NO24G01890, NO24G01890 (gene) Nannochloropsis oceanica

Overview
NameNO24G01890
Unique NameNO24G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length960
Alignment locationchr24:501846..502805 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:501846..502805 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
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BLAST of NO24G01890 vs. NCBI_GenBank
Match: EWM24398.1 (hypothetical protein Naga_100911g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 87.8 bits (216), Expect = 5.000e-14
Identity = 56/164 (34.15%), Postives = 68/164 (41.46%), Query Frame = 0 
Query:  115 DPDFVVFGENCMLKFRLTTYXXXXXXXXXXXXXXG---------------------------------------------------------RGRGGM-----------PMPPREIKIIPTSTGDWIFHFSMEAEEMFEVTVTRGRKAILKRLIQMSLPAIFGW 211
            DPDF VFG +C+LKFRLT Y              G                                                         R RGG            P+P RE+K+IPT+TG W   FS+E E++F+VTV+RGRKA+LK LI  SLPAIFGW
Sbjct:  117 DPDFTVFGNDCILKFRLTNYQFPASTAIPGGGGEGGAGPSRVKPINSRLLVEFTRRKSSGTYDWKGTKRLSLTAEEIGLLLDCGPSEELIFRRTRGGEGIGGGTIESAGPVPQREMKVIPTTTGGWAVRFSIENEDLFDVTVSRGRKAVLKSLIHTSLPAIFGW 280
The following BLAST results are available for this feature:
BLAST of NO24G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24398.15.000e-1434.15hypothetical protein Naga_100911g3, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002799NSK002799Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01890.1NO24G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652348gene_7414Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100911g3gene6081Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01890.1NO24G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01890 ID=NO24G01890|Name=NO24G01890|organism=Nannochloropsis oceanica|type=gene|length=960bp
ATGCTTCTTCTCCGTAGCGGCACCAGGAGCAGCAGCAGCGCCCAGACTGT
AAATTCTCGATTCTTCCGGCTTCCTGCAGCCCAGCAGCAGCAGCAGCAGC
AGCAACAGCAACGAAACATAGTACTGATGCAACGGAAGCCCTGTACGAGT
ACCCACAAGAACAGCAGCGCCACCTGCTTCCTTTCCTCCCTCCCTTGTAC
CTATTCCTCTACTCTACGCGGTATCTCCTTTTCCTCCTCCTCCTCCTTCC
CCTCCTCCTCTTCCTCCCCCTCCTCCGTAACCTTTTCCACATCATCCTTC
TCCGATATGGGCAATAATGCCTTCCCTACCAATCAGAGGAGTGACCCTGA
CTTCGTCGTCTTTGGCGAGAACTGCATGCTCAAGTTTCGCCTGACCACCT
ACCAACAACCCGGGGGGGGTGGGCGGTGGTGGTGgtggctctccacctgg
aggaggaggcggaggaggaggcggaggaggaggcggaggaggaggcactc
ttaactacaagaacaatgcgcggttgctcgtagaatttacgaagaagggc
ccaagtggtgcgtatgaatggaaggggacaaaaaggctctccctgacggc
agaggagatcgggcttatgcttgacagtggcccgacagaagagctcatat
tccgtcgttcagGGGGCGGAGGGGGAGGGGGAGGGGAGGGATGCCGATGC
CACCGAGGGAGATAAAGATCATCCCCACATCGACGGGGGATTGGATCTTC
CATTTCTCGATGGAGGCGGAGGAGATGTTCGAGGTGACTGTGACGAGGGG
AAGGAAGGCGATTTTGAAACGATTAATACAGATGAGCCTGCCTGCTATTT
TTGGTTGGGGAGGAGGAGGAGGAGGAGGGGGAGCGGGAGGAGGAACAGCA
GCAGCGCCTCTAGGAGGAGGATTAGGAGGAGGAGGAGGGATGGGTAGGGG
GGAGGGATAG
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protein sequence of NO24G01890.1

>NO24G01890.1-protein ID=NO24G01890.1-protein|Name=NO24G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MLLLRSGTRSSSSAQTVNSRFFRLPAAQQQQQQQQQQRNIVLMQRKPCTS
THKNSSATCFLSSLPCTYSSTLRGISFSSSSSFPSSSSSPSSVTFSTSSF
SDMGNNAFPTNQRSDPDFVVFGENCMLKFRLTTYQQPGGGGRWWWGRRGR
GRGGMPMPPREIKIIPTSTGDWIFHFSMEAEEMFEVTVTRGRKAILKRLI
QMSLPAIFGWGGGGGGGGAGGGTAAAPLGGGLGGGGGMGRGEG*
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Synonyms
Publications