NO24G01890.1, NO24G01890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01890.1
Unique NameNO24G01890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length732
Alignment locationchr24:501846..502805 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:501846..502805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01890.1 vs.
Match: EWM24398.1 (hypothetical protein Naga_100911g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 84.7 bits (208), Expect = 4.300e-13
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 0 
Query:  147 RRGRGRGGM------PMPPREIKIIPTSTGDWIFHFSMEAEEMFEVTVTRGRKAILKRLIQMSLPAIFGWGGGGGGGGAGGG 223
            R G G GG       P+P RE+K+IPT+TG W   FS+E E++F+VTV+RGRKA+LK LI  SLPAIFGWGGG  G G   G
Sbjct:  211 RGGEGIGGGTIESAGPVPQREMKVIPTTTGGWAVRFSIENEDLFDVTVSRGRKAVLKSLIHTSLPAIFGWGGGSRGEGGRRG 292
The following BLAST results are available for this feature:
BLAST of NO24G01890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24398.14.300e-1357.32hypothetical protein Naga_100911g3, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01890NO24G01890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01890.1NO24G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01890.1.cds1NO24G01890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01890.1.cds2NO24G01890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01890.1 ID=NO24G01890.1|Name=NO24G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=732bp
ATGCTTCTTCTCCGTAGCGGCACCAGGAGCAGCAGCAGCGCCCAGACTGT
AAATTCTCGATTCTTCCGGCTTCCTGCAGCCCAGCAGCAGCAGCAGCAGC
AGCAACAGCAACGAAACATAGTACTGATGCAACGGAAGCCCTGTACGAGT
ACCCACAAGAACAGCAGCGCCACCTGCTTCCTTTCCTCCCTCCCTTGTAC
CTATTCCTCTACTCTACGCGGTATCTCCTTTTCCTCCTCCTCCTCCTTCC
CCTCCTCCTCTTCCTCCCCCTCCTCCGTAACCTTTTCCACATCATCCTTC
TCCGATATGGGCAATAATGCCTTCCCTACCAATCAGAGGAGTGACCCTGA
CTTCGTCGTCTTTGGCGAGAACTGCATGCTCAAGTTTCGCCTGACCACCT
ACCAACAACCCGGGGGGGGTGGGCGGTGGTGGTGGGGGCGGAGGGGGAGG
GGGAGGGGAGGGATGCCGATGCCACCGAGGGAGATAAAGATCATCCCCAC
ATCGACGGGGGATTGGATCTTCCATTTCTCGATGGAGGCGGAGGAGATGT
TCGAGGTGACTGTGACGAGGGGAAGGAAGGCGATTTTGAAACGATTAATA
CAGATGAGCCTGCCTGCTATTTTTGGTTGGGGAGGAGGAGGAGGAGGAGG
GGGAGCGGGAGGAGGAACAGCAGCAGCGCCTCTAGGAGGAGGATTAGGAG
GAGGAGGAGGGATGGGTAGGGGGGAGGGATAG
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protein sequence of NO24G01890.1

>NO24G01890.1-protein ID=NO24G01890.1-protein|Name=NO24G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MLLLRSGTRSSSSAQTVNSRFFRLPAAQQQQQQQQQQRNIVLMQRKPCTS
THKNSSATCFLSSLPCTYSSTLRGISFSSSSSFPSSSSSPSSVTFSTSSF
SDMGNNAFPTNQRSDPDFVVFGENCMLKFRLTTYQQPGGGGRWWWGRRGR
GRGGMPMPPREIKIIPTSTGDWIFHFSMEAEEMFEVTVTRGRKAILKRLI
QMSLPAIFGWGGGGGGGGAGGGTAAAPLGGGLGGGGGMGRGEG*
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mRNA from alignment at chr24:501846..502805+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01890.1 ID=NO24G01890.1|Name=NO24G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=960bp|location=Sequence derived from alignment at chr24:501846..502805+ (Nannochloropsis oceanica)
ATGCTTCTTCTCCGTAGCGGCACCAGGAGCAGCAGCAGCGCCCAGACTGT
AAATTCTCGATTCTTCCGGCTTCCTGCAGCCCAGCAGCAGCAGCAGCAGC
AGCAACAGCAACGAAACATAGTACTGATGCAACGGAAGCCCTGTACGAGT
ACCCACAAGAACAGCAGCGCCACCTGCTTCCTTTCCTCCCTCCCTTGTAC
CTATTCCTCTACTCTACGCGGTATCTCCTTTTCCTCCTCCTCCTCCTTCC
CCTCCTCCTCTTCCTCCCCCTCCTCCGTAACCTTTTCCACATCATCCTTC
TCCGATATGGGCAATAATGCCTTCCCTACCAATCAGAGGAGTGACCCTGA
CTTCGTCGTCTTTGGCGAGAACTGCATGCTCAAGTTTCGCCTGACCACCT
ACCAACAACCCGGGGGGGGTGGGCGGTGGTGGTGGTGGCTCTCCACCTGG
AGGAGGAGGCGGAGGAGGAGGCGGAGGAGGAGGCGGAGGAGGAGGCACTC
TTAACTACAAGAACAATGCGCGGTTGCTCGTAGAATTTACGAAGAAGGGC
CCAAGTGGTGCGTATGAATGGAAGGGGACAAAAAGGCTCTCCCTGACGGC
AGAGGAGATCGGGCTTATGCTTGACAGTGGCCCGACAGAAGAGCTCATAT
TCCGTCGTTCAGGGGGCGGAGGGGGAGGGGGAGGGGAGGGATGCCGATGC
CACCGAGGGAGATAAAGATCATCCCCACATCGACGGGGGATTGGATCTTC
CATTTCTCGATGGAGGCGGAGGAGATGTTCGAGGTGACTGTGACGAGGGG
AAGGAAGGCGATTTTGAAACGATTAATACAGATGAGCCTGCCTGCTATTT
TTGGTTGGGGAGGAGGAGGAGGAGGAGGGGGAGCGGGAGGAGGAACAGCA
GCAGCGCCTCTAGGAGGAGGATTAGGAGGAGGAGGAGGGATGGGTAGGGG
GGAGGGATAG
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Coding sequence (CDS) from alignment at chr24:501846..502805+

>NO24G01890.1 ID=NO24G01890.1|Name=NO24G01890.1|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at chr24:501846..502805+ (Nannochloropsis oceanica)
ATGCTTCTTCTCCGTAGCGGCACCAGGAGCAGCAGCAGCGCCCAGACTGT
AAATTCTCGATTCTTCCGGCTTCCTGCAGCCCAGCAGCAGCAGCAGCAGC
AGCAACAGCAACGAAACATAGTACTGATGCAACGGAAGCCCTGTACGAGT
ACCCACAAGAACAGCAGCGCCACCTGCTTCCTTTCCTCCCTCCCTTGTAC
CTATTCCTCTACTCTACGCGGTATCTCCTTTTCCTCCTCCTCCTCCTTCC
CCTCCTCCTCTTCCTCCCCCTCCTCCGTAACCTTTTCCACATCATCCTTC
TCCGATATGGGCAATAATGCCTTCCCTACCAATCAGAGGAGTGACCCTGA
CTTCGTCGTCTTTGGCGAGAACTGCATGCTCAAGTTTCGCCTGACCACCT
ACCAACAACCCGGGGGGGGTGGGCGGTGGTGGTGGGGGCGGAGGGGGAGG
GGGAGGGGAGGGATGCCGATGCCACCGAGGGAGATAAAGATCATCCCCAC
ATCGACGGGGGATTGGATCTTCCATTTCTCGATGGAGGCGGAGGAGATGT
TCGAGGTGACTGTGACGAGGGGAAGGAAGGCGATTTTGAAACGATTAATA
CAGATGAGCCTGCCTGCTATTTTTGGTTGGGGAGGAGGAGGAGGAGGAGG
GGGAGCGGGAGGAGGAACAGCAGCAGCGCCTCTAGGAGGAGGATTAGGAG
GAGGAGGAGGGATGGGTAGGGGGGAGGGATAG
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Synonyms
Publications