NO24G01650, NO24G01650 (gene) Nannochloropsis oceanica

Overview
NameNO24G01650
Unique NameNO24G01650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2166
Alignment locationchr24:438450..440615 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:438450..440615 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO24G01650 vs. NCBI_GenBank
Match: EWM24364.1 (putative domain XH [Nannochloropsis gaditana])

HSP 1 Score: 118.6 bits (296), Expect = 4.800e-23
Identity = 92/204 (45.10%), Postives = 117/204 (57.35%), Query Frame = 0 
Query:  142 MNEAKSELIKAARDYLPDLIPVRIFCEATEEEVEEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERARNVVEQAGDALDDLLRNATVDPFIRHQGEITGVDISLHPSLHAFSRKWGRAMTDLYVEKRREIEKYCPSGHYPTPVLWEGGKEGAGGKEISLPEVLRRILQALRKER 346
            +NEAK  L++A    L D+IPV +FCEAT EEVE+AL                          XXXXXXXXXXXXXXXXXX                  +V +A DA+D L+R+AT DPF R  G I G + S H  L +   +WG AM DL V K+ EIEK+CPSGHYPTPVLW+       GKE+++  V+RR+++ LR+ R
Sbjct:   41 LNEAKHILVEAGTAELSDIIPVHVFCEATYEEVEKALIKDVRLPQLISSPKGGKNVDNNTSSIXXXXXXXXXXXXXXXXXXKGKQICRSA---------LVYRALDAVDSLVRDATFDPFHRQHGRIIGTNHS-HKLLLSLCEEWGPAMADLVVLKKEEIEKFCPSGHYPTPVLWK------EGKEVTIGAVVRRMVEVLRETR 228
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BLAST of NO24G01650 vs. NCBI_GenBank
Match: EWM22930.1 (putative domain XH [Nannochloropsis gaditana])

HSP 1 Score: 81.3 bits (199), Expect = 8.500e-12
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 0 
Query:  249 LDDLLRNATVDPFIRHQGEITGVDISLHPSLHAFSRKWGRAMTDLYVEKRREIEKYCPSGHYPTPVLWEGGKEGAGGKE 328
            +D  +R+A+ DP +R +G I GVD   H  L     ++GRAM +L V K++E+E+YCPSG YP  VLW G +   GG+E
Sbjct:  229 IDATIRDASFDPLMRQEGRIVGVDWD-HMVLRNLQEEYGRAMAELVVAKKKEVERYCPSGSYPVLVLWAGEEGRGGGRE 306
The following BLAST results are available for this feature:
BLAST of NO24G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24364.14.800e-2345.10putative domain XH [Nannochloropsis gaditana][more]
EWM22930.18.500e-1245.57putative domain XH [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002828NSK002828Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01650.1NO24G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|133418gene_7389Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100246g9gene6106Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01650.1NO24G01650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01650 ID=NO24G01650|Name=NO24G01650|organism=Nannochloropsis oceanica|type=gene|length=2166bp
ATGGCAGCGCCTATTCTTGAGGGTGGAGGGGGAGAGGGAGACCAGGGAGA
AGGAGGGAAGCGAGGAGGAGGGAGGCGGAAATATGAGGCAGGGGAAAAGA
GAAAGAGGAAGCGAAGGAGGGCGTCAACTGCTCTTGAGAATGATGCATGG
AGGTCGACGACCGACGGGGGAAAGGGAGGAGAGGGAGGGGAGGGTGGGAG
GGAGGACGACTCGAGAGTAGGGCGGCGCATGGATGAGAGATTGAGGGAAC
AGCAACGTCAGCACGAGGTTGAGATTGAGACATTGAAGgtaggggaggga
gggaggcagtgagggaggtagagaaggagggagggagggaaggaggacga
cagatttaggtaaatcgcacgttctcgcggtgggtgggagggagggaggg
agggagggagggagggaaagacagagggcgggaatgaccgctccctcacg
tattacacgtcataccacctgcacagagcgaacacgacgaggagcttgca
aggatggaacgaatcatccgtacctctttattagcccccaccatcaagca
aagccctgcatcctcccttcctgactgccccctccctttatccctcccat
cctccctccaaagGAGAAGGAGTTGGTTGAGGCCACGATGAGGATCAAGG
AGCTGCTGAAGGAGGTGGAAAGTCGTGACCAAGAGGTGAAGCACAGCGAA
TCAATGTTCAACATCATGACACTGAAACACAATGCATTGAACTCAGgtga
gcgaggggtggagggagggagggagggggaggtcgtggggttgtagaagg
aggtggagcacctgcataataataataatgaagtattatgagcgtgccct
ccgagcacgtcgagctcaatcggacgagggggagggggaggataacgagg
agtcatggcggcaatttcattagattaccgtatctttcagtccctagaac
accaaccacaaatgctccatcccttcgctccccctcccctcttttccagT
CATGAACGAAGCCAAAAGCGAGCTGATTAAGGCAGCCCGGGATTATCTCC
CCGATCTGATCCCTGTCCGTATTTTTTGCGAGGCCACGGAGGAAGAGGTA
GAGGAGGCCCTTCTCAAAGACGGATGCCTCCCTCCCCCTCTCCCTCCCCC
CTCCCTTCCTCTTTCTGTTCCTCCCCTTTCCGCCACgttggaagctatgg
aatccgaagtagcagcgcaaggttaattgctcgacaaaatacgcacgcca
gAAGGACCAGCACCAGCAACACCGCTAACATTTATACCGCCGGCAACAGC
ACCGCCTGGAGTAGCAGCAGCAGCAACACCACTACCACCACCATCGAGGA
GAGAGCCCGTAATGTCGTGGAACAGGCGGGTGATGCGCTAGACGATCTCC
TTCGCAACGCTACCGTAGATCCCTTCATCCGTCACCAGGGGGAGATAACC
GGCGTCGATATCTCCCTCCATCCCTCCCTCCACGCCTTCTCTCGGAAATG
GGGTCGCGCCATGACTGATTTGTACGTCGAAAAAAGAAGAGAAATCGAGA
AGTACTGTCCGTCGGGGCATTATCCCACCCCAGTGCTGTGGGAAGGAGGG
AAGGAGGGAGCGGGAGGGAAGGAGATCTCATTGCCCGAGGTGTTGAGAAG
GATATTGCAGGCTTTAAGGAAGGAGAGGGAGGGGAGCAGAGAAGGGGAGG
GAGGGAGGGAGGGACGTGGGGGTGGGGTGGCGGGGGAGGAGGAGGGAGGC
GTAGGGGGCTTACAAGGGAAAGAGAAGGAGGAAGGGGAGGAGAAGAGAGA
AGTGGAGAAAGAGAAGAATAGAGAGGAAGAGGTAGTGGTGCTGGAGGGAG
AGAAGATGGAGGAGGAGAAGAAGAAGAAAGAGGAGGAGGATAAGGAGAAG
ATGGGCCAGGGCAGGGAAAGAGGAGAATATAGGGAGGCGTCCGGATCACC
ACCTCTTTGACATGTAGAAAGTGTAGAATTACTCATGGTAGTGTCCATAT
TTTAGATTGATTTTGTCGCCGAATAATTTGTCGAGTAAACAAGAAGACGA
CGAGATGGACGAGTGGAGAGAGGGAGAGAGTGAAGATGATGATAGTCAGA
AGCGGGACAGAATCTCTCCATCGAAAAGACGGACGACGACGACGACGATT
ACAGCCGAAGGAAAAG
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protein sequence of NO24G01650.1

>NO24G01650.1-protein ID=NO24G01650.1-protein|Name=NO24G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MAAPILEGGGGEGDQGEGGKRGGGRRKYEAGEKRKRKRRRASTALENDAW
RSTTDGGKGGEGGEGGREDDSRVGRRMDERLREQQRQHEVEIETLKEKEL
VEATMRIKELLKEVESRDQEVKHSESMFNIMTLKHNALNSVMNEAKSELI
KAARDYLPDLIPVRIFCEATEEEVEEALLKDGCLPPPLPPPSLPLSVPPL
SATRTSTSNTANIYTAGNSTAWSSSSSNTTTTTIEERARNVVEQAGDALD
DLLRNATVDPFIRHQGEITGVDISLHPSLHAFSRKWGRAMTDLYVEKRRE
IEKYCPSGHYPTPVLWEGGKEGAGGKEISLPEVLRRILQALRKEREGSRE
GEGGREGRGGGVAGEEEGGVGGLQGKEKEEGEEKREVEKEKNREEEVVVL
EGEKMEEEKKKKEEEDKEKMGQGRERGEYREASGSPPL*
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Synonyms
Publications