTGGAGGAGGACGAGATCAAGAACAA
GGAGGAGGGGCAGGAGGCAGAGAATACACAGGCGATATCCCTCCACCAAT
GAAACGGCAGCCACCACCTGTGAAAGCAGCAGCAGCAGCAGCAGCAGCAG
TAGCAATAGCAGCGGAGGAGAAGAAGAAGAAGGACAGACTAAACATGAAG
GAGAGGGTTAAAGAGCAGCGAATGAAGGGACAGAGTGGTATTGGGGAAGA
TTTCCGATCCTGGAAAACAGACGAAGAGATGCGGATGAGGCAGCAGTATG
ATTAG
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Synonyms
Publications