NO24G01920.1, NO24G01920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01920.1
Unique NameNO24G01920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1935
Alignment locationchr24:507242..509493 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:507242..509493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01920.1 vs.
Match: XP_008611963.1 (hypothetical protein, variant [Saprolegnia diclina VS20]; EQC34557.1 hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 137.5 bits (345), Expect = 7.100e-29
Identity = 87/240 (36.25%), Postives = 116/240 (48.33%), Query Frame = 0 
Query:   40 GKGELERICGGDQRHSSTMSKRFLRSLRFSSSSSHVTSNPASPSLLFRPMPFDIPTVLAALVRQHHITPSLRPVRE-NLTQCLEALNYANTVAAHVIALSKTPFDYSNDGHLRLLVALWKALKPDVALPALPAKAAAAGAAATTMTAPGKAADRASTSRWNELGFQGKDPATDLRGMGLLGLVQLVYYAESYPEKARSTLLESEHPRRWFPWAVAGINVSSFVLALLVDDRALDGRLVEE 279
            G+ ELERI         +M  R   S+    S         +   +F   PF+    LAAL R   I  S   + E NL Q  +     N V A VIAL    +D +ND H  +L  LW+ LKPDV                       +      T  W E+GFQG DP TD R MG+L L QL+YY   YPE+ARS L+ S HP +W+P+A+ GIN+++F L  L++DR LD R  ++
Sbjct:   35 GQTELERIVAKPADDVRSMLVRLRTSIALDDSLKD------TQMAIFGFKPFETDVTLAALARTKKIDLSKSLIAEANLRQSFKTFLAVNNVYAKVIALKDESYDSTNDAHEAMLEELWRNLKPDV-----------------------RRTGGRHTKEWGEIGFQGTDPMTDFRSMGVLSLHQLLYYTSKYPEEARSALVHSNHPTQWYPFAITGINITNF-LVELINDRLLDARFYDK 244
The following BLAST results are available for this feature:
BLAST of NO24G01920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008611963.17.100e-2936.25hypothetical protein, variant [Saprolegnia diclina... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01920NO24G01920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01920.1NO24G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01920.1.cds1NO24G01920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01920.1.cds2NO24G01920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01920.1.cds3NO24G01920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01920.1 ID=NO24G01920.1|Name=NO24G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp
TTCTCGCTGGATCTGGACCGTGGCCTGTGAATGATGGAGGATGAGGTGAA
GGAGAGCGCGGGAAGGGGGAAGAGGAGAATCAGATTGAGAGGCAACGAGA
CCGTAGGGATGGGGATGGCGAGTTACAGAAAAAGTTTGGATTGTAACTAG
AGGAAAAACAGAAAGAGGGATGCATCGAGGGCAGAAGACATGCTGTGCAG
CTCCATCACGAGACGTACAGTATGTTGTAGGCGCTCTGCTGGTGTCCGTT
CAGGCTTTTGCCGCTTCTTGAGGACGGCCATGATTTTGTTGCTACTTTTG
CTCCTGCTCCTTCTGTTCTGACACCTTCTATTGCTCCTACTACTCCGATT
GAGTGGCACTGGGTGCTACTACCGACACGCTTATTCTGGTTGTGGGTCAA
AAATGGACAGATATCCGAGATGAAATGACCTCCCCACCCCCTTCAGCTTG
CCAATCCCGGCCCCTCCTTACAAGGTTTGTTCTCCCCGTCCCTCCACGTC
CAGCCAATGGATATAGGCCCGAGTCCTGGTCCTCGCTAGTTGCTTGGCTT
GTATGGTGTGCGTGTGGATATGCGTACGCGTGAGAAGGGAGAATGATTAT
GGCCACTCCAGCCAAGCCAAAAACTCGCCGCCTCGCTCACAAACGGCATT
CGTTGCCAGCATTTGTCTCACTATCACCACACCATATTTATAATTTTGTT
CGAAGTCATGGGTGCCGTCTTGTCCTTCCTCCCGGAGCCCCTTGAAATGT
TGGTGGAAGAATGGTGGGCGTGGTCCTTGAGTCTTTTGCAGTCTCTGATT
GTGCGAGGCGTAAGCTTGGTCACAGGCAAAGGCGAGCTCGAGCGAATCTG
CGGCGGAGACCAACGGCACTCTTCCACCATGAGCAAACGATTCCTGCGTT
CCCTCCGTTTCTCCTCCTCTTCCTCACACGTCACGTCCAACCCTGCCTCT
CCCTCCCTGCTTTTTCGTCCCATGCCTTTCGACATCCCCACGGTGCTTGC
CGCGCTGGTCAGACAGCATCACATAACACCGTCCCTGCGCCCTGTCCGTG
AAAACTTGACCCAGTGCCTGGAGGCCCTTAACTACGCCAACACAGTAGCT
GCTCACGTCATCGCCTTGTCTAAAACCCCTTTTGATTACTCAAATGACGG
GCATCTCCGCCTTTTGGTGGCACTCTGGAAAGCTCTTAAGCCGGATGTGG
CGCTTCCTGCATTACCAGCAAAAGCAGCAGCAGCAGGAGCAGCAGCCACA
ACAATGACTGCGCCAGGAAAGGCAGCTGACCGTGCCTCTACCTCACGATG
GAACGAACTCGGATTTCAGGGCAAGGACCCTGCGACCGATCTGCGAGGAA
TGGGATTGCTAGGCCTCGTGCAACTCGTTTACTACGCCGAGTCCTACCCA
GAGAAGGCTCGGTCCACACTGCTGGAAAGCGAGCATCCCCGACGCTGGTT
CCCGTGGGCGGTGGCCGGTATTAATGTAAGTAGTTTTGTCTTGGCGTTGT
TGGTGGATGACAGGGCGTTGGACGGGAGGTTGGTCGAGGAGAGGGAGGAG
GGGAAGGGGGGAAAGGGGGTGAGGGAGGGAGGGATAGGCAAGGAGGGGTC
GGTGGAGGAGAGAGGGAGGAAGGGAGGGAAGGGGGAGGGATGAAGGTCGT
GAATGAGGTATATTGCCGGGTGTGGGAGGAGATGGGAAGGGCTTGGGTGG
AGGCGGATGCGGAGAACGTGATGGCCTTCCCAAGGGTGTGGGGGGAGGTG
AAGAGGAGGGAGAGGAAAAAGTGGAGGATGAGGGGGGAGGACCTGCTGGG
GGATTTGATGCAGTGGTGAAGGAAAGGAGGGAATTTAAGAAGGAGGGATG
GGAGGGAAGGAAGGAGGAAGAGAAGAGGATGAAGGAGATGATGAAGATGA
AGAAGAAGAAGAAGAATGATGATATGGCGACATAA
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protein sequence of NO24G01920.1

>NO24G01920.1-protein ID=NO24G01920.1-protein|Name=NO24G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MGAVLSFLPEPLEMLVEEWWAWSLSLLQSLIVRGVSLVTGKGELERICGG
DQRHSSTMSKRFLRSLRFSSSSSHVTSNPASPSLLFRPMPFDIPTVLAAL
VRQHHITPSLRPVRENLTQCLEALNYANTVAAHVIALSKTPFDYSNDGHL
RLLVALWKALKPDVALPALPAKAAAAGAAATTMTAPGKAADRASTSRWNE
LGFQGKDPATDLRGMGLLGLVQLVYYAESYPEKARSTLLESEHPRRWFPW
AVAGINVSSFVLALLVDDRALDGRLVEEREEGKGGKGVREGGIGKEGSVE
ERGRKGGKGEG*
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mRNA from alignment at chr24:507242..509493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01920.1 ID=NO24G01920.1|Name=NO24G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2252bp|location=Sequence derived from alignment at chr24:507242..509493- (Nannochloropsis oceanica)
TTCTCGCTGGATCTGGACCGTGGCCTGTGAATGATGGAGGATGAGGTGAA
GGAGAGCGCGGGAAGGGGGAAGAGGAGAATCAGATTGAGAGGCAACGAGA
CCGTAGGGATGGGGATGGCGAGTTACAGAAAAAGTTTGGATTGTAACTAG
AGGAAAAACAGAAAGAGGGATGCATCGAGGGCAGAAGACATGCTGTGCAG
CTCCATCACGAGACGTACAGTATGTTGTAGGCGCTCTGCTGGTGTCCGTT
CAGGCTTTTGCCGCTTCTTGAGGACGGCCATGATTTTGTTGCTACTTTTG
CTCCTGCTCCTTCTGTTCTGACACCTTCTATTGCTCCTACTACTCCGATT
GAGTGGCACTGGGTGCTACTACCGACACGCTTATTCTGGTTGTGGGTCAA
AAATGGACAGATATCCGAGATGAAATGACCTCCCCACCCCCTTCAGCTTG
CCAATCCCGGCCCCTCCTTACAAGGTTTGTTCTCCCCGTCCCTCCACGTC
CAGCCAATGGATATAGGCCCGAGTCCTGGTCCTCGCTAGTTGCTTGGCTT
GTATGGTGTGCGTGTGGATATGCGTACGCGTGAGAAGGGAGAATGATTAT
GGCCACTCCAGCCAAGCCAAAAACTCGCCGCCTCGCTCACAAACGGCATT
CGTTGCCAGCATTTGTCTCACTATCACCACACCATATTTATAATTTTGTT
CGAAGTCATGGGTGCCGTCTTGTCCTTCCTCCCGGAGCCCCTTGAAATGT
TGGTGGAAGAATGGTGGGCGTGGTCCTTGAGTCTTTTGCAGTCTCTGATT
GTGCGAGGCGTAAGCTTGGTCACAGGTAAGAGGCAAGTCGAGGCAGCAAG
AGGGTTGGGGAGGAAGGCATGGAATAAGGGAGGAAGAGGTGTACGTGCTC
CTCCATGTACACGTCCAGTCGTGCGGAGTATGGGTACTCCCCCTCTTTAT
CTACCCTTCCAAGGCTCACCTACCCCACCCTAACCACAGGCAAAGGCGAG
CTCGAGCGAATCTGCGGCGGAGACCAACGGCACTCTTCCACCATGAGCAA
ACGATTCCTGCGTTCCCTCCGTTTCTCCTCCTCTTCCTCACACGTCACGT
CCAACCCTGCCTCTCCCTCCCTGCTTTTTCGTCCCATGCCTTTCGACATC
CCCACGGTGCTTGCCGCGCTGGTCAGACAGCATCACATAACACCGTCCCT
GCGCCCTGTCCGTGAAAACTTGACCCAGGTACGTGCTACATATCATTTCT
ACAGCCAGTCATCGTCATCTCTGCTGCTGCTACTTCGTCTGCTAGGTCCT
GGTATGCATGCATGCCTCCTTCCACATTCATCCACCTCTGTCCCCTTTTC
CTTCATCTCCTCTCTCCCTTCCTCCCTCTAGTGCCTGGAGGCCCTTAACT
ACGCCAACACAGTAGCTGCTCACGTCATCGCCTTGTCTAAAACCCCTTTT
GATTACTCAAATGACGGGCATCTCCGCCTTTTGGTGGCACTCTGGAAAGC
TCTTAAGCCGGATGTGGCGCTTCCTGCATTACCAGCAAAAGCAGCAGCAG
CAGGAGCAGCAGCCACAACAATGACTGCGCCAGGAAAGGCAGCTGACCGT
GCCTCTACCTCACGATGGAACGAACTCGGATTTCAGGGCAAGGACCCTGC
GACCGATCTGCGAGGAATGGGATTGCTAGGCCTCGTGCAACTCGTTTACT
ACGCCGAGTCCTACCCAGAGAAGGCTCGGTCCACACTGCTGGAAAGCGAG
CATCCCCGACGCTGGTTCCCGTGGGCGGTGGCCGGTATTAATGTAAGTAG
TTTTGTCTTGGCGTTGTTGGTGGATGACAGGGCGTTGGACGGGAGGTTGG
TCGAGGAGAGGGAGGAGGGGAAGGGGGGAAAGGGGGTGAGGGAGGGAGGG
ATAGGCAAGGAGGGGTCGGTGGAGGAGAGAGGGAGGAAGGGAGGGAAGGG
GGAGGGATGAAGGTCGTGAATGAGGTATATTGCCGGGTGTGGGAGGAGAT
GGGAAGGGCTTGGGTGGAGGCGGATGCGGAGAACGTGATGGCCTTCCCAA
GGGTGTGGGGGGAGGTGAAGAGGAGGGAGAGGAAAAAGTGGAGGATGAGG
GGGGAGGACCTGCTGGGGGATTTGATGCAGTGGTGAAGGAAAGGAGGGAA
TTTAAGAAGGAGGGATGGGAGGGAAGGAAGGAGGAAGAGAAGAGGATGAA
GGAGATGATGAAGATGAAGAAGAAGAAGAAGAATGATGATATGGCGACAT
AA
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Coding sequence (CDS) from alignment at chr24:507242..509493-

>NO24G01920.1 ID=NO24G01920.1|Name=NO24G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr24:507242..509493- (Nannochloropsis oceanica)
ATGGGTGCCGTCTTGTCCTTCCTCCCGGAGCCCCTTGAAATGTTGGTGGA
AGAATGGTGGGCGTGGTCCTTGAGTCTTTTGCAGTCTCTGATTGTGCGAG
GCGTAAGCTTGGTCACAGGCAAAGGCGAGCTCGAGCGAATCTGCGGCGGA
GACCAACGGCACTCTTCCACCATGAGCAAACGATTCCTGCGTTCCCTCCG
TTTCTCCTCCTCTTCCTCACACGTCACGTCCAACCCTGCCTCTCCCTCCC
TGCTTTTTCGTCCCATGCCTTTCGACATCCCCACGGTGCTTGCCGCGCTG
GTCAGACAGCATCACATAACACCGTCCCTGCGCCCTGTCCGTGAAAACTT
GACCCAGTGCCTGGAGGCCCTTAACTACGCCAACACAGTAGCTGCTCACG
TCATCGCCTTGTCTAAAACCCCTTTTGATTACTCAAATGACGGGCATCTC
CGCCTTTTGGTGGCACTCTGGAAAGCTCTTAAGCCGGATGTGGCGCTTCC
TGCATTACCAGCAAAAGCAGCAGCAGCAGGAGCAGCAGCCACAACAATGA
CTGCGCCAGGAAAGGCAGCTGACCGTGCCTCTACCTCACGATGGAACGAA
CTCGGATTTCAGGGCAAGGACCCTGCGACCGATCTGCGAGGAATGGGATT
GCTAGGCCTCGTGCAACTCGTTTACTACGCCGAGTCCTACCCAGAGAAGG
CTCGGTCCACACTGCTGGAAAGCGAGCATCCCCGACGCTGGTTCCCGTGG
GCGGTGGCCGGTATTAATGTAAGTAGTTTTGTCTTGGCGTTGTTGGTGGA
TGACAGGGCGTTGGACGGGAGGTTGGTCGAGGAGAGGGAGGAGGGGAAGG
GGGGAAAGGGGGTGAGGGAGGGAGGGATAGGCAAGGAGGGGTCGGTGGAG
GAGAGAGGGAGGAAGGGAGGGAAGGGGGAGGGATGA
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Synonyms
Publications