NO24G01930, NO24G01930 (gene) Nannochloropsis oceanica

Overview
NameNO24G01930
Unique NameNO24G01930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1858
Alignment locationchr24:509213..511070 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:509213..511070 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037393Bud22/SRFB1
IPR015158Bud22_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO24G01930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01930.1NO24G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|134631gene_7418Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01930.1NO24G01930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01930 ID=NO24G01930|Name=NO24G01930|organism=Nannochloropsis oceanica|type=gene|length=1858bp
ATGGCCGTCCTCAAGAAGCGGCAAAAGCCTGAACGGACACCAGCAGAGCG
CCTACAACATACTgtacgtctcgtgatggagctgcacagcatgtcttctg
ccctcgatgcatccctctttctgtttttcctctagttacaatccaaactt
tttctgtaactcgccatccccatccctacggtctcgttgcctctcaatct
gattctcctcttcccccttcccgcgctctccttcacctcatcctccatca
ttcacagGCCACGGTCCAGATCCAGCGAGAATTAAAGAAAGTCAAGGCTT
TTCTATTGCAGCGCCTGGTGAAAAAATGCCGGAAGCTTCGGGAAGGAGGA
GGGGAAGGGAAGAAGGGAAAAGAGGGATTGAAGGAGAAAGGGGAAAAGGA
GGGGGAGGAAAGCGGAGAGGAAGTGATGGAGGGACCACAAGAGGACGAAG
AGAATGAAGAGAAGGAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGGGAATATTCAAGGGGGTAGCGCCCACG
AAGAACCTCCCAGCACAACTCCCACTTCCACTGCAGGCACCCATCCCTCC
TCCTCCTTTCCTTCTCATTCTTCATCAGCACTCTCCGCAGTGCTTGCGGA
GATTCAACAGATTAAAACCATGTTAACTCCTGAAGCATTCACTCCTATAT
GCCTGCGACGCCTCGGAGTCGCTTATACAGGGACAGAGCACGCGGACCTA
TCATCCAAAATAGAGGAGGGAGAGATGAAGGAAGGGAAGGCTGGAGGGGT
AAATCCGTTAGTGCAAGCCATGAGGCACCCGAGGATGATCGCGTTGTTAA
AGGAGTTGGATGGCAGgtaatggggggaagaaggggtgaaggaaagaaag
gaggaaggcagtctcgagagaagaattgactcaatttccgtttgagcagc
ccccacattcatgcgctctcccctccactccactctcatcactccaaatc
cgtatataacagGGTGACCGACATCCGTCGTGGTGGTGATGGCAAGAAGA
ACAAGCCAAAAACTGCCAAGCGGCAACGTACTGTCGCCGCGTCCAACGGC
GATGGGAATGGAAGGCCGCCCAGGTCCCACTATGAGCGACAGGGAGGGAG
GGAGGGAGCAAGAGGAGCAGCTGGAGGAGCACGCCGCGTCACGTCCTACG
ATGGATCTTCGGTGTTTGTCGATTCGCTGTCCGGATATGTGTCAAGGGCG
GGGAGGGAGGGAAGGGGGGAGGAGGATGAGATGGATACGTATGGGTATAA
GGAAGCGAAAAAGAATAGGCCGGGACAACGGGCGAGGAGGAAGCGGTTTG
ATGCAATGCAAGAGGCACACGCGACTGTGAGTGGGGGGGGTAAAGGGGGA
GGGAGAGGAAGAGGGGGAGGGAGAGGAGGAAGAGGGTCAGGGGGAGGGAG
AGGCGGGGGCGGGTTTGATCGAGGCGCACCACGAGGAGGCGGAGTAGAAA
GGGAAGGATCAACACGGTCGTTCTTTCCCTCTACATCTTCCTCGTTCTTT
TCTGCCCCTTCTGTAGCTACTGCTGCTGCCGGAGCTCCTCCCCCTTCTGC
TGCTGCTGCTGCTGCTTCTGCGAACTTGCACCCGTCGTGGATTGCCAAGC
AGGCTCAAAAGGCAAAGGAGGGTGGAGGGGGTGTAGGCGTCTTCCAAGGG
AAAAAGATAACATTTGGAGATGATGATTAGGATAGACAGAGGTGTTTACC
AAAAAGTTGAACAAAATTAAAGTTTTGACTGACAAGTGGAAAGGTTTGGA
GGAGAGAG
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protein sequence of NO24G01930.1

>NO24G01930.1-protein ID=NO24G01930.1-protein|Name=NO24G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MAVLKKRQKPERTPAERLQHTATVQIQRELKKVKAFLLQRLVKKCRKLRE
GGGEGKKGKEGLKEKGEKEGEESGEEVMEGPQEDEENEEKEKKKEEEEEE
EEEEEEEEEEEEEEEEEEEEEEEEEEGNIQGGSAHEEPPSTTPTSTAGTH
PSSSFPSHSSSALSAVLAEIQQIKTMLTPEAFTPICLRRLGVAYTGTEHA
DLSSKIEEGEMKEGKAGGVNPLVQAMRHPRMIALLKELDGRVTDIRRGGD
GKKNKPKTAKRQRTVAASNGDGNGRPPRSHYERQGGREGARGAAGGARRV
TSYDGSSVFVDSLSGYVSRAGREGRGEEDEMDTYGYKEAKKNRPGQRARR
KRFDAMQEAHATVSGGGKGGGRGRGGGRGGRGSGGGRGGGGFDRGAPRGG
GVEREGSTRSFFPSTSSSFFSAPSVATAAAGAPPPSAAAAAASANLHPSW
IAKQAQKAKEGGGGVGVFQGKKITFGDDD*
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Synonyms
Publications