NO24G01930.1, NO24G01930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01930.1
Unique NameNO24G01930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1518
Alignment locationchr24:509213..511070 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:509213..511070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G01930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01930NO24G01930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01930.1NO24G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01930.1.cds1NO24G01930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01930.1.cds2NO24G01930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01930.1.cds3NO24G01930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01930.1 ID=NO24G01930.1|Name=NO24G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1518bp
ATGGCCGTCCTCAAGAAGCGGCAAAAGCCTGAACGGACACCAGCAGAGCG
CCTACAACATACTGCCACGGTCCAGATCCAGCGAGAATTAAAGAAAGTCA
AGGCTTTTCTATTGCAGCGCCTGGTGAAAAAATGCCGGAAGCTTCGGGAA
GGAGGAGGGGAAGGGAAGAAGGGAAAAGAGGGATTGAAGGAGAAAGGGGA
AAAGGAGGGGGAGGAAAGCGGAGAGGAAGTGATGGAGGGACCACAAGAGG
ACGAAGAGAATGAAGAGAAGGAGAAGAAGAAGGAGGAGGAGGAGGAGGAG
GAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAATATTCAAGGGGGTAGCG
CCCACGAAGAACCTCCCAGCACAACTCCCACTTCCACTGCAGGCACCCAT
CCCTCCTCCTCCTTTCCTTCTCATTCTTCATCAGCACTCTCCGCAGTGCT
TGCGGAGATTCAACAGATTAAAACCATGTTAACTCCTGAAGCATTCACTC
CTATATGCCTGCGACGCCTCGGAGTCGCTTATACAGGGACAGAGCACGCG
GACCTATCATCCAAAATAGAGGAGGGAGAGATGAAGGAAGGGAAGGCTGG
AGGGGTAAATCCGTTAGTGCAAGCCATGAGGCACCCGAGGATGATCGCGT
TGTTAAAGGAGTTGGATGGCAGGGTGACCGACATCCGTCGTGGTGGTGAT
GGCAAGAAGAACAAGCCAAAAACTGCCAAGCGGCAACGTACTGTCGCCGC
GTCCAACGGCGATGGGAATGGAAGGCCGCCCAGGTCCCACTATGAGCGAC
AGGGAGGGAGGGAGGGAGCAAGAGGAGCAGCTGGAGGAGCACGCCGCGTC
ACGTCCTACGATGGATCTTCGGTGTTTGTCGATTCGCTGTCCGGATATGT
GTCAAGGGCGGGGAGGGAGGGAAGGGGGGAGGAGGATGAGATGGATACGT
ATGGGTATAAGGAAGCGAAAAAGAATAGGCCGGGACAACGGGCGAGGAGG
AAGCGGTTTGATGCAATGCAAGAGGCACACGCGACTGTGAGTGGGGGGGG
TAAAGGGGGAGGGAGAGGAAGAGGGGGAGGGAGAGGAGGAAGAGGGTCAG
GGGGAGGGAGAGGCGGGGGCGGGTTTGATCGAGGCGCACCACGAGGAGGC
GGAGTAGAAAGGGAAGGATCAACACGGTCGTTCTTTCCCTCTACATCTTC
CTCGTTCTTTTCTGCCCCTTCTGTAGCTACTGCTGCTGCCGGAGCTCCTC
CCCCTTCTGCTGCTGCTGCTGCTGCTTCTGCGAACTTGCACCCGTCGTGG
ATTGCCAAGCAGGCTCAAAAGGCAAAGGAGGGTGGAGGGGGTGTAGGCGT
CTTCCAAGGGAAAAAGATAACATTTGGAGATGATGATTAGGATAGACAGA
GGTGTTTACCAAAAAGTTGAACAAAATTAAAGTTTTGACTGACAAGTGGA
AAGGTTTGGAGGAGAGAG
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protein sequence of NO24G01930.1

>NO24G01930.1-protein ID=NO24G01930.1-protein|Name=NO24G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MAVLKKRQKPERTPAERLQHTATVQIQRELKKVKAFLLQRLVKKCRKLRE
GGGEGKKGKEGLKEKGEKEGEESGEEVMEGPQEDEENEEKEKKKEEEEEE
EEEEEEEEEEEEEEEEEEEEEEEEEEGNIQGGSAHEEPPSTTPTSTAGTH
PSSSFPSHSSSALSAVLAEIQQIKTMLTPEAFTPICLRRLGVAYTGTEHA
DLSSKIEEGEMKEGKAGGVNPLVQAMRHPRMIALLKELDGRVTDIRRGGD
GKKNKPKTAKRQRTVAASNGDGNGRPPRSHYERQGGREGARGAAGGARRV
TSYDGSSVFVDSLSGYVSRAGREGRGEEDEMDTYGYKEAKKNRPGQRARR
KRFDAMQEAHATVSGGGKGGGRGRGGGRGGRGSGGGRGGGGFDRGAPRGG
GVEREGSTRSFFPSTSSSFFSAPSVATAAAGAPPPSAAAAAASANLHPSW
IAKQAQKAKEGGGGVGVFQGKKITFGDDD*
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mRNA from alignment at chr24:509213..511070+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01930.1 ID=NO24G01930.1|Name=NO24G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1858bp|location=Sequence derived from alignment at chr24:509213..511070+ (Nannochloropsis oceanica)
ATGGCCGTCCTCAAGAAGCGGCAAAAGCCTGAACGGACACCAGCAGAGCG
CCTACAACATACTGTACGTCTCGTGATGGAGCTGCACAGCATGTCTTCTG
CCCTCGATGCATCCCTCTTTCTGTTTTTCCTCTAGTTACAATCCAAACTT
TTTCTGTAACTCGCCATCCCCATCCCTACGGTCTCGTTGCCTCTCAATCT
GATTCTCCTCTTCCCCCTTCCCGCGCTCTCCTTCACCTCATCCTCCATCA
TTCACAGGCCACGGTCCAGATCCAGCGAGAATTAAAGAAAGTCAAGGCTT
TTCTATTGCAGCGCCTGGTGAAAAAATGCCGGAAGCTTCGGGAAGGAGGA
GGGGAAGGGAAGAAGGGAAAAGAGGGATTGAAGGAGAAAGGGGAAAAGGA
GGGGGAGGAAAGCGGAGAGGAAGTGATGGAGGGACCACAAGAGGACGAAG
AGAATGAAGAGAAGGAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGGGAATATTCAAGGGGGTAGCGCCCACG
AAGAACCTCCCAGCACAACTCCCACTTCCACTGCAGGCACCCATCCCTCC
TCCTCCTTTCCTTCTCATTCTTCATCAGCACTCTCCGCAGTGCTTGCGGA
GATTCAACAGATTAAAACCATGTTAACTCCTGAAGCATTCACTCCTATAT
GCCTGCGACGCCTCGGAGTCGCTTATACAGGGACAGAGCACGCGGACCTA
TCATCCAAAATAGAGGAGGGAGAGATGAAGGAAGGGAAGGCTGGAGGGGT
AAATCCGTTAGTGCAAGCCATGAGGCACCCGAGGATGATCGCGTTGTTAA
AGGAGTTGGATGGCAGGTAATGGGGGGAAGAAGGGGTGAAGGAAAGAAAG
GAGGAAGGCAGTCTCGAGAGAAGAATTGACTCAATTTCCGTTTGAGCAGC
CCCCACATTCATGCGCTCTCCCCTCCACTCCACTCTCATCACTCCAAATC
CGTATATAACAGGGTGACCGACATCCGTCGTGGTGGTGATGGCAAGAAGA
ACAAGCCAAAAACTGCCAAGCGGCAACGTACTGTCGCCGCGTCCAACGGC
GATGGGAATGGAAGGCCGCCCAGGTCCCACTATGAGCGACAGGGAGGGAG
GGAGGGAGCAAGAGGAGCAGCTGGAGGAGCACGCCGCGTCACGTCCTACG
ATGGATCTTCGGTGTTTGTCGATTCGCTGTCCGGATATGTGTCAAGGGCG
GGGAGGGAGGGAAGGGGGGAGGAGGATGAGATGGATACGTATGGGTATAA
GGAAGCGAAAAAGAATAGGCCGGGACAACGGGCGAGGAGGAAGCGGTTTG
ATGCAATGCAAGAGGCACACGCGACTGTGAGTGGGGGGGGTAAAGGGGGA
GGGAGAGGAAGAGGGGGAGGGAGAGGAGGAAGAGGGTCAGGGGGAGGGAG
AGGCGGGGGCGGGTTTGATCGAGGCGCACCACGAGGAGGCGGAGTAGAAA
GGGAAGGATCAACACGGTCGTTCTTTCCCTCTACATCTTCCTCGTTCTTT
TCTGCCCCTTCTGTAGCTACTGCTGCTGCCGGAGCTCCTCCCCCTTCTGC
TGCTGCTGCTGCTGCTTCTGCGAACTTGCACCCGTCGTGGATTGCCAAGC
AGGCTCAAAAGGCAAAGGAGGGTGGAGGGGGTGTAGGCGTCTTCCAAGGG
AAAAAGATAACATTTGGAGATGATGATTAGGATAGACAGAGGTGTTTACC
AAAAAGTTGAACAAAATTAAAGTTTTGACTGACAAGTGGAAAGGTTTGGA
GGAGAGAG
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Coding sequence (CDS) from alignment at chr24:509213..511070+

>NO24G01930.1 ID=NO24G01930.1|Name=NO24G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at chr24:509213..511070+ (Nannochloropsis oceanica)
ATGGCCGTCCTCAAGAAGCGGCAAAAGCCTGAACGGACACCAGCAGAGCG
CCTACAACATACTGCCACGGTCCAGATCCAGCGAGAATTAAAGAAAGTCA
AGGCTTTTCTATTGCAGCGCCTGGTGAAAAAATGCCGGAAGCTTCGGGAA
GGAGGAGGGGAAGGGAAGAAGGGAAAAGAGGGATTGAAGGAGAAAGGGGA
AAAGGAGGGGGAGGAAAGCGGAGAGGAAGTGATGGAGGGACCACAAGAGG
ACGAAGAGAATGAAGAGAAGGAGAAGAAGAAGGAGGAGGAGGAGGAGGAG
GAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAATATTCAAGGGGGTAGCG
CCCACGAAGAACCTCCCAGCACAACTCCCACTTCCACTGCAGGCACCCAT
CCCTCCTCCTCCTTTCCTTCTCATTCTTCATCAGCACTCTCCGCAGTGCT
TGCGGAGATTCAACAGATTAAAACCATGTTAACTCCTGAAGCATTCACTC
CTATATGCCTGCGACGCCTCGGAGTCGCTTATACAGGGACAGAGCACGCG
GACCTATCATCCAAAATAGAGGAGGGAGAGATGAAGGAAGGGAAGGCTGG
AGGGGTAAATCCGTTAGTGCAAGCCATGAGGCACCCGAGGATGATCGCGT
TGTTAAAGGAGTTGGATGGCAGGGTGACCGACATCCGTCGTGGTGGTGAT
GGCAAGAAGAACAAGCCAAAAACTGCCAAGCGGCAACGTACTGTCGCCGC
GTCCAACGGCGATGGGAATGGAAGGCCGCCCAGGTCCCACTATGAGCGAC
AGGGAGGGAGGGAGGGAGCAAGAGGAGCAGCTGGAGGAGCACGCCGCGTC
ACGTCCTACGATGGATCTTCGGTGTTTGTCGATTCGCTGTCCGGATATGT
GTCAAGGGCGGGGAGGGAGGGAAGGGGGGAGGAGGATGAGATGGATACGT
ATGGGTATAAGGAAGCGAAAAAGAATAGGCCGGGACAACGGGCGAGGAGG
AAGCGGTTTGATGCAATGCAAGAGGCACACGCGACTGTGAGTGGGGGGGG
TAAAGGGGGAGGGAGAGGAAGAGGGGGAGGGAGAGGAGGAAGAGGGTCAG
GGGGAGGGAGAGGCGGGGGCGGGTTTGATCGAGGCGCACCACGAGGAGGC
GGAGTAGAAAGGGAAGGATCAACACGGTCGTTCTTTCCCTCTACATCTTC
CTCGTTCTTTTCTGCCCCTTCTGTAGCTACTGCTGCTGCCGGAGCTCCTC
CCCCTTCTGCTGCTGCTGCTGCTGCTTCTGCGAACTTGCACCCGTCGTGG
ATTGCCAAGCAGGCTCAAAAGGCAAAGGAGGGTGGAGGGGGTGTAGGCGT
CTTCCAAGGGAAAAAGATAACATTTGGAGATGATGATTAG
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Synonyms
Publications