NO24G01850, NO24G01850 (gene) Nannochloropsis oceanica

Overview
NameNO24G01850
Unique NameNO24G01850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length518
Alignment locationchr24:491806..492323 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:491806..492323 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005651UPF0434/Trm112
Homology
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BLAST of NO24G01850 vs. NCBI_GenBank
Match: XP_005855550.1 (hypothetical protein NGA_0641700 [Nannochloropsis gaditana CCMP526] >EKU20816.1 hypothetical protein NGA_0641700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 72.8 bits (177), Expect = 9.800e-10
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0 
Query:   67 NQELLGLLVCPLTKEPLRHDVAKGTLISEGINVSFPITPLGLPNLLPYEATILD 121
            +  L  +LVCPLTKEPL +D  + +L+SE INVS+  TP GLPNLLP EATIL+
Sbjct:   28 DDSLHAILVCPLTKEPLIYDPVRNSLVSEAINVSYSFTPTGLPNLLPQEATILE 81
The following BLAST results are available for this feature:
BLAST of NO24G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855550.19.800e-1061.11hypothetical protein NGA_0641700 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01850.1NO24G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598664gene_7411Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01850.1NO24G01850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01850 ID=NO24G01850|Name=NO24G01850|organism=Nannochloropsis oceanica|type=gene|length=518bp
ATGACTAGCGCCCCCTCGTCCACGCATCCACATCGACCTCGCACTCTGAC
CCACATCAATCTGTGTGCTCCTGgtaatataaccccgatggacactctcc
tcttctcatcttaacacttttctttcatccacactcacatctcttcctct
gctttatcacagGGATCATCATCATGCCCTCCCTCTCACGGCGCCTCCTC
ATAACCATCCCCCGGCGACTCAACTCCTCCTCCTCCTCTTCCTCCTCCTC
GATTCCACGTCCTGCCATACCATCACCGGCACCACCGAATCAGGAACTTC
TGGGTCTGCTCGTATGTCCGCTCACCAAGGAACCGCTCCGTCATGATGTG
GCCAAGGGCACGCTTATTTCGGAAGGCATCAATGTCTCCTTCCCCATCAC
GCCCTTGGGCCTCCCCAACCTCCTACCCTACGAGGCAACCATCTTGGACG
GGCAGGAAGGGGAGGATGAGGGAGAGGAAGTGAGTAACAGAAAGGCGGGA
GGAGATGAGAAGGTGTGA
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protein sequence of NO24G01850.1

>NO24G01850.1-protein ID=NO24G01850.1-protein|Name=NO24G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MTSAPSSTHPHRPRTLTHINLCAPGIIIMPSLSRRLLITIPRRLNSSSSS
SSSSIPRPAIPSPAPPNQELLGLLVCPLTKEPLRHDVAKGTLISEGINVS
FPITPLGLPNLLPYEATILDGQEGEDEGEEVSNRKAGGDEKV*
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Synonyms
Publications