NO24G01650.1, NO24G01650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01650.1
Unique NameNO24G01650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1523
Alignment locationchr24:438450..440615 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:438450..440615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01650.1 vs.
Match: EWM24364.1 (putative domain XH [Nannochloropsis gaditana])

HSP 1 Score: 136.0 bits (341), Expect = 2.900e-28
Identity = 85/204 (41.67%), Postives = 119/204 (58.33%), Query Frame = 0 
Query:  142 MNEAKSELIKAARDYLPDLIPVRIFCEATEEEVEEALLKDGCLPPPLPPPSLPLSVPPLSATRTSTSNTANIYTAGNSTAWSSSSSNTTTTTIEERARNVVEQAGDALDDLLRNATVDPFIRHQGEITGVDISLHPSLHAFSRKWGRAMTDLYVEKRREIEKYCPSGHYPTPVLWEGGKEGAGGKEISLPEVLRRILQALRKER 346
            +NEAK  L++A    L D+IPV +FCEAT EEVE+AL+KD  LP  +  P            +   +NT++I T    T  S   + +     +     +V +A DA+D L+R+AT DPF R  G I G + S H  L +   +WG AM DL V K+ EIEK+CPSGHYPTPVLW+       GKE+++  V+RR+++ LR+ R
Sbjct:   41 LNEAKHILVEAGTAELSDIIPVHVFCEATYEEVEKALIKDVRLPQLISSPK---------GGKNVDNNTSSITTTDAVTTRSRKRAASRKKGKQICRSALVYRALDAVDSLVRDATFDPFHRQHGRIIGTNHS-HKLLLSLCEEWGPAMADLVVLKKEEIEKFCPSGHYPTPVLWK------EGKEVTIGAVVRRMVEVLRETR 228
The following BLAST results are available for this feature:
BLAST of NO24G01650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24364.12.900e-2841.67putative domain XH [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01650NO24G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01650.1NO24G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01650.1.cds1NO24G01650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01650.1.cds2NO24G01650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01650.1.cds3NO24G01650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01650.1.cds4NO24G01650.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01650.1 ID=NO24G01650.1|Name=NO24G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp
ATGGCAGCGCCTATTCTTGAGGGTGGAGGGGGAGAGGGAGACCAGGGAGA
AGGAGGGAAGCGAGGAGGAGGGAGGCGGAAATATGAGGCAGGGGAAAAGA
GAAAGAGGAAGCGAAGGAGGGCGTCAACTGCTCTTGAGAATGATGCATGG
AGGTCGACGACCGACGGGGGAAAGGGAGGAGAGGGAGGGGAGGGTGGGAG
GGAGGACGACTCGAGAGTAGGGCGGCGCATGGATGAGAGATTGAGGGAAC
AGCAACGTCAGCACGAGGTTGAGATTGAGACATTGAAGGAGAAGGAGTTG
GTTGAGGCCACGATGAGGATCAAGGAGCTGCTGAAGGAGGTGGAAAGTCG
TGACCAAGAGGTGAAGCACAGCGAATCAATGTTCAACATCATGACACTGA
AACACAATGCATTGAACTCAGTCATGAACGAAGCCAAAAGCGAGCTGATT
AAGGCAGCCCGGGATTATCTCCCCGATCTGATCCCTGTCCGTATTTTTTG
CGAGGCCACGGAGGAAGAGGTAGAGGAGGCCCTTCTCAAAGACGGATGCC
TCCCTCCCCCTCTCCCTCCCCCCTCCCTTCCTCTTTCTGTTCCTCCCCTT
TCCGCCACAAGGACCAGCACCAGCAACACCGCTAACATTTATACCGCCGG
CAACAGCACCGCCTGGAGTAGCAGCAGCAGCAACACCACTACCACCACCA
TCGAGGAGAGAGCCCGTAATGTCGTGGAACAGGCGGGTGATGCGCTAGAC
GATCTCCTTCGCAACGCTACCGTAGATCCCTTCATCCGTCACCAGGGGGA
GATAACCGGCGTCGATATCTCCCTCCATCCCTCCCTCCACGCCTTCTCTC
GGAAATGGGGTCGCGCCATGACTGATTTGTACGTCGAAAAAAGAAGAGAA
ATCGAGAAGTACTGTCCGTCGGGGCATTATCCCACCCCAGTGCTGTGGGA
AGGAGGGAAGGAGGGAGCGGGAGGGAAGGAGATCTCATTGCCCGAGGTGT
TGAGAAGGATATTGCAGGCTTTAAGGAAGGAGAGGGAGGGGAGCAGAGAA
GGGGAGGGAGGGAGGGAGGGACGTGGGGGTGGGGTGGCGGGGGAGGAGGA
GGGAGGCGTAGGGGGCTTACAAGGGAAAGAGAAGGAGGAAGGGGAGGAGA
AGAGAGAAGTGGAGAAAGAGAAGAATAGAGAGGAAGAGGTAGTGGTGCTG
GAGGGAGAGAAGATGGAGGAGGAGAAGAAGAAGAAAGAGGAGGAGGATAA
GGAGAAGATGGGCCAGGGCAGGGAAAGAGGAGAATATAGGGAGGCGTCCG
GATCACCACCTCTTTGACATGTAGAAAGTGTAGAATTACTCATGGTAGTG
TCCATATTTTAGATTGATTTTGTCGCCGAATAATTTGTCGAGTAAACAAG
AAGACGACGAGATGGACGAGTGGAGAGAGGGAGAGAGTGAAGATGATGAT
AGTCAGAAGCGGGACAGAATCTCTCCATCGAAAAGACGGACGACGACGAC
GACGATTACAGCCGAAGGAAAAG
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protein sequence of NO24G01650.1

>NO24G01650.1-protein ID=NO24G01650.1-protein|Name=NO24G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MAAPILEGGGGEGDQGEGGKRGGGRRKYEAGEKRKRKRRRASTALENDAW
RSTTDGGKGGEGGEGGREDDSRVGRRMDERLREQQRQHEVEIETLKEKEL
VEATMRIKELLKEVESRDQEVKHSESMFNIMTLKHNALNSVMNEAKSELI
KAARDYLPDLIPVRIFCEATEEEVEEALLKDGCLPPPLPPPSLPLSVPPL
SATRTSTSNTANIYTAGNSTAWSSSSSNTTTTTIEERARNVVEQAGDALD
DLLRNATVDPFIRHQGEITGVDISLHPSLHAFSRKWGRAMTDLYVEKRRE
IEKYCPSGHYPTPVLWEGGKEGAGGKEISLPEVLRRILQALRKEREGSRE
GEGGREGRGGGVAGEEEGGVGGLQGKEKEEGEEKREVEKEKNREEEVVVL
EGEKMEEEKKKKEEEDKEKMGQGRERGEYREASGSPPL*
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mRNA from alignment at chr24:438450..440615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01650.1 ID=NO24G01650.1|Name=NO24G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp|location=Sequence derived from alignment at chr24:438450..440615+ (Nannochloropsis oceanica)
ATGGCAGCGCCTATTCTTGAGGGTGGAGGGGGAGAGGGAGACCAGGGAGA
AGGAGGGAAGCGAGGAGGAGGGAGGCGGAAATATGAGGCAGGGGAAAAGA
GAAAGAGGAAGCGAAGGAGGGCGTCAACTGCTCTTGAGAATGATGCATGG
AGGTCGACGACCGACGGGGGAAAGGGAGGAGAGGGAGGGGAGGGTGGGAG
GGAGGACGACTCGAGAGTAGGGCGGCGCATGGATGAGAGATTGAGGGAAC
AGCAACGTCAGCACGAGGTTGAGATTGAGACATTGAAGGTAGGGGAGGGA
GGGAGGCAGTGAGGGAGGTAGAGAAGGAGGGAGGGAGGGAAGGAGGACGA
CAGATTTAGGTAAATCGCACGTTCTCGCGGTGGGTGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAAAGACAGAGGGCGGGAATGACCGCTCCCTCACG
TATTACACGTCATACCACCTGCACAGAGCGAACACGACGAGGAGCTTGCA
AGGATGGAACGAATCATCCGTACCTCTTTATTAGCCCCCACCATCAAGCA
AAGCCCTGCATCCTCCCTTCCTGACTGCCCCCTCCCTTTATCCCTCCCAT
CCTCCCTCCAAAGGAGAAGGAGTTGGTTGAGGCCACGATGAGGATCAAGG
AGCTGCTGAAGGAGGTGGAAAGTCGTGACCAAGAGGTGAAGCACAGCGAA
TCAATGTTCAACATCATGACACTGAAACACAATGCATTGAACTCAGGTGA
GCGAGGGGTGGAGGGAGGGAGGGAGGGGGAGGTCGTGGGGTTGTAGAAGG
AGGTGGAGCACCTGCATAATAATAATAATGAAGTATTATGAGCGTGCCCT
CCGAGCACGTCGAGCTCAATCGGACGAGGGGGAGGGGGAGGATAACGAGG
AGTCATGGCGGCAATTTCATTAGATTACCGTATCTTTCAGTCCCTAGAAC
ACCAACCACAAATGCTCCATCCCTTCGCTCCCCCTCCCCTCTTTTCCAGT
CATGAACGAAGCCAAAAGCGAGCTGATTAAGGCAGCCCGGGATTATCTCC
CCGATCTGATCCCTGTCCGTATTTTTTGCGAGGCCACGGAGGAAGAGGTA
GAGGAGGCCCTTCTCAAAGACGGATGCCTCCCTCCCCCTCTCCCTCCCCC
CTCCCTTCCTCTTTCTGTTCCTCCCCTTTCCGCCACGTTGGAAGCTATGG
AATCCGAAGTAGCAGCGCAAGGTTAATTGCTCGACAAAATACGCACGCCA
GAAGGACCAGCACCAGCAACACCGCTAACATTTATACCGCCGGCAACAGC
ACCGCCTGGAGTAGCAGCAGCAGCAACACCACTACCACCACCATCGAGGA
GAGAGCCCGTAATGTCGTGGAACAGGCGGGTGATGCGCTAGACGATCTCC
TTCGCAACGCTACCGTAGATCCCTTCATCCGTCACCAGGGGGAGATAACC
GGCGTCGATATCTCCCTCCATCCCTCCCTCCACGCCTTCTCTCGGAAATG
GGGTCGCGCCATGACTGATTTGTACGTCGAAAAAAGAAGAGAAATCGAGA
AGTACTGTCCGTCGGGGCATTATCCCACCCCAGTGCTGTGGGAAGGAGGG
AAGGAGGGAGCGGGAGGGAAGGAGATCTCATTGCCCGAGGTGTTGAGAAG
GATATTGCAGGCTTTAAGGAAGGAGAGGGAGGGGAGCAGAGAAGGGGAGG
GAGGGAGGGAGGGACGTGGGGGTGGGGTGGCGGGGGAGGAGGAGGGAGGC
GTAGGGGGCTTACAAGGGAAAGAGAAGGAGGAAGGGGAGGAGAAGAGAGA
AGTGGAGAAAGAGAAGAATAGAGAGGAAGAGGTAGTGGTGCTGGAGGGAG
AGAAGATGGAGGAGGAGAAGAAGAAGAAAGAGGAGGAGGATAAGGAGAAG
ATGGGCCAGGGCAGGGAAAGAGGAGAATATAGGGAGGCGTCCGGATCACC
ACCTCTTTGACATGTAGAAAGTGTAGAATTACTCATGGTAGTGTCCATAT
TTTAGATTGATTTTGTCGCCGAATAATTTGTCGAGTAAACAAGAAGACGA
CGAGATGGACGAGTGGAGAGAGGGAGAGAGTGAAGATGATGATAGTCAGA
AGCGGGACAGAATCTCTCCATCGAAAAGACGGACGACGACGACGACGATT
ACAGCCGAAGGAAAAG
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Coding sequence (CDS) from alignment at chr24:438450..440615+

>NO24G01650.1 ID=NO24G01650.1|Name=NO24G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=1317bp|location=Sequence derived from alignment at chr24:438450..440615+ (Nannochloropsis oceanica)
ATGGCAGCGCCTATTCTTGAGGGTGGAGGGGGAGAGGGAGACCAGGGAGA
AGGAGGGAAGCGAGGAGGAGGGAGGCGGAAATATGAGGCAGGGGAAAAGA
GAAAGAGGAAGCGAAGGAGGGCGTCAACTGCTCTTGAGAATGATGCATGG
AGGTCGACGACCGACGGGGGAAAGGGAGGAGAGGGAGGGGAGGGTGGGAG
GGAGGACGACTCGAGAGTAGGGCGGCGCATGGATGAGAGATTGAGGGAAC
AGCAACGTCAGCACGAGGTTGAGATTGAGACATTGAAGGAGAAGGAGTTG
GTTGAGGCCACGATGAGGATCAAGGAGCTGCTGAAGGAGGTGGAAAGTCG
TGACCAAGAGGTGAAGCACAGCGAATCAATGTTCAACATCATGACACTGA
AACACAATGCATTGAACTCAGTCATGAACGAAGCCAAAAGCGAGCTGATT
AAGGCAGCCCGGGATTATCTCCCCGATCTGATCCCTGTCCGTATTTTTTG
CGAGGCCACGGAGGAAGAGGTAGAGGAGGCCCTTCTCAAAGACGGATGCC
TCCCTCCCCCTCTCCCTCCCCCCTCCCTTCCTCTTTCTGTTCCTCCCCTT
TCCGCCACAAGGACCAGCACCAGCAACACCGCTAACATTTATACCGCCGG
CAACAGCACCGCCTGGAGTAGCAGCAGCAGCAACACCACTACCACCACCA
TCGAGGAGAGAGCCCGTAATGTCGTGGAACAGGCGGGTGATGCGCTAGAC
GATCTCCTTCGCAACGCTACCGTAGATCCCTTCATCCGTCACCAGGGGGA
GATAACCGGCGTCGATATCTCCCTCCATCCCTCCCTCCACGCCTTCTCTC
GGAAATGGGGTCGCGCCATGACTGATTTGTACGTCGAAAAAAGAAGAGAA
ATCGAGAAGTACTGTCCGTCGGGGCATTATCCCACCCCAGTGCTGTGGGA
AGGAGGGAAGGAGGGAGCGGGAGGGAAGGAGATCTCATTGCCCGAGGTGT
TGAGAAGGATATTGCAGGCTTTAAGGAAGGAGAGGGAGGGGAGCAGAGAA
GGGGAGGGAGGGAGGGAGGGACGTGGGGGTGGGGTGGCGGGGGAGGAGGA
GGGAGGCGTAGGGGGCTTACAAGGGAAAGAGAAGGAGGAAGGGGAGGAGA
AGAGAGAAGTGGAGAAAGAGAAGAATAGAGAGGAAGAGGTAGTGGTGCTG
GAGGGAGAGAAGATGGAGGAGGAGAAGAAGAAGAAAGAGGAGGAGGATAA
GGAGAAGATGGGCCAGGGCAGGGAAAGAGGAGAATATAGGGAGGCGTCCG
GATCACCACCTCTTTGA
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Synonyms
Publications