NO24G01770, NO24G01770 (gene) Nannochloropsis oceanica
|
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G01770 vs. NCBI_GenBank
Match: EWM24385.1 (peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana]) HSP 1 Score: 343.6 bits (880), Expect = 7.400e-91 Identity = 177/269 (65.80%), Postives = 209/269 (77.70%), Query Frame = 0
Query: 86 GGDGGVKESAIGTPRQGTRIGVRPKGAPFRGTRGDNGRGWYKLYKEEGPDGFVKYRPPTPFNWKQPPSXXXXXXXXXPKRKKVFMDISLDKEPIGKIVIELANDILPLTSKNFLLLCQGIGQEGGNVASTT-LGYKGSKIHRIVKGAGIVGGDLSTSTSTSSPSFSEKPRRKERGEGNHSALGARFFHDEGFMIPHSAPGLVSMVSAGVHRNGSHFYISTQACPHLDGRSVVFGRVVKGMEVVEKVAGTYSIRGRPVASVKVEESGVLE 354
GGDG I R GTR GVRPKG PFR +RGDNGRGWY+LYKE GP+GF +YRPPTPF+W PPS P+R KVF+ ISLDKEP+G+IV+ELA+DILPL ++NF LLCQG G+EG T LGY GS+IHR+VKGAGIVGGDLST+ + S S + +PR+++ G GNHS LG RFF DE F IPH+ PGL+SMVSAG HRNGS F+IST ACPHLDGRSVVFGRVV G+EV+E VA TY+IRGRPVA V+VEE+GV+E
Sbjct: 138 GGDGREGGKNIEKGRPGTRSGVRPKGTPFRPSRGDNGRGWYELYKEAGPEGFKRYRPPTPFDW-SPPS-TATPPSEAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGXXXXXXTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPS-SGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVME 403
BLAST of NO24G01770 vs. NCBI_GenBank
Match: EWM24386.1 (peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana]) HSP 1 Score: 325.9 bits (834), Expect = 1.600e-85 Identity = 164/246 (66.67%), Postives = 196/246 (79.67%), Query Frame = 0
Query: 109 PKGAPFRGTRGDNGRGWYKLYKEEGPDGFVKYRPPTPFNWKQPPSXXXXXXXXXPKRKKVFMDISLDKEPIGKIVIELANDILPLTSKNFLLLCQGIGQEGGNVASTT-LGYKGSKIHRIVKGAGIVGGDLSTSTSTSSPSFSEKPRRKERGEGNHSALGARFFHDEGFMIPHSAPGLVSMVSAGVHRNGSHFYISTQACPHLDGRSVVFGRVVKGMEVVEKVAGTYSIRGRPVASVKVEESGVLE 354
P G PFR +RGDNGRGWY+LYKE GP+GF +YRPPTPF+W PPS P+R KVF+ ISLDKEP+G+IV+ELA+DILPL ++NF LLCQG G+EG T LGY GS+IHR+VKGAGIVGGDLST+ + S S + +PR+++ G GNHS LG RFF DE F IPH+ PGL+SMVSAG HRNGS F+IST ACPHLDGRSVVFGRVV G+EV+E VA TY+IRGRPVA V+VEE+GV+E
Sbjct: 24 PPGTPFRPSRGDNGRGWYELYKEAGPEGFKRYRPPTPFDW-SPPS-TATPPSEAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGXXXXXXTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPS-SGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVME 266
BLAST of NO24G01770 vs. NCBI_GenBank
Match: CBJ26713.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 194.1 bits (492), Expect = 7.200e-46 Identity = 121/279 (43.37%), Postives = 152/279 (54.48%), Query Frame = 0
Query: 116 GTRGDNGRGWYKLYKEEGPDGFVKYRPPTPFNWKQP----------PSXXXXXXXXXPKRKKVFMDISLDKEPIGKIVIELANDILPLTSKNFLLLCQGI---------------------------------GQEGGNVASTTLGYKGSKIHRIVKGAGIVGGDLSTSTSTSSPSFSEKPRRKERGEGNHSAL-GARFFHDEGFMIPHSAPGLVSMVSAGVHRNGSHFYISTQACPHLDGRSVVFGRVVKGMEVVEKVAGTYSIRGRPVASVKVEESG 351
GTR GRGWY+ Y+ GPD F K R P PF+W P XXXXXXXXX F +S+D P G++ ELA+D+LP+TS+NFL LC G+ LGYKGS IHR+V G GI+GGD+ G+ +HSA G RFF DE F+IPH+APGL++M ++G+H NGS FYI+T+A HLDGRSV FGRV KG+EVV V G YSIRG+PV+ + +EE G
Sbjct: 20 GTRASTGRGWYQRYQRMGPDAFRKARAPNPFDWDTPLAPPAPEAGAXXXXXXXXXXXXXXXXXFFAMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGYKGSVIHRVVTGTGIMGGDV----------------EGYGGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECG 282
BLAST of NO24G01770 vs. NCBI_GenBank
Match: XP_018506105.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X1 [Pyrus x bretschneideri] >XP_018506106.1 PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X1 [Pyrus x bretschneideri]) HSP 1 Score: 146.4 bits (368), Expect = 1.700e-31 Identity = 81/194 (41.75%), Postives = 114/194 (58.76%), Query Frame = 0
Query: 164 KRKKVFMDISLDKEPIGKIVIELANDILPLTSKNFLLLC---QGIGQEGGNVASTTLGYKGSKIHRIVKGAGIVGGDLSTSTSTSSPSFSEKPRRKERGEGNHSALGARFFHDEGFMIPHSAPGLVSMVSAGVHRNGSHFYISTQACPHLDGRSVVFGRVVKGMEVVEKVAGTYSIRGRPVASVKVEESGVLEE 355
K +VF+D+S+D++P+ +IVIEL D++P T++NF LC +GIG+ G L YKGS HR++KG GGD S G G S G + F DE F + H PGL+SM +AG + NGS F+I + PHLDG+ VVFG+VVKGM+VVEK+ + G+P+ +VK+ + G E
Sbjct: 5 KNPRVFLDVSIDRDPVEQIVIELFADVVPKTAENFRALCTGEKGIGKSTGK----PLHYKGSTFHRVIKGFMAQGGDFSNG----------------NGTGGESIYGGK-FADENFNLKHDRPGLLSMANAGPNTNGSQFFIIFRRQPHLDGKHVVFGKVVKGMDVVEKIEKVGTADGKPLETVKIVDCGEFSE 177
BLAST of NO24G01770 vs. NCBI_GenBank
Match: XP_018506107.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X2 [Pyrus x bretschneideri]) HSP 1 Score: 146.4 bits (368), Expect = 1.700e-31 Identity = 81/194 (41.75%), Postives = 114/194 (58.76%), Query Frame = 0
Query: 164 KRKKVFMDISLDKEPIGKIVIELANDILPLTSKNFLLLC---QGIGQEGGNVASTTLGYKGSKIHRIVKGAGIVGGDLSTSTSTSSPSFSEKPRRKERGEGNHSALGARFFHDEGFMIPHSAPGLVSMVSAGVHRNGSHFYISTQACPHLDGRSVVFGRVVKGMEVVEKVAGTYSIRGRPVASVKVEESGVLEE 355
K +VF+D+S+D++P+ +IVIEL D++P T++NF LC +GIG+ G L YKGS HR++KG GGD S G G S G + F DE F + H PGL+SM +AG + NGS F+I + PHLDG+ VVFG+VVKGM+VVEK+ + G+P+ +VK+ + G E
Sbjct: 5 KNPRVFLDVSIDRDPVEQIVIELFADVVPKTAENFRALCTGEKGIGKSTGK----PLHYKGSTFHRVIKGFMAQGGDFSNG----------------NGTGGESIYGGK-FADENFNLKHDRPGLLSMANAGPNTNGSQFFIIFRRQPHLDGKHVVFGKVVKGMDVVEKIEKVGTADGKPLETVKIVDCGEFSE 177
BLAST of NO24G01770 vs. NCBI_GenBank
Match: XP_009370747.2 (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Pyrus x bretschneideri]) HSP 1 Score: 146.4 bits (368), Expect = 1.700e-31 Identity = 81/194 (41.75%), Postives = 114/194 (58.76%), Query Frame = 0
Query: 164 KRKKVFMDISLDKEPIGKIVIELANDILPLTSKNFLLLC---QGIGQEGGNVASTTLGYKGSKIHRIVKGAGIVGGDLSTSTSTSSPSFSEKPRRKERGEGNHSALGARFFHDEGFMIPHSAPGLVSMVSAGVHRNGSHFYISTQACPHLDGRSVVFGRVVKGMEVVEKVAGTYSIRGRPVASVKVEESGVLEE 355
K +VF+D+S+D++P+ +IVIEL D++P T++NF LC +GIG+ G L YKGS HR++KG GGD S G G S G + F DE F + H PGL+SM +AG + NGS F+I + PHLDG+ VVFG+VVKGM+VVEK+ + G+P+ +VK+ + G E
Sbjct: 5 KNPRVFLDVSIDRDPVEQIVIELFADVVPKTAENFRALCTGEKGIGKSTGK----PLHYKGSTFHRVIKGFMAQGGDFSNG----------------NGTGGESIYGGK-FADENFNLKHDRPGLLSMANAGPNTNGSQFFIIFRRQPHLDGKHVVFGKVVKGMDVVEKIEKVGTADGKPLETVKIVDCGEFSE 177
BLAST of NO24G01770 vs. NCBI_GenBank
Match: XP_018506109.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X4 [Pyrus x bretschneideri]) HSP 1 Score: 146.4 bits (368), Expect = 1.700e-31 Identity = 81/194 (41.75%), Postives = 114/194 (58.76%), Query Frame = 0
Query: 164 KRKKVFMDISLDKEPIGKIVIELANDILPLTSKNFLLLC---QGIGQEGGNVASTTLGYKGSKIHRIVKGAGIVGGDLSTSTSTSSPSFSEKPRRKERGEGNHSALGARFFHDEGFMIPHSAPGLVSMVSAGVHRNGSHFYISTQACPHLDGRSVVFGRVVKGMEVVEKVAGTYSIRGRPVASVKVEESGVLEE 355
K +VF+D+S+D++P+ +IVIEL D++P T++NF LC +GIG+ G L YKGS HR++KG GGD S G G S G + F DE F + H PGL+SM +AG + NGS F+I + PHLDG+ VVFG+VVKGM+VVEK+ + G+P+ +VK+ + G E
Sbjct: 5 KNPRVFLDVSIDRDPVEQIVIELFADVVPKTAENFRALCTGEKGIGKSTGK----PLHYKGSTFHRVIKGFMAQGGDFSNG----------------NGTGGESIYGGK-FADENFNLKHDRPGLLSMANAGPNTNGSQFFIIFRRQPHLDGKHVVFGKVVKGMDVVEKIEKVGTADGKPLETVKIVDCGEFSE 177
BLAST of NO24G01770 vs. NCBI_GenBank
Match: XP_018506110.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X5 [Pyrus x bretschneideri]) HSP 1 Score: 146.4 bits (368), Expect = 1.700e-31 Identity = 81/194 (41.75%), Postives = 114/194 (58.76%), Query Frame = 0
Query: 164 KRKKVFMDISLDKEPIGKIVIELANDILPLTSKNFLLLC---QGIGQEGGNVASTTLGYKGSKIHRIVKGAGIVGGDLSTSTSTSSPSFSEKPRRKERGEGNHSALGARFFHDEGFMIPHSAPGLVSMVSAGVHRNGSHFYISTQACPHLDGRSVVFGRVVKGMEVVEKVAGTYSIRGRPVASVKVEESGVLEE 355
K +VF+D+S+D++P+ +IVIEL D++P T++NF LC +GIG+ G L YKGS HR++KG GGD S G G S G + F DE F + H PGL+SM +AG + NGS F+I + PHLDG+ VVFG+VVKGM+VVEK+ + G+P+ +VK+ + G E
Sbjct: 5 KNPRVFLDVSIDRDPVEQIVIELFADVVPKTAENFRALCTGEKGIGKSTGK----PLHYKGSTFHRVIKGFMAQGGDFSNG----------------NGTGGESIYGGK-FADENFNLKHDRPGLLSMANAGPNTNGSQFFIIFRRQPHLDGKHVVFGKVVKGMDVVEKIEKVGTADGKPLETVKIVDCGEFSE 177
BLAST of NO24G01770 vs. NCBI_GenBank
Match: XP_008355416.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63-like [Malus domestica] >XP_008355417.1 PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63-like [Malus domestica]) HSP 1 Score: 145.6 bits (366), Expect = 3.000e-31 Identity = 81/194 (41.75%), Postives = 114/194 (58.76%), Query Frame = 0
Query: 164 KRKKVFMDISLDKEPIGKIVIELANDILPLTSKNFLLLC---QGIGQEGGNVASTTLGYKGSKIHRIVKGAGIVGGDLSTSTSTSSPSFSEKPRRKERGEGNHSALGARFFHDEGFMIPHSAPGLVSMVSAGVHRNGSHFYISTQACPHLDGRSVVFGRVVKGMEVVEKVAGTYSIRGRPVASVKVEESGVLEE 355
K VF+D+S+D++P+ +IVIEL D++P T++NF LC +GIG+ G + L YKGS HR++KG GGD S G G S G + F DE F + H PGL+SM +AG + NGS F+I + PHLDG+ VVFG+VVKGM+VVEK+ + G+P+ +VK+ + G E
Sbjct: 5 KNPCVFLDVSIDRDPVEQIVIELFADVVPKTAENFRALCTGEKGIGKSTGKL----LHYKGSTFHRVIKGFMAQGGDFSNG----------------NGTGGESIYGGK-FADENFKLKHDRPGLLSMANAGPNTNGSQFFIIFRRQPHLDGKHVVFGKVVKGMDVVEKIEKVGTADGKPLETVKIVDCGEFSE 177
BLAST of NO24G01770 vs. NCBI_GenBank
Match: XP_021821900.1 (peptidyl-prolyl cis-trans isomerase CYP63 isoform X2 [Prunus avium]) HSP 1 Score: 144.4 bits (363), Expect = 6.600e-31 Identity = 83/194 (42.78%), Postives = 112/194 (57.73%), Query Frame = 0
Query: 164 KRKKVFMDISLDKEPIGKIVIELANDILPLTSKNFLLLC---QGIGQEGGNVASTTLGYKGSKIHRIVKGAGIVGGDLSTSTSTSSPSFSEKPRRKERGEGNHSALGARFFHDEGFMIPHSAPGLVSMVSAGVHRNGSHFYISTQACPHLDGRSVVFGRVVKGMEVVEKVAGTYSIRGRPVASVKVEESGVLEE 355
K VF+D+S D +P+ ++VIEL D++P T++NF LC +GIG+ G L YKGS+ HRI+KG GGD S G G S G + F DE F + H PGL+SM +AG + NGS F+I + PHLDG+ VVFG+VVKGMEVVEK+ S G+P +VK+ + G + E
Sbjct: 5 KNPCVFLDVSTDGDPMERVVIELFADVVPKTAENFRALCTGDKGIGKSTGK----PLHYKGSQFHRIIKGFMAQGGDFSNG----------------NGTGGESIYGGK-FADENFKLKHDGPGLLSMANAGPNTNGSQFFIIFRHQPHLDGKHVVFGKVVKGMEVVEKIERVGSADGKPFQTVKIVDCGEVSE 177 The following BLAST results are available for this feature:
BLAST of NO24G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G01770 ID=NO24G01770|Name=NO24G01770|organism=Nannochloropsis oceanica|type=gene|length=1548bpback to top protein sequence of NO24G01770.1 >NO24G01770.1-protein ID=NO24G01770.1-protein|Name=NO24G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=355bpback to top Synonyms
Publications
|