NO24G01770.1, NO24G01770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01770.1
Unique NameNO24G01770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1352
Alignment locationchr24:469394..470941 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:469394..470941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO24G01770.1 vs.
Match: EWM24385.1 (peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 361.3 bits (926), Expect = 3.400e-96
Identity = 206/325 (63.38%), Postives = 248/325 (76.31%), Query Frame = 0 
Query:   33 STTSTTHTSSSSSSSSSSSSSTSSSTCASSSISPIWVLRHHHSTKAATANAAV---GGDGGVKESAIGTPRQGTRIGVRPKGAPFRGTRGDNGRGWYKLYKEEGPDGFVKYRPPTPFNWKQPPSSSSPSSSSVPKRKKVFMDISLDKEPIGKIVIELANDILPLTSKNFLLLCQGIGQEGGNVASTT-LGYKGSKIHRIVKGAGIVGGDLSTSTSTSSPSFSEKPRRKERGEGNHSALGARFFHDEGFMIPHSAPGLVSMVSAGVHRNGSHFYISTQACPHLDGRSVVFGRVVKGMEVVEKVAGTYSIRGRPVASVKVEESGVLE 354
            S   +   SSSSSSSSS SSS+  S+ +SSS S   + R HHSTK +    AV   GGDG      I   R GTR GVRPKG PFR +RGDNGRGWY+LYKE GP+GF +YRPPTPF+W  PPS+++P S + P+R KVF+ ISLDKEP+G+IV+ELA+DILPL ++NF LLCQG G+EGG     T LGY GS+IHR+VKGAGIVGGDLST+ +  S S + +PR+++ G GNHS LG RFF DE F IPH+ PGL+SMVSAG HRNGS F+IST ACPHLDGRSVVFGRVV G+EV+E VA TY+IRGRPVA V+VEE+GV+E
Sbjct:   82 SRPRSNSNSSSSSSSSSDSSSSDDSSHSSSSNSSRNLARRHHSTKTSAHAQAVEEEGGDGREGGKNIEKGRPGTRSGVRPKGTPFRPSRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWS-PPSTATPPSEA-PRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPS-SGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVME 403
The following BLAST results are available for this feature:
BLAST of NO24G01770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24385.13.400e-9663.38peptidyl-prolyl cis-trans isomerase [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01770NO24G01770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01770.1NO24G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01770.1.cds1NO24G01770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01770.1.cds2NO24G01770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01770.1 ID=NO24G01770.1|Name=NO24G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1352bp
ATGCGCGGTGTCCGGGCCTTGATTCAGCGTGATGCTTGTCACCATGCTCA
CCATCGGGCCCTTGCCACCGGTGTTGCCAAAGCGGTCTCTACGACGAGCA
CCACTTCCACCACGCACACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGTACCAGCAGTAGCACCTGTGCGAGCAGTAGCATCAGCCCAAT
TTGGGTCCTCCGCCATCACCACAGTACCAAAGCAGCGACGGCTAACGCAG
CGGTCGGAGGCGACGGTGGGGTGAAAGAAAGTGCCATAGGCACTCCAAGA
CAAGGGACACGAATTGGTGTGCGACCCAAAGGCGCGCCCTTTCGTGGCAC
CCGCGGTGACAATGGCCGGGGGTGGTATAAACTCTACAAGGAAGAAGGGC
CCGACGGCTTCGTCAAGTACCGCCCTCCCACCCCTTTTAACTGGAAGCAA
CCTCCCTCGTCCTCCTCCCCCTCCTCCTCCTCTGTCCCGAAACGAAAGAA
AGTCTTCATGGACATTTCGCTCGACAAGGAACCCATAGGAAAGATTGTTA
TTGAACTAGCCAATGACATCCTCCCCCTCACCTCGAAAAATTTCCTCCTC
CTCTGCCAAGGGATTGGCCAGGAGGGAGGGAACGTTGCCAGCACCACACT
AGGTTACAAAGGCAGCAAGATCCACCGCATTGTCAAGGGGGCAGGGATCG
TGGGTGGAGATCTGAGCACCAGCACCAGCACCTCTTCGCCTTCATTTTCG
GAAAAACCGAGGAGGAAGGAACGGGGGGAAGGCAACCATTCTGCCTTGGG
GGCTCGTTTTTTCCATGACGAGGGCTTTATGATTCCTCATTCAGCTCCTG
GTCTGGTGAGTATGGTGAGTGCAGGCGTGCATAGGAATGGGTCACATTTC
TACATCTCGACCCAGGCCTGCCCCCATCTGGATGGGAGGAGCGTGGTGTT
TGGACGGGTGGTGAAGGGGATGGAGGTGGTGGAGAAGGTGGCGGGCACGT
ATTCTATTAGAGGGCGGCCTGTAGCTAGTGTGAAGGTTGAGGAGTCGGGG
GTGTTGGAGGAGTAGGGAGGTCAAGAAGAGGAGGATTGAGGGAGGGACTG
GGGGAGGCAAGGAATTAGATAGGAGCGATGAAGGGTACCAGGTAAGGTAA
AGGAATTGCAATAGGCCCCCAAAAAGAATAAGAGAATTAGATGCAACAGG
AACATATGCGGGCGATATGCGAGAAGTTATTTTTGAGTGGGAAACAAAGA
AGAGGAAATCTTGGAGACGGCTGTTCTAGGGCGCGTTTGCTTATGCTTCC
AAACGCCAAAATAGACAAAACTACCAGAAACAAAAAAGAAAAAGTCTGAA
TA
back to top

protein sequence of NO24G01770.1

>NO24G01770.1-protein ID=NO24G01770.1-protein|Name=NO24G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MRGVRALIQRDACHHAHHRALATGVAKAVSTTSTTSTTHTSSSSSSSSSS
SSSTSSSTCASSSISPIWVLRHHHSTKAATANAAVGGDGGVKESAIGTPR
QGTRIGVRPKGAPFRGTRGDNGRGWYKLYKEEGPDGFVKYRPPTPFNWKQ
PPSSSSPSSSSVPKRKKVFMDISLDKEPIGKIVIELANDILPLTSKNFLL
LCQGIGQEGGNVASTTLGYKGSKIHRIVKGAGIVGGDLSTSTSTSSPSFS
EKPRRKERGEGNHSALGARFFHDEGFMIPHSAPGLVSMVSAGVHRNGSHF
YISTQACPHLDGRSVVFGRVVKGMEVVEKVAGTYSIRGRPVASVKVEESG
VLEE*
back to top

mRNA from alignment at chr24:469394..470941+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01770.1 ID=NO24G01770.1|Name=NO24G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp|location=Sequence derived from alignment at chr24:469394..470941+ (Nannochloropsis oceanica)
ATGCGCGGTGTCCGGGCCTTGATTCAGCGTGATGCTTGTCACCATGCTCA
CCATCGGGCCCTTGCCACCGGTGTTGCCAAAGCGGTCTCTACGACGAGCA
CCACTTCCACCACGCACACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGTACCAGCAGTAGCACCTGTGCGAGCAGTAGCATCAGCCCAAT
TTGGGTCCTCCGCCATCACCACAGTACCAAAGCAGCGACGGCTAACGCAG
CGGTCGGAGGCGACGGTGGGGTGAAAGAAAGTGCCATAGGCACTCCAAGA
CAAGGGACACGAATTGGTGTGCGACCCAAAGGTATGTCTCCGTGTGTGCA
AAGCAAGGGGAAGGCGGAAATGCTCATCGATGCGTTTGTCAGAATGCAAC
CGACCATTCACTTGCTGTCCCTGTCTCGGTCACTGCTTCCCCCATTTCTC
CAATTTTAATTTCATGACATCCATCCACCAATGCTGCCTTCAATTATCCC
ACCTACCCAAAACATACATACACACAGGCGCGCCCTTTCGTGGCACCCGC
GGTGACAATGGCCGGGGGTGGTATAAACTCTACAAGGAAGAAGGGCCCGA
CGGCTTCGTCAAGTACCGCCCTCCCACCCCTTTTAACTGGAAGCAACCTC
CCTCGTCCTCCTCCCCCTCCTCCTCCTCTGTCCCGAAACGAAAGAAAGTC
TTCATGGACATTTCGCTCGACAAGGAACCCATAGGAAAGATTGTTATTGA
ACTAGCCAATGACATCCTCCCCCTCACCTCGAAAAATTTCCTCCTCCTCT
GCCAAGGGATTGGCCAGGAGGGAGGGAACGTTGCCAGCACCACACTAGGT
TACAAAGGCAGCAAGATCCACCGCATTGTCAAGGGGGCAGGGATCGTGGG
TGGAGATCTGAGCACCAGCACCAGCACCTCTTCGCCTTCATTTTCGGAAA
AACCGAGGAGGAAGGAACGGGGGGAAGGCAACCATTCTGCCTTGGGGGCT
CGTTTTTTCCATGACGAGGGCTTTATGATTCCTCATTCAGCTCCTGGTCT
GGTGAGTATGGTGAGTGCAGGCGTGCATAGGAATGGGTCACATTTCTACA
TCTCGACCCAGGCCTGCCCCCATCTGGATGGGAGGAGCGTGGTGTTTGGA
CGGGTGGTGAAGGGGATGGAGGTGGTGGAGAAGGTGGCGGGCACGTATTC
TATTAGAGGGCGGCCTGTAGCTAGTGTGAAGGTTGAGGAGTCGGGGGTGT
TGGAGGAGTAGGGAGGTCAAGAAGAGGAGGATTGAGGGAGGGACTGGGGG
AGGCAAGGAATTAGATAGGAGCGATGAAGGGTACCAGGTAAGGTAAAGGA
ATTGCAATAGGCCCCCAAAAAGAATAAGAGAATTAGATGCAACAGGAACA
TATGCGGGCGATATGCGAGAAGTTATTTTTGAGTGGGAAACAAAGAAGAG
GAAATCTTGGAGACGGCTGTTCTAGGGCGCGTTTGCTTATGCTTCCAAAC
GCCAAAATAGACAAAACTACCAGAAACAAAAAAGAAAAAGTCTGAATA
back to top

Coding sequence (CDS) from alignment at chr24:469394..470941+

>NO24G01770.1 ID=NO24G01770.1|Name=NO24G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at chr24:469394..470941+ (Nannochloropsis oceanica)
ATGCGCGGTGTCCGGGCCTTGATTCAGCGTGATGCTTGTCACCATGCTCA
CCATCGGGCCCTTGCCACCGGTGTTGCCAAAGCGGTCTCTACGACGAGCA
CCACTTCCACCACGCACACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGTACCAGCAGTAGCACCTGTGCGAGCAGTAGCATCAGCCCAAT
TTGGGTCCTCCGCCATCACCACAGTACCAAAGCAGCGACGGCTAACGCAG
CGGTCGGAGGCGACGGTGGGGTGAAAGAAAGTGCCATAGGCACTCCAAGA
CAAGGGACACGAATTGGTGTGCGACCCAAAGGCGCGCCCTTTCGTGGCAC
CCGCGGTGACAATGGCCGGGGGTGGTATAAACTCTACAAGGAAGAAGGGC
CCGACGGCTTCGTCAAGTACCGCCCTCCCACCCCTTTTAACTGGAAGCAA
CCTCCCTCGTCCTCCTCCCCCTCCTCCTCCTCTGTCCCGAAACGAAAGAA
AGTCTTCATGGACATTTCGCTCGACAAGGAACCCATAGGAAAGATTGTTA
TTGAACTAGCCAATGACATCCTCCCCCTCACCTCGAAAAATTTCCTCCTC
CTCTGCCAAGGGATTGGCCAGGAGGGAGGGAACGTTGCCAGCACCACACT
AGGTTACAAAGGCAGCAAGATCCACCGCATTGTCAAGGGGGCAGGGATCG
TGGGTGGAGATCTGAGCACCAGCACCAGCACCTCTTCGCCTTCATTTTCG
GAAAAACCGAGGAGGAAGGAACGGGGGGAAGGCAACCATTCTGCCTTGGG
GGCTCGTTTTTTCCATGACGAGGGCTTTATGATTCCTCATTCAGCTCCTG
GTCTGGTGAGTATGGTGAGTGCAGGCGTGCATAGGAATGGGTCACATTTC
TACATCTCGACCCAGGCCTGCCCCCATCTGGATGGGAGGAGCGTGGTGTT
TGGACGGGTGGTGAAGGGGATGGAGGTGGTGGAGAAGGTGGCGGGCACGT
ATTCTATTAGAGGGCGGCCTGTAGCTAGTGTGAAGGTTGAGGAGTCGGGG
GTGTTGGAGGAGTAG
back to top
Synonyms
Publications