NO24G01840.1, NO24G01840.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G01840.1
Unique Name	NO24G01840.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2601
Alignment location	chr24:488016..491090 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:488016..491090 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO24G01840.1 vs.
Match: EWM24393.1 (hypothetical protein Naga_100283g6 [Nannochloropsis gaditana])

HSP 1 Score: 334.3 bits (856), Expect = 7.100e-88
Identity = 183/272 (67.28%), Postives = 202/272 (74.26%), Query Frame = 0

Query:  301 MSRAGIGRRMSGGTGSGRASGREGGVGWGSQYTLSVEIFDRKGGFRLFCSYGQMSVMQQGVGNEGRWLTKLAVTGFASCWHFSAATRDPVYGRFPTIKEYFERAHEPGLDHCLCTEVTVMHKDTGKMAVLYASSKESQRRLTANKNGTSYFEEDLRPATTSSSFPMA---------GVDAPTPSSLPPSHAISYMAASGMAISKVLPSSLPPSPSSSSSLSAAAAAAPTAAAAAAASPEEEKEQKYRVDRLYLIFSTLRRWDVPKIFEGLEW 564
            M RAGIGRRM GG G        GG GWG +YTLSVEIFDRKGGFRLFCSYG++S+M QGVG EGRW+TKLAVTGFASCWHFSAA+RD V+GRF TIK+YFERAHEPGL+HCLCTEVT MHK TG+MAVLYASSKES+RRL   KNGTSYFEE+LRPA  SS+  MA         G+     S   PS  I Y+AASG+A+SKV   S PPS SS S L            A   S +EEKEQKYRVDRLYLIFST RRWD+PKIFEGLEW
Sbjct:    1 MRRAGIGRRMGGGGG--------GGAGWGEEYTLSVEIFDRKGGFRLFCSYGRVSIMHQGVGVEGRWMTKLAVTGFASCWHFSAASRDSVHGRFETIKDYFERAHEPGLEHCLCTEVTAMHKKTGRMAVLYASSKESRRRLAGEKNGTSYFEEELRPAFASSAGVMASTASGSSHPGLPPSLSSFCAPSPGIPYLAASGIAVSKV---STPPSTSSLSPL-----------PAGIPSMDEEKEQKYRVDRLYLIFSTERRWDLPKIFEGLEW 250

The following BLAST results are available for this feature:

BLAST of NO24G01840.1 vs.

BLAST of NO24G01840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24393.1	7.100e-88	67.28	hypothetical protein Naga_100283g6 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO24G01840	NO24G01840	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO24G01840.1	NO24G01840.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO24G01840.1.cds1	NO24G01840.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01840.1.cds2	NO24G01840.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01840.1.cds3	NO24G01840.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr24:488016..491090-
coding sequence from alignment at chr24:488016..491090-

mRNA sequence

>NO24G01840.1 ID=NO24G01840.1|Name=NO24G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2601bp
ACGACAGGGCACACTGCCAGACAGACTCTCAACCACACACTCGGCGGAGC
GCGGCACTTCTCTTTTTACTTCCCACTGCAACTCCCAAGCGGCACCGCAC
GACGAGCAGTAGCAGCACAAACGGTTGCACCTGTCGAAGCATGTCTACCT
TCATGGGCACCAGCAATATTCTTGCCCTCCTCAAGATTGTGTCAGGCATG
GTGGCGGGCCCCAATGGCAAGGAGTTGTCAAATGCCATTCATTCAGGGCA
AGTGCCAGCAGAGGACCTGGAAAGCCTCGCGGGCCTCGCACACGAGCTGC
AGGCGTTGGCTGGCCGCAGTAGAAACGATAGAAGTCTCTTATCGTCGTCG
TCCTCGTCGATGCTCACAGAGAGCGAGGACACGATGATGTTGACCTCTTC
TGCCTCATCCTTGTCAGGGTTGGAGGAGAGGGAGGGAGAGGAGAACCCCT
CCTTGTCCGCCTTGGCGATCTCCCCTTTCCTCTCCTCCTCTCTGCCCCGG
TCTAACAGCATCCTAACGGACGATGAATCCACCAACAGCAGCATCTCCTC
GCCGTGTACCTCCACCTCCCTCTCTTTGACGCACCGCCGCCGACCCCTCT
CCCTACCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCG
GCCCATCTCCCTGTCAAACGAAGCCATTCTTCCTCCTACTCCACCACCCC
CTCCTCTTCTCGTCAACCCATCACCCTGTCCTCCCTTCCTTCCTCCCTCC
TCCTCCACATCTTCGATTTCGTCTGGTCGGGCAGGCCCAGTTACACCGAC
GGGACGGACGGACGGAGACAACTCGGAACCCTCTCACTCGTCAGCAAGCA
ATGGCGAGATCTCGCAGGAAGCGACCAATTATGGAAACCGTTGTGCATCG
CACGCTGGCCATGGCTGAAGAGCCTGAAGGGCGGGCCTGTGGAGCTGCTA
CCGTCCCTGAAAATGGAGGACGGGGAGGAGGAGGGAGGGAGGGAAGGAGG
AGGGGAGTGGAGGGAATTCTGTCTGAGGAACGGCCGCTGCATGAGTAGGG
CAGGGATAGGGAGGAGGATGAGTGGAGGGACAGGAAGCGGGCGGGCAAGC
GGGAGGGAGGGAGGGGTGGGGTGGGGAAGCCAGTACACATTAAGTGTCGA
GATCTTCGACCGAAAAGGCGGCTTCCGTCTCTTTTGTTCCTATGGCCAGA
TGAGCGTGATGCAGCAGGGGGTGGGGAACGAAGGACGGTGGTTGACAAAA
CTCGCCGTGACAGGCTTTGCGAGCTGTTGGCATTTCTCGGCCGCCACCCG
GGACCCTGTCTATGGCCGTTTCCCCACCATCAAGGAGTATTTTGAGCGCG
CCCACGAACCCGGTCTAGACCACTGCCTTTGTACCGAGGTAACAGTCATG
CATAAAGACACGGGGAAAATGGCTGTCCTCTATGCCTCGTCCAAGGAATC
CCAACGTCGGCTCACGGCCAATAAAAACGGCACTTCCTACTTCGAAGAGG
ACCTCCGTCCCGCCACCACCTCCTCGTCCTTCCCGATGGCAGGAGTGGAT
GCTCCCACCCCTTCCTCCCTCCCGCCTTCGCACGCCATCTCTTATATGGC
GGCTTCAGGGATGGCAATCAGCAAGGTCCTCCCTTCCTCCCTCCCTCCCT
CCCCCTCCTCTTCCTCCTCCCTCTCTGCCGCTGCCGCTGCCGCGCCTACA
GCTGCTGCTGCTGCTGCTGCATCACCGGAAGAGGAGAAGGAGCAGAAATA
CCGCGTAGATCGCCTATACTTGATTTTCAGCACACTGAGGAGATGGGATG
TACCCAAGATTTTCGAGGGATTGGAATGGGCGTAAGCTGTCCCTCCTTCG
CTCCGCTCCCTCCCGTCCTCTCTCCCTCTCCTTCCTCCTATCGAGGTAGA
GAAGAGCCGCACATTTAGTTTTTGTCTATCATACATACATCAATCAGAGA
GCAGGGAGAGGGAGGAGGCAGGGAGATGGGGTTTATTTATTCATTATTAT
TATCATTTTATCGTTTGCGTATCGAGGAGTGCATCGAGCAAACACTCTAT
AGTCCAGATTTATTTATTTGAATAGATTATCATTCACTTCGGTGATATCC
ATTTATTCATATATATTTATGATTCATTTATATTTTATTGAAGCCCCTCA
CGACAAGAGAGAGCTTGCTGAGAATTTTGTGGTTAAACCCATCGGCAACA
ATATCAACAACAGTGAGCAGCATAGACAGCAGTAGGACTAGAATGAATGA
ATCAGCTGGTGTTGCAGCAGCGGCTGCAGCAGCAGCAGTGTCATTATCAA
TAGCAATAGCAGCAGCAGAAAAGAGAAAAAAAGTACCACACACTATCAAG
GTTGATGCATGATCACACATGCATACACCTACACCGACCCCGACTCACAC
ATACACATGTACTCACAGTAAAAATGATCACAACGAATATTTAGAAATAT
AGAATATATTTTTAGCAAGCGGAAGACAGGGAGATTTAAGGATAAGTCAG
AAATGACTAGCATGACACAAAAAAGATGAAAGATGGAAAATTAAGGAATG
GTGTAAAATATGAGCCTTTCATTAGCAGCCGCAGCAAATGCGTCGTGAAG
G

protein sequence of NO24G01840.1

>NO24G01840.1-protein ID=NO24G01840.1-protein|Name=NO24G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MSTFMGTSNILALLKIVSGMVAGPNGKELSNAIHSGQVPAEDLESLAGLA
HELQALAGRSRNDRSLLSSSSSSMLTESEDTMMLTSSASSLSGLEEREGE
ENPSLSALAISPFLSSSLPRSNSILTDDESTNSSISSPCTSTSLSLTHRR
RPLSLPSSSSSSSSSSSSSSAHLPVKRSHSSSYSTTPSSSRQPITLSSLP
SSLLLHIFDFVWSGRPSYTDGTDGRRQLGTLSLVSKQWRDLAGSDQLWKP
LCIARWPWLKSLKGGPVELLPSLKMEDGEEEGGREGGGEWREFCLRNGRC
MSRAGIGRRMSGGTGSGRASGREGGVGWGSQYTLSVEIFDRKGGFRLFCS
YGQMSVMQQGVGNEGRWLTKLAVTGFASCWHFSAATRDPVYGRFPTIKEY
FERAHEPGLDHCLCTEVTVMHKDTGKMAVLYASSKESQRRLTANKNGTSY
FEEDLRPATTSSSFPMAGVDAPTPSSLPPSHAISYMAASGMAISKVLPSS
LPPSPSSSSSLSAAAAAAPTAAAAAAASPEEEKEQKYRVDRLYLIFSTLR
RWDVPKIFEGLEWA*

mRNA from alignment at chr24:488016..491090-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO24G01840.1 ID=NO24G01840.1|Name=NO24G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=3075bp|location=Sequence derived from alignment at chr24:488016..491090- (Nannochloropsis oceanica)
ACGACAGGGCACACTGCCAGACAGACTCTCAACCACACACTCGGCGGAGC
GCGGCACTTCTCTTTTTACTTCCCACTGCAACTCCCAAGCGGCACCGCAC
GACGAGCAGTAGCAGCACAAACGGTTGCACCTGTCGAAGCATGTCTACCT
TCATGGGCACCAGCAATATTCTTGCCCTCCTCAAGATTGTGTCAGGCATG
GTGGCGGGCCCCAATGGCAAGGAGTTGTCAAATGCCATTCATTCAGGGCA
AGTGCCAGCAGAGGACCTGGAAAGCCTCGCGGGCCTCGCACACGAGCTGC
AGGCGTTGGCTGGCCGCAGTAGAAACGATAGAAGTCTCTTATCGTCGTCG
TCCTCGTCGATGCTCACAGAGAGCGAGGACACGATGATGTTGACCTCTTC
TGCCTCATCCTTGTCAGGGTTGGAGGAGAGGGAGGGAGAGGAGAACCCCT
CCTTGTCCGCCTTGGCGATCTCCCCTTTCCTCTCCTCCTCTCTGCCCCGG
TCTAACAGCATCCTAACGGTACGTCCCAAGTCATTACTCATATGACAAAA
CCCATACCCACATGGCCATGCTTCCTTCTTAAACTTTTGTATGCGCTGTT
GCTTCTTACCTGCCTGCCTGCCTGCCTGCCTGTCTGTCTGTCCTCTCTCT
CTCCCTCCCTCCCTGCTCTCTCTGAGTACCTATTACACACAATATTTCTC
CTTGCTGTCGACTCTCTCTCCCTTCACACGGATCAGACACGTGACCATGC
CACCTGAGCAACCACAACAAAATAATAAAACGTGACTGTCGTCGCTTCGA
ATCAATCACGCACCCAAACATACTCTCGCCCTCCCTCCGTCCCTTCCTCC
TTTCCTTCCTCCCACCTTTTGCCAATCATAGGACGATGAATCCACCAACA
GCAGCATCTCCTCGCCGTGTACCTCCACCTCCCTCTCTTTGACGCACCGC
CGCCGACCCCTCTCCCTACCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTC
CTCCTCCTCCTCGGCCCATCTCCCTGTCAAACGAAGCCATTCTTCCTCCT
ACTCCACCACCCCCTCCTCTTCTCGTCAACCCATCACCCTGTCCTCCCTT
CCTTCCTCCCTCCTCCTCCACATCTTCGATTTCGTCTGGTCGGGCAGGCC
CAGTTACACCGACGGGACGGACGGACGGAGACAACTCGGAACCCTCTCAC
TCGTCAGCAAGCAATGGCGAGATCTCGCAGGAAGCGACCAATTATGGAAA
CCGTTGTGCATCGCACGCTGGCCATGGCTGAAGAGCCTGAAGGGCGGGCC
TGTGGAGCTGCTACCGTCCCTGAAAATGGAGGACGGGGAGGAGGAGGGAG
GGAGGGAAGGAGGAGGGGAGTGGAGGGAATTCTGTCTGAGGAACGGCCGC
TGCATGAGTAGGGCAGGGATAGGGAGGAGGATGAGTGGAGGGACAGGAAG
CGGGCGGGCAAGCGGGAGGGAGGGAGGGGTGGGGTGGGGAAGCCAGTACA
CATTAAGTGTCGAGATCTTCGACCGAAAAGGCGGCTTCCGTCTCTTTTGT
TCCTATGGCCAGATGAGCGTGATGCAGCAGGGGGTGGGGAACGAAGGACG
GTGGTTGACAAAACTCGCCGTGACAGGCTTTGCGAGCTGTTGGCATTTCT
CGGCCGCCACCCGGGACCCTGTCTATGGTAAGTGGGCATGTCCTCCCTCC
CTCCCTCCCTCGTTTTCTTTCCTGTTCTAATACAGGAATGGCTGTCCCAT
CATCATCGTCTCACTCCCTCCCTCCCTCTTACCCTCAGGCCGTTTCCCCA
CCATCAAGGAGTATTTTGAGCGCGCCCACGAACCCGGTCTAGACCACTGC
CTTTGTACCGAGGTAACAGTCATGCATAAAGACACGGGGAAAATGGCTGT
CCTCTATGCCTCGTCCAAGGAATCCCAACGTCGGCTCACGGCCAATAAAA
ACGGCACTTCCTACTTCGAAGAGGACCTCCGTCCCGCCACCACCTCCTCG
TCCTTCCCGATGGCAGGAGTGGATGCTCCCACCCCTTCCTCCCTCCCGCC
TTCGCACGCCATCTCTTATATGGCGGCTTCAGGGATGGCAATCAGCAAGG
TCCTCCCTTCCTCCCTCCCTCCCTCCCCCTCCTCTTCCTCCTCCCTCTCT
GCCGCTGCCGCTGCCGCGCCTACAGCTGCTGCTGCTGCTGCTGCATCACC
GGAAGAGGAGAAGGAGCAGAAATACCGCGTAGATCGCCTATACTTGATTT
TCAGCACACTGAGGAGATGGGATGTACCCAAGATTTTCGAGGGATTGGAA
TGGGCGTAAGCTGTCCCTCCTTCGCTCCGCTCCCTCCCGTCCTCTCTCCC
TCTCCTTCCTCCTATCGAGGTAGAGAAGAGCCGCACATTTAGTTTTTGTC
TATCATACATACATCAATCAGAGAGCAGGGAGAGGGAGGAGGCAGGGAGA
TGGGGTTTATTTATTCATTATTATTATCATTTTATCGTTTGCGTATCGAG
GAGTGCATCGAGCAAACACTCTATAGTCCAGATTTATTTATTTGAATAGA
TTATCATTCACTTCGGTGATATCCATTTATTCATATATATTTATGATTCA
TTTATATTTTATTGAAGCCCCTCACGACAAGAGAGAGCTTGCTGAGAATT
TTGTGGTTAAACCCATCGGCAACAATATCAACAACAGTGAGCAGCATAGA
CAGCAGTAGGACTAGAATGAATGAATCAGCTGGTGTTGCAGCAGCGGCTG
CAGCAGCAGCAGTGTCATTATCAATAGCAATAGCAGCAGCAGAAAAGAGA
AAAAAAGTACCACACACTATCAAGGTTGATGCATGATCACACATGCATAC
ACCTACACCGACCCCGACTCACACATACACATGTACTCACAGTAAAAATG
ATCACAACGAATATTTAGAAATATAGAATATATTTTTAGCAAGCGGAAGA
CAGGGAGATTTAAGGATAAGTCAGAAATGACTAGCATGACACAAAAAAGA
TGAAAGATGGAAAATTAAGGAATGGTGTAAAATATGAGCCTTTCATTAGC
AGCCGCAGCAAATGCGTCGTGAAGG

Coding sequence (CDS) from alignment at chr24:488016..491090-

>NO24G01840.1 ID=NO24G01840.1|Name=NO24G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at chr24:488016..491090- (Nannochloropsis oceanica)
ATGTCTACCTTCATGGGCACCAGCAATATTCTTGCCCTCCTCAAGATTGT
GTCAGGCATGGTGGCGGGCCCCAATGGCAAGGAGTTGTCAAATGCCATTC
ATTCAGGGCAAGTGCCAGCAGAGGACCTGGAAAGCCTCGCGGGCCTCGCA
CACGAGCTGCAGGCGTTGGCTGGCCGCAGTAGAAACGATAGAAGTCTCTT
ATCGTCGTCGTCCTCGTCGATGCTCACAGAGAGCGAGGACACGATGATGT
TGACCTCTTCTGCCTCATCCTTGTCAGGGTTGGAGGAGAGGGAGGGAGAG
GAGAACCCCTCCTTGTCCGCCTTGGCGATCTCCCCTTTCCTCTCCTCCTC
TCTGCCCCGGTCTAACAGCATCCTAACGGACGATGAATCCACCAACAGCA
GCATCTCCTCGCCGTGTACCTCCACCTCCCTCTCTTTGACGCACCGCCGC
CGACCCCTCTCCCTACCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTC
CTCCTCCTCGGCCCATCTCCCTGTCAAACGAAGCCATTCTTCCTCCTACT
CCACCACCCCCTCCTCTTCTCGTCAACCCATCACCCTGTCCTCCCTTCCT
TCCTCCCTCCTCCTCCACATCTTCGATTTCGTCTGGTCGGGCAGGCCCAG
TTACACCGACGGGACGGACGGACGGAGACAACTCGGAACCCTCTCACTCG
TCAGCAAGCAATGGCGAGATCTCGCAGGAAGCGACCAATTATGGAAACCG
TTGTGCATCGCACGCTGGCCATGGCTGAAGAGCCTGAAGGGCGGGCCTGT
GGAGCTGCTACCGTCCCTGAAAATGGAGGACGGGGAGGAGGAGGGAGGGA
GGGAAGGAGGAGGGGAGTGGAGGGAATTCTGTCTGAGGAACGGCCGCTGC
ATGAGTAGGGCAGGGATAGGGAGGAGGATGAGTGGAGGGACAGGAAGCGG
GCGGGCAAGCGGGAGGGAGGGAGGGGTGGGGTGGGGAAGCCAGTACACAT
TAAGTGTCGAGATCTTCGACCGAAAAGGCGGCTTCCGTCTCTTTTGTTCC
TATGGCCAGATGAGCGTGATGCAGCAGGGGGTGGGGAACGAAGGACGGTG
GTTGACAAAACTCGCCGTGACAGGCTTTGCGAGCTGTTGGCATTTCTCGG
CCGCCACCCGGGACCCTGTCTATGGCCGTTTCCCCACCATCAAGGAGTAT
TTTGAGCGCGCCCACGAACCCGGTCTAGACCACTGCCTTTGTACCGAGGT
AACAGTCATGCATAAAGACACGGGGAAAATGGCTGTCCTCTATGCCTCGT
CCAAGGAATCCCAACGTCGGCTCACGGCCAATAAAAACGGCACTTCCTAC
TTCGAAGAGGACCTCCGTCCCGCCACCACCTCCTCGTCCTTCCCGATGGC
AGGAGTGGATGCTCCCACCCCTTCCTCCCTCCCGCCTTCGCACGCCATCT
CTTATATGGCGGCTTCAGGGATGGCAATCAGCAAGGTCCTCCCTTCCTCC
CTCCCTCCCTCCCCCTCCTCTTCCTCCTCCCTCTCTGCCGCTGCCGCTGC
CGCGCCTACAGCTGCTGCTGCTGCTGCTGCATCACCGGAAGAGGAGAAGG
AGCAGAAATACCGCGTAGATCGCCTATACTTGATTTTCAGCACACTGAGG
AGATGGGATGTACCCAAGATTTTCGAGGGATTGGAATGGGCGTAA

Synonyms

Publications