NO24G01840, NO24G01840 (gene) Nannochloropsis oceanica

Overview
NameNO24G01840
Unique NameNO24G01840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3075
Alignment locationchr24:488016..491090 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:488016..491090 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR001810F-box_dom
Homology
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BLAST of NO24G01840 vs. NCBI_GenBank
Match: EWM24393.1 (hypothetical protein Naga_100283g6 [Nannochloropsis gaditana])

HSP 1 Score: 292.4 bits (747), Expect = 3.100e-75
Identity = 164/283 (57.95%), Postives = 183/283 (64.66%), Query Frame = 0 
Query:  301 MSRAGIGRRMSGGTGSGRASGREGGVGWGSQYTLSVEIFDRKGGFRLFCSYGQMSVMQQGVGNEGRWLTKLAVTGFASCWHFSAATRDPVYGRFPTIKEYFERAHEPGLDHCLCTEVTVMHKDTGKMAVLYASSKESQRRLTANKNGTSYFEEDLRPATTSSSFPMA---------GVDAPTPSSLPPSHAISYMAASGMAISKV-----------LPSSLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRVDRLYLIFSTLRRWDVPKIFEGLEW 564
            M RAGIGRRM          G E        YTLSVEIFDRKGGFRLFCSYG++S+M QGVG EGRW+TKLAVTGFASCWHFSAA+RD V+GRF TIK+YFERAHEPGL+HCLCTEVT MHK TG+MAVLYASSKES+RRL   KNGTSYFEE+LRPA  SS+  MA         G+     S   PS  I Y+AASG+A+SKV           LP+ +P                                  YRVDRLYLIFST RRWD+PKIFEGLEW
Sbjct:    1 MRRAGIGRRMXXXXXXXXXXGEE--------YTLSVEIFDRKGGFRLFCSYGRVSIMHQGVGVEGRWMTKLAVTGFASCWHFSAASRDSVHGRFETIKDYFERAHEPGLEHCLCTEVTAMHKKTGRMAVLYASSKESRRRLAGEKNGTSYFEEELRPAFASSAGVMASTASGSSHPGLPPSLSSFCAPSPGIPYLAASGIAVSKVSTPPSTSSLSPLPAGIP-------------------------SMDEEKEQKYRVDRLYLIFSTERRWDLPKIFEGLEW 250
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BLAST of NO24G01840 vs. NCBI_GenBank
Match: EWM22694.1 (hypothetical protein Naga_100340g3 [Nannochloropsis gaditana])

HSP 1 Score: 86.7 bits (213), Expect = 2.600e-13
Identity = 77/250 (30.80%), Postives = 118/250 (47.20%), Query Frame = 0 
Query:  196 LSSLPSSLLLH-IFDF-VWSGRPSYTDGTDGRRQLGTLSLVSKQWRDLAGSDQLWKPLCIARWPWLKSLKGGPVELLPSLKMEDGEEEGGREGGGEWREFCLRNGRCM--SRAGIGRRMSGGTGSGRASGREGGVGWGSQYTLSVEIFDRKGGFRLFCSYGQMSVM--QQGVGNEGRW--LTKLAVTGFASCWHFSAATRDPVYGRFPTIKEYFERAHEPGLDHCLCTEVTVMHKDTGKMAVLYASSKES 438
            LS+L S  LLH IF F +   RP      + R  L TLSLV++++  LA  ++ W+P+     P L   +              G  EGG   G ++R + L+ G C+   RA +G  +  G                  ++LS E++D   G R+  + G + V   QQG     R     +  V G A    FSAA+RDP+  RF ++++YF R H P     L   VTV  + TG+MA+L+++ K++
Sbjct:  169 LSALSSPDLLHMIFPFLLHRARPQ-----EARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVLAVPRRHSPRRQXXXXXARGAGEGGGRRGEDFRGYLLKYGHCLLHRRAWMGEALEDG------------------FSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPA----FSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDA 391
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BLAST of NO24G01840 vs. NCBI_GenBank
Match: XP_005853741.1 (hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EKU22622.1 hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EWM30397.1 hypothetical protein Naga_100026g9 [Nannochloropsis gaditana])

HSP 1 Score: 86.3 bits (212), Expect = 3.400e-13
Identity = 80/268 (29.85%), Postives = 117/268 (43.66%), Query Frame = 0 
Query:  193 PITLSSLPSSLLLH-IFDFVWSGRPSYTDGTDGRRQLGTLSLVSKQWRDLAGSDQLWKPLCIARWPWLKSLKGGPVELLPSLKMEDGEEEGGREGGGEWREFCLRNGRCMSRAGIGRRMSGGTGSGRASG------------------REGGVGWGSQYTLSVEIFDRKGGFRLFCSYGQMSVMQQGVGNEGRWLTKLAVTGFAS--CWHFSAATRDPVYGRFPTIKEYFERAHEPGLDHCLCTEVTVMHKDTGKMAVLYASSKESQR 440
            P   ++L  + LLH  FDF+  GR  Y      R+QLG L+LV +QWRDLA +D+ WKP+ +  +P L            S  + D +EE G  G     +        +  AG G      T  G  +G                  R+G   W    TLS ++ D + G RLF S G +    +  G     +T + +TG        FSAA+RD   G   +I+E F+              VT   + TGKMA+L++S+K ++R
Sbjct:  231 PAPSTALGDAALLHYCFDFLVEGRLQY------RKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRL------------SPALADHDEEDGASGPDP--DAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRPIRQG--PWHEGITLSFDLHDEQDGTRLFSSTGPI----RFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKR 472
The following BLAST results are available for this feature:
BLAST of NO24G01840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM24393.13.100e-7557.95hypothetical protein Naga_100283g6 [Nannochloropsi... [more]
EWM22694.12.600e-1330.80hypothetical protein Naga_100340g3 [Nannochloropsi... [more]
XP_005853741.13.400e-1329.85hypothetical protein NGA_0168202 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002803NSK002803Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01840.1NO24G01840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100283g6gene6085Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01840.1NO24G01840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01840 ID=NO24G01840|Name=NO24G01840|organism=Nannochloropsis oceanica|type=gene|length=3075bp
ACGACAGGGCACACTGCCAGACAGACTCTCAACCACACACTCGGCGGAGC
GCGGCACTTCTCTTTTTACTTCCCACTGCAACTCCCAAGCGGCACCGCAC
GACGAGCAGTAGCAGCACAAACGGTTGCACCTGTCGAAGCATGTCTACCT
TCATGGGCACCAGCAATATTCTTGCCCTCCTCAAGATTGTGTCAGGCATG
GTGGCGGGCCCCAATGGCAAGGAGTTGTCAAATGCCATTCATTCAGGGCA
AGTGCCAGCAGAGGACCTGGAAAGCCTCGCGGGCCTCGCACACGAGCTGC
AGGCGTTGGCTGGCCGCAGTAGAAACGATAGAAGTCTCTTATCGTCGTCG
TCCTCGTCGATGCTCACAGAGAGCGAGGACACGATGATGTTGACCTCTTC
TGCCTCATCCTTGTCAGGGTTGGAGGAGAGGGAGGGAGAGGAGAACCCCT
CCTTGTCCGCCTTGGCGATCTCCCCTTTCCTCTCCTCCTCTCTGCCCCGG
TCTAACAGCATCCTAACGgtacgtcccaagtcattactcatatgacaaaa
cccatacccacatggccatgcttccttcttaaacttttgtatgcgctgtt
gcttcttacctgcctgcctgcctgcctgcctgtctgtctgtcctctctct
ctccctccctccctgctctctctgagtacctattacacacaatatttctc
cttgctgtcgactctctctcccttcacacggatcagacacgtgaccatgc
cacctgagcaaccacaacaaaataataaaacgtgactgtcgtcgcttcga
atcaatcacgcacccaaacatactctcgccctccctccgtcccttcctcc
tttccttcctcccaccttttgccaatcatagGACGATGAATCCACCAACA
GCAGCATCTCCTCGCCGTGTACCTCCACCTCCCTCTCTTTGACGCACCGC
CGCCGACCCCTCTCCCTACCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTC
CTCCTCCTCCTCGGCCCATCTCCCTGTCAAACGAAGCCATTCTTCCTCCT
ACTCCACCACCCCCTCCTCTTCTCGTCAACCCATCACCCTGTCCTCCCTT
CCTTCCTCCCTCCTCCTCCACATCTTCGATTTCGTCTGGTCGGGCAGGCC
CAGTTACACCGACGGGACGGACGGACGGAGACAACTCGGAACCCTCTCAC
TCGTCAGCAAGCAATGGCGAGATCTCGCAGGAAGCGACCAATTATGGAAA
CCGTTGTGCATCGCACGCTGGCCATGGCTGAAGAGCCTGAAGGGCGGGCC
TGTGGAGCTGCTACCGTCCCTGAAAATGGAGGACGGGGAGGAGGAGGGAG
GGAGGGAAGGAGGAGGGGAGTGGAGGGAATTCTGTCTGAGGAACGGCCGC
TGCATGAGTAGGGCAGGGATAGGGAGGAGGATGAGTGGAGGGACAGGAAG
CGGGCGGGCAAGCGGGAGGGAGGGAGGGGTGGGGTGGGGAAGCCAGTACA
CATTAAGTGTCGAGATCTTCGACCGAAAAGGCGGCTTCCGTCTCTTTTGT
TCCTATGGCCAGATGAGCGTGATGCAGCAGGGGGTGGGGAACGAAGGACG
GTGGTTGACAAAACTCGCCGTGACAGGCTTTGCGAGCTGTTGGCATTTCT
CGGCCGCCACCCGGGACCCTGTCTATGgtaagtgggcatgtcctccctcc
ctccctccctcgttttctttcctgttctaatacaggaatggctgtcccat
catcatcgtctcactccctccctccctcttaccctcagGCCGTTTCCCCA
CCATCAAGGAGTATTTTGAGCGCGCCCACGAACCCGGTCTAGACCACTGC
CTTTGTACCGAGGTAACAGTCATGCATAAAGACACGGGGAAAATGGCTGT
CCTCTATGCCTCGTCCAAGGAATCCCAACGTCGGCTCACGGCCAATAAAA
ACGGCACTTCCTACTTCGAAGAGGACCTCCGTCCCGCCACCACCTCCTCG
TCCTTCCCGATGGCAGGAGTGGATGCTCCCACCCCTTCCTCCCTCCCGCC
TTCGCACGCCATCTCTTATATGGCGGCTTCAGGGATGGCAATCAGCAAGG
TCCTCCCTTCCTCCCTCCCTCCCTCCCCCTCCTCTTCCTCCTCCCTCTCT
GCCGCTGCCGCTGCCGCGCCTACAGCTGCTGCTGCTGCTGCTGCATCACC
GGAAGAGGAGAAGGAGCAGAAATACCGCGTAGATCGCCTATACTTGATTT
TCAGCACACTGAGGAGATGGGATGTACCCAAGATTTTCGAGGGATTGGAA
TGGGCGTAAGCTGTCCCTCCTTCGCTCCGCTCCCTCCCGTCCTCTCTCCC
TCTCCTTCCTCCTATCGAGGTAGAGAAGAGCCGCACATTTAGTTTTTGTC
TATCATACATACATCAATCAGAGAGCAGGGAGAGGGAGGAGGCAGGGAGA
TGGGGTTTATTTATTCATTATTATTATCATTTTATCGTTTGCGTATCGAG
GAGTGCATCGAGCAAACACTCTATAGTCCAGATTTATTTATTTGAATAGA
TTATCATTCACTTCGGTGATATCCATTTATTCATATATATTTATGATTCA
TTTATATTTTATTGAAGCCCCTCACGACAAGAGAGAGCTTGCTGAGAATT
TTGTGGTTAAACCCATCGGCAACAATATCAACAACAGTGAGCAGCATAGA
CAGCAGTAGGACTAGAATGAATGAATCAGCTGGTGTTGCAGCAGCGGCTG
CAGCAGCAGCAGTGTCATTATCAATAGCAATAGCAGCAGCAGAAAAGAGA
AAAAAAGTACCACACACTATCAAGGTTGATGCATGATCACACATGCATAC
ACCTACACCGACCCCGACTCACACATACACATGTACTCACAGTAAAAATG
ATCACAACGAATATTTAGAAATATAGAATATATTTTTAGCAAGCGGAAGA
CAGGGAGATTTAAGGATAAGTCAGAAATGACTAGCATGACACAAAAAAGA
TGAAAGATGGAAAATTAAGGAATGGTGTAAAATATGAGCCTTTCATTAGC
AGCCGCAGCAAATGCGTCGTGAAGG
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protein sequence of NO24G01840.1

>NO24G01840.1-protein ID=NO24G01840.1-protein|Name=NO24G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MSTFMGTSNILALLKIVSGMVAGPNGKELSNAIHSGQVPAEDLESLAGLA
HELQALAGRSRNDRSLLSSSSSSMLTESEDTMMLTSSASSLSGLEEREGE
ENPSLSALAISPFLSSSLPRSNSILTDDESTNSSISSPCTSTSLSLTHRR
RPLSLPSSSSSSSSSSSSSSAHLPVKRSHSSSYSTTPSSSRQPITLSSLP
SSLLLHIFDFVWSGRPSYTDGTDGRRQLGTLSLVSKQWRDLAGSDQLWKP
LCIARWPWLKSLKGGPVELLPSLKMEDGEEEGGREGGGEWREFCLRNGRC
MSRAGIGRRMSGGTGSGRASGREGGVGWGSQYTLSVEIFDRKGGFRLFCS
YGQMSVMQQGVGNEGRWLTKLAVTGFASCWHFSAATRDPVYGRFPTIKEY
FERAHEPGLDHCLCTEVTVMHKDTGKMAVLYASSKESQRRLTANKNGTSY
FEEDLRPATTSSSFPMAGVDAPTPSSLPPSHAISYMAASGMAISKVLPSS
LPPSPSSSSSLSAAAAAAPTAAAAAAASPEEEKEQKYRVDRLYLIFSTLR
RWDVPKIFEGLEWA*
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Synonyms
Publications