NO24G01920, NO24G01920 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G01920 vs. NCBI_GenBank
Match: XP_008611963.1 (hypothetical protein, variant [Saprolegnia diclina VS20] >EQC34557.1 hypothetical protein, variant [Saprolegnia diclina VS20]) HSP 1 Score: 139.0 bits (349), Expect = 2.400e-29 Identity = 87/240 (36.25%), Postives = 116/240 (48.33%), Query Frame = 0 Query: 40 GKGELERICGGDQRHSSTMSKRFLRSLRFSSSSSHVTSNPASPSLLFRPMPFDIPTVLAALVRQHHITPSLRPVRE-NLTQCLEALNYANTVAAHVIALSKTPFDYSNDGHLRLLVALWKALKPDVALPAXXXXXXXXXXXXXXXXAPGKAADRASTSRWNELGFQGKDPATDLRGMGLLGLVQLVYYAESYPEKARSTLLESEHPRRWFPWAVAGINVSSFVLALLVDDRALDGRLVEE 279 G+ ELERI +M R S+ S + +F PF+ LAAL R I S + E NL Q + N V A VIAL +D +ND H +L LW+ LKPDV + T W E+GFQG DP TD R MG+L L QL+YY YPE+ARS L+ S HP +W+P+A+ GIN+++F L L++DR LD R ++ Sbjct: 35 GQTELERIVAKPADDVRSMLVRLRTSIALDDSLKD------TQMAIFGFKPFETDVTLAALARTKKIDLSKSLIAEANLRQSFKTFLAVNNVYAKVIALKDESYDSTNDAHEAMLEELWRNLKPDV-----------------------RRTGGRHTKEWGEIGFQGTDPMTDFRSMGVLSLHQLLYYTSKYPEEARSALVHSNHPTQWYPFAITGINITNF-LVELINDRLLDARFYDK 244
BLAST of NO24G01920 vs. NCBI_GenBank
Match: XP_012195273.1 (hypothetical protein SPRG_19077 [Saprolegnia parasitica CBS 223.65] >KDO34241.1 hypothetical protein SPRG_19077 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 135.2 bits (339), Expect = 3.500e-28 Identity = 85/240 (35.42%), Postives = 114/240 (47.50%), Query Frame = 0 Query: 40 GKGELERICGGDQRHSSTMSKRFLRSLRFSSSSSHVTSNPASPSLLFRPMPFDIPTVLAALVRQHHITPSLRPVRE-NLTQCLEALNYANTVAAHVIALSKTPFDYSNDGHLRLLVALWKALKPDVALPAXXXXXXXXXXXXXXXXAPGKAADRASTSRWNELGFQGKDPATDLRGMGLLGLVQLVYYAESYPEKARSTLLESEHPRRWFPWAVAGINVSSFVLALLVDDRALDGRLVEE 279 G+ ELERI +M R S+ S + +F PF+ L AL R I S + E NL Q + N V A V AL +D +ND H +L LW+ LKPDV + T W E+GFQG DP TD R MG+L L QL+YY YPE+ARS L+ S HP +W+P+A+ GIN+++F L L++DR LD R ++ Sbjct: 35 GQTELERIVAKPADDVRSMLVRLRTSIALDESLKD------TQMAIFGFKPFETDAALEALARTKKIDLSKSLIAEANLRQSFKTFLAVNNVYAKVFALKDESYDSTNDAHEAMLEELWRNLKPDV-----------------------RRTGGRLTKEWGEIGFQGTDPMTDFRSMGVLSLHQLLYYTSKYPEEARSALVHSNHPTQWYPFAITGINITNF-LVELINDRLLDARFYDK 244
BLAST of NO24G01920 vs. NCBI_GenBank
Match: XP_008611962.1 (hypothetical protein SDRG_07882 [Saprolegnia diclina VS20] >EQC34556.1 hypothetical protein SDRG_07882 [Saprolegnia diclina VS20]) HSP 1 Score: 134.0 bits (336), Expect = 7.800e-28 Identity = 87/242 (35.95%), Postives = 116/242 (47.93%), Query Frame = 0 Query: 40 GKGELERICGGDQRHSSTMSKRFLRSLRFSSSSSHVTSNPASPSLLFRPMPFDIPTVLAALVRQHHITPSLRPVRE-NLTQCLEALNYANTVAAHVIALSKTPFDYSNDGHLRLLVALWKALKPDVALPAXXXXXXXXXXXXXXXXAPGKAADRASTSRWNELGFQGKDPATDLRGMGLLGLVQLVYYAESYPEKAR--STLLESEHPRRWFPWAVAGINVSSFVLALLVDDRALDGRLVEE 279 G+ ELERI +M R S+ S + +F PF+ LAAL R I S + E NL Q + N V A VIAL +D +ND H +L LW+ LKPDV + T W E+GFQG DP TD R MG+L L QL+YY YPE+AR S L+ S HP +W+P+A+ GIN+++F L L++DR LD R ++ Sbjct: 35 GQTELERIVAKPADDVRSMLVRLRTSIALDDSLKD------TQMAIFGFKPFETDVTLAALARTKKIDLSKSLIAEANLRQSFKTFLAVNNVYAKVIALKDESYDSTNDAHEAMLEELWRNLKPDV-----------------------RRTGGRHTKEWGEIGFQGTDPMTDFRSMGVLSLHQLLYYTSKYPEEARSLSALVHSNHPTQWYPFAITGINITNF-LVELINDRLLDARFYDK 246
BLAST of NO24G01920 vs. NCBI_GenBank
Match: XP_009844465.1 (hypothetical protein H257_17380 [Aphanomyces astaci] >ETV66035.1 hypothetical protein H257_17380 [Aphanomyces astaci]) HSP 1 Score: 133.7 bits (335), Expect = 1.000e-27 Identity = 83/246 (33.74%), Postives = 120/246 (48.78%), Query Frame = 0 Query: 35 VSLVTGKGELERICGGDQRHSSTMSKRFLRSLRFSSSSSHVTSNPASPSLLFRPMPFDIPTVLAAL--VRQHHITPSLRPVRENLTQCLEALNYANTVAAHVIALSKTPFDYSNDGHLRLLVALWKALKPDVALPAXXXXXXXXXXXXXXXXAPGKAADRASTSRWNELGFQGKDPATDLRGMGLLGLVQLVYYAESYPEKARSTLLESEHPRRWFPWAVAGINVSSFVLALLVDDRALDGRLVEE 279 V LV G EL+RIC + + M + ++ V + +F PFD+ + L + ++Q I+ + NL C N V + +AL +D +ND H LL LW LKPDV + + T W E+GFQG+DP TD R MGLL L QLVYY E YP +AR L+ + HP +W+P+AV GIN++SFV+ +V +R +D RL ++ Sbjct: 46 VDLVLGTCELQRICSEVTKDTRGMMVKVRTNVALDRGLKDVQQD------IFDFKPFDVTSTLLRVGEIKQFAIS---KICESNLRSCFIRFREVNEVYSQALALKDEAYDSTNDQHEALLEQLWTNLKPDV-----------------------RRSGGRYTKEWGEIGFQGQDPMTDFRSMGLLALTQLVYYTEHYPVEARRALVHASHPTQWYPFAVTGINITSFVVD-VVRERLVDSRLYDK 258
BLAST of NO24G01920 vs. NCBI_GenBank
Match: XP_008865755.1 (hypothetical protein H310_03601 [Aphanomyces invadans] >ETW05978.1 hypothetical protein H310_03601 [Aphanomyces invadans]) HSP 1 Score: 131.3 bits (329), Expect = 5.100e-27 Identity = 83/262 (31.68%), Postives = 126/262 (48.09%), Query Frame = 0 Query: 20 WAWSLSLLQSLIVRGVSLVTGKGELERICGGDQRHSSTMSKRFLRSLRFSSSSSHVTSNPASPSLLFRPMPFDIPTVLAAL--VRQHHITPSLRPVRENLTQCLEALNYANTVAAHVIALSKTPFDYSNDGHLRLLVALWKALKPDVALPAXXXXXXXXXXXXXXXXAPGKAADRASTSRWNELGFQGKDPATDLRGMGLLGLVQLVYYAESYPEKARSTLLESEHPRRWFPWAVAGINVSSFVLALLVDDRALDGRLVEER 280 W LS + + I + +V G L+RIC + + + M + ++ SS + +F PFD+ L + ++++ I+ + NL C N V + +AL +D ND H LL LW LKPDV + T W E+GFQG+DP TD R MGLL L QLVYY E YP +AR L+ + HP +W+P+AV GIN++SFV+ ++ +R +D RL +++ Sbjct: 32 WTRILSAVWNFI---LDIVLGTTALQRICSQETKDTRGMMVKVRTNVALDSSLKEAQQD------IFDFKPFDVNETLLRVGEIKKYAIS---KICESNLRTCFIRFRQVNEVYSQALALKDEAYDSKNDEHEALLEQLWSNLKPDV-----------------------RRTGGRYTKEWGEIGFQGQDPMTDFRSMGLLALKQLVYYTEHYPVEARRALVHASHPTQWYPFAVTGINITSFVVDVM-RERLVDSRLYDKQ 257
BLAST of NO24G01920 vs. NCBI_GenBank
Match: EWM24403.1 (elmo domain-containing protein 1, partial [Nannochloropsis gaditana]) HSP 1 Score: 130.2 bits (326), Expect = 1.100e-26 Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0 Query: 198 WNELGFQGKDPATDLRGMGLLGLVQLVYYAESYPEKARSTLLESEHPRRWFPWAVAGINVSSFVLALLVDDRALDGRLVE 278 W+E+GFQG+DPATD RGMG+ GL+Q+V +AES PEKARS LLESEHPRRWFPWAV G+NVS FV LL +D L+ RLVE Sbjct: 22 WSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVE 101
BLAST of NO24G01920 vs. NCBI_GenBank
Match: OQS04492.1 (hypothetical protein THRCLA_03281 [Thraustotheca clavata]) HSP 1 Score: 128.3 bits (321), Expect = 4.300e-26 Identity = 84/264 (31.82%), Postives = 123/264 (46.59%), Query Frame = 0 Query: 19 WWAWSLSLLQ---SLIVRGVSLVTGKGELERICGGDQRHSSTMSKRFLRSLRFSSSSSHVTSNPASPSLLFRPMPFDIPTVLAALVRQHHITPSLRPVRE-NLTQCLEALNYANTVAAHVIALSKTPFDYSNDGHLRLLVALWKALKPDVALPAXXXXXXXXXXXXXXXXAPGKAADRASTSRWNELGFQGKDPATDLRGMGLLGLVQLVYYAESYPEKARSTLLESEHPRRWFPWAVAGINVSSFVLALLVDDRALDGRLVEE 279 W W ++ +V L G+ EL RIC +M RF S+ S + +F F+ VL ++V+Q I S + E N+ QCL+ N V A V L +D N+ H +L LW+ LKP V + T W E+GFQG+DP TD R MG+L L QL Y+ ++Y E+A+ L+ S HP W+P+AV GIN+++F+ A L+ DR LD R+ ++ Sbjct: 18 WTRWIRAITNFFCMCVVYASQLFWGQCELYRICAQPTNDLRSMMVRFRTSVALDSELKE------TKEAIFGFETFETDQVLDSIVQQKRIDFSSNKIAESNMRQCLKKFKAVNGVYAKVFKLRDESYDSKNEKHEEMLEELWENLKPGV-----------------------RRTGGRYTKEWGEIGFQGEDPMTDFRSMGILSLHQLNYFTKNYGEEAKRALVHSCHPTSWYPFAVTGINITNFI-AELIKDRLLDSRMYDK 251
BLAST of NO24G01920 vs. NCBI_GenBank
Match: ETK72601.1 (hypothetical protein L915_20307 [Phytophthora parasitica] >ETL26052.1 hypothetical protein L916_20174 [Phytophthora parasitica] >ETP02090.1 hypothetical protein F441_20755 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 122.9 bits (307), Expect = 1.800e-24 Identity = 81/246 (32.93%), Postives = 120/246 (48.78%), Query Frame = 0 Query: 40 GKGELERICGGDQRHSSTMSKRFLRSLRFSSSSSHVTSNPASPSLLFRPMPFDIPTVLAALVRQHHITPSLRPVRENLTQCLEALNYANTVAAHVIALSKTPFDYSNDGHLRLLVALWKALKPDVALPAXXXXXXXXXXXXXXXXAPGKAADRASTSRWNELGFQGKDPATDLRGMGLLGLVQLVYYAESYPEKARSTLLESEHPRRWFPWAVAGINVSSFVLALLVDDRALDGRLVEEREEGKGG 286 G+ E +R+C +T+ + R +RF + + T + +++F PF + L + + + + N+ CL+ N+ N V A V AL + S H +L LW LKPDV + T W E+GFQG DP +D R MGLL LVQL ++ +SY +A+ L ES HP RW+P+AV GINV++FV+ L+D+R LD +L R G GG Sbjct: 35 GQNEWQRLCSPT---GATVDEE-ERIVRFRTELALSTQMVQTCNVVFDNEPFPMEATLHDVATRAKLDERDVTLMTNVRSCLQRCNFVNKVYARVYALKNEAYSSSKPDHEEMLEQLWTNLKPDV-----------------------RREGGRITKEWGEIGFQGTDPMSDFRSMGLLSLVQLNHFTKSYRIEAQRALEESNHPTRWYPFAVTGINVTAFVIE-LIDERLLDIKLY--RHAGAGG 250
BLAST of NO24G01920 vs. NCBI_GenBank
Match: XP_008914464.1 (hypothetical protein PPTG_18253 [Phytophthora parasitica INRA-310] >ETI32227.1 hypothetical protein F443_20895 [Phytophthora parasitica P1569] >ETL79271.1 hypothetical protein L917_20045 [Phytophthora parasitica] >ETM32523.1 hypothetical protein L914_20071 [Phytophthora parasitica] >ETN00258.1 hypothetical protein PPTG_18253 [Phytophthora parasitica INRA-310] >ETO60958.1 hypothetical protein F444_20913 [Phytophthora parasitica P1976] >ETP30251.1 hypothetical protein F442_20690 [Phytophthora parasitica P10297]) HSP 1 Score: 122.5 bits (306), Expect = 2.400e-24 Identity = 80/246 (32.52%), Postives = 120/246 (48.78%), Query Frame = 0 Query: 40 GKGELERICGGDQRHSSTMSKRFLRSLRFSSSSSHVTSNPASPSLLFRPMPFDIPTVLAALVRQHHITPSLRPVRENLTQCLEALNYANTVAAHVIALSKTPFDYSNDGHLRLLVALWKALKPDVALPAXXXXXXXXXXXXXXXXAPGKAADRASTSRWNELGFQGKDPATDLRGMGLLGLVQLVYYAESYPEKARSTLLESEHPRRWFPWAVAGINVSSFVLALLVDDRALDGRLVEEREEGKGG 286 G+ E +R+C +T+ + R +RF + + T + +++F PF + L + + + + N+ CL+ N+ N V A V AL + S H +L LW LKPD+ + T W E+GFQG DP +D R MGLL LVQL ++ +SY +A+ L ES HP RW+P+AV GINV++FV+ L+D+R LD +L R G GG Sbjct: 35 GQNEWQRLCSPT---GATVDEE-ERIVRFRTELALSTQMVQTCNVVFDNEPFPMEATLHDVATRAKLDERDVTLMTNVRSCLQRCNFVNKVYARVYALKNEAYSSSKPDHEEMLEQLWTNLKPDI-----------------------RREGGRITKEWGEIGFQGTDPMSDFRSMGLLSLVQLNHFTKSYRIEAQRALEESNHPTRWYPFAVTGINVTAFVIE-LIDERLLDIKLY--RHAGAGG 250
BLAST of NO24G01920 vs. NCBI_GenBank
Match: XP_024574997.1 (hypothetical protein F443_20886 [Plasmopara halstedii] >CEG38628.1 hypothetical protein F443_20886 [Plasmopara halstedii]) HSP 1 Score: 122.5 bits (306), Expect = 2.400e-24 Identity = 79/260 (30.38%), Postives = 121/260 (46.54%), Query Frame = 0 Query: 13 EMLVEEWWAWSLSLLQSLIVRGVSLVTGKGELERICGGDQRHSSTMSKRFLRSLRFSSSSSHVTSNPASPSLLFRPMPFDIPTVLAALVRQHHITPSLRPVRENLTQCLEALNYANTVAAHVIALSKTPFDYSNDGHLRLLVALWKALKPDVALPAXXXXXXXXXXXXXXXXAPGKAADRASTSRWNELGFQGKDPATDLRGMGLLGLVQLVYYAESYPEKARSTLLESEHPRRWFPWAVAGINVSSFVLALLVDDRALD 273 E +V W W + +R L G+ E +R+C + + R +RF + + + + +F PF + L + + + S + N+ CL+ N+ N + V AL + SN H LL LW LKPDV + T W E+GFQG DP +D RGMG+L LVQL ++ ++Y +++ L ES HP RW+P+AV GINV++FV+ L+D+R LD Sbjct: 15 ESVVVRIWRW-------VKIRFWHLFYGENEWQRLC----NPTGPDVDEYERVVRFRTELALSKRMVQTCNAVFDNEPFPVEKTLHDVATRASLDKSDTTLMANVRSCLQRCNFVNRIYDQVYALKNEAYSSSNSEHEELLEQLWSNLKPDV-----------------------RRLGGRITKEWGEIGFQGTDPMSDFRGMGILSLVQLNHFTKTYKIESQRALEESNHPTRWYPFAVTGINVTAFVVE-LIDNRLLD 239 The following BLAST results are available for this feature:
BLAST of NO24G01920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G01920 ID=NO24G01920|Name=NO24G01920|organism=Nannochloropsis oceanica|type=gene|length=2252bpback to top protein sequence of NO24G01920.1 >NO24G01920.1-protein ID=NO24G01920.1-protein|Name=NO24G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bpback to top Synonyms
Publications
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