NO24G01850.1, NO24G01850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01850.1
Unique NameNO24G01850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length429
Alignment locationchr24:491806..492323 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:491806..492323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO24G01850.1 vs.
Match: XP_005855550.1 (hypothetical protein NGA_0641700 [Nannochloropsis gaditana CCMP526]; EKU20816.1 hypothetical protein NGA_0641700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 74.7 bits (182), Expect = 2.600e-10
Identity = 50/118 (42.37%), Postives = 66/118 (55.93%), Query Frame = 0 
Query:   31 SLSRRLLITIPRRLNSSSSSSSSSIPRPAIPSPAPPNQELLGLLVCPLTKEPLRHDVAKGTLISEGINVSFPITPLGLPNLLPYEATILDGQ-----EGEDEG---EEVSNRKAGGDE 141
            SLSR   +++ R L S+            +P   P +  L  +LVCPLTKEPL +D  + +L+SE INVS+  TP GLPNLLP EATIL+ +     + E+ G   EE   RK  G E
Sbjct:    2 SLSRPFAVSLRRTLTSAKH----------VPKRPPLDDSLHAILVCPLTKEPLIYDPVRNSLVSEAINVSYSFTPTGLPNLLPQEATILEQETRARKKIEEIGVREEEQEKRKGEGKE 109
The following BLAST results are available for this feature:
BLAST of NO24G01850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855550.12.600e-1042.37hypothetical protein NGA_0641700 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01850NO24G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01850.1NO24G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01850.1.cds1NO24G01850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01850.1.cds2NO24G01850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01850.1 ID=NO24G01850.1|Name=NO24G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=429bp
ATGACTAGCGCCCCCTCGTCCACGCATCCACATCGACCTCGCACTCTGAC
CCACATCAATCTGTGTGCTCCTGGGATCATCATCATGCCCTCCCTCTCAC
GGCGCCTCCTCATAACCATCCCCCGGCGACTCAACTCCTCCTCCTCCTCT
TCCTCCTCCTCGATTCCACGTCCTGCCATACCATCACCGGCACCACCGAA
TCAGGAACTTCTGGGTCTGCTCGTATGTCCGCTCACCAAGGAACCGCTCC
GTCATGATGTGGCCAAGGGCACGCTTATTTCGGAAGGCATCAATGTCTCC
TTCCCCATCACGCCCTTGGGCCTCCCCAACCTCCTACCCTACGAGGCAAC
CATCTTGGACGGGCAGGAAGGGGAGGATGAGGGAGAGGAAGTGAGTAACA
GAAAGGCGGGAGGAGATGAGAAGGTGTGA
back to top

protein sequence of NO24G01850.1

>NO24G01850.1-protein ID=NO24G01850.1-protein|Name=NO24G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MTSAPSSTHPHRPRTLTHINLCAPGIIIMPSLSRRLLITIPRRLNSSSSS
SSSSIPRPAIPSPAPPNQELLGLLVCPLTKEPLRHDVAKGTLISEGINVS
FPITPLGLPNLLPYEATILDGQEGEDEGEEVSNRKAGGDEKV*
back to top

mRNA from alignment at chr24:491806..492323+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01850.1 ID=NO24G01850.1|Name=NO24G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=518bp|location=Sequence derived from alignment at chr24:491806..492323+ (Nannochloropsis oceanica)
ATGACTAGCGCCCCCTCGTCCACGCATCCACATCGACCTCGCACTCTGAC
CCACATCAATCTGTGTGCTCCTGGTAATATAACCCCGATGGACACTCTCC
TCTTCTCATCTTAACACTTTTCTTTCATCCACACTCACATCTCTTCCTCT
GCTTTATCACAGGGATCATCATCATGCCCTCCCTCTCACGGCGCCTCCTC
ATAACCATCCCCCGGCGACTCAACTCCTCCTCCTCCTCTTCCTCCTCCTC
GATTCCACGTCCTGCCATACCATCACCGGCACCACCGAATCAGGAACTTC
TGGGTCTGCTCGTATGTCCGCTCACCAAGGAACCGCTCCGTCATGATGTG
GCCAAGGGCACGCTTATTTCGGAAGGCATCAATGTCTCCTTCCCCATCAC
GCCCTTGGGCCTCCCCAACCTCCTACCCTACGAGGCAACCATCTTGGACG
GGCAGGAAGGGGAGGATGAGGGAGAGGAAGTGAGTAACAGAAAGGCGGGA
GGAGATGAGAAGGTGTGA
back to top

Coding sequence (CDS) from alignment at chr24:491806..492323+

>NO24G01850.1 ID=NO24G01850.1|Name=NO24G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at chr24:491806..492323+ (Nannochloropsis oceanica)
ATGACTAGCGCCCCCTCGTCCACGCATCCACATCGACCTCGCACTCTGAC
CCACATCAATCTGTGTGCTCCTGGGATCATCATCATGCCCTCCCTCTCAC
GGCGCCTCCTCATAACCATCCCCCGGCGACTCAACTCCTCCTCCTCCTCT
TCCTCCTCCTCGATTCCACGTCCTGCCATACCATCACCGGCACCACCGAA
TCAGGAACTTCTGGGTCTGCTCGTATGTCCGCTCACCAAGGAACCGCTCC
GTCATGATGTGGCCAAGGGCACGCTTATTTCGGAAGGCATCAATGTCTCC
TTCCCCATCACGCCCTTGGGCCTCCCCAACCTCCTACCCTACGAGGCAAC
CATCTTGGACGGGCAGGAAGGGGAGGATGAGGGAGAGGAAGTGAGTAACA
GAAAGGCGGGAGGAGATGAGAAGGTGTGA
back to top
Synonyms
Publications