NO24G01630, NO24G01630 (gene) Nannochloropsis oceanica

Overview
NameNO24G01630
Unique NameNO24G01630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length237
Alignment locationchr24:434452..434688 +

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Properties
Property NameValue
DescriptionGlucosamine--fructose-6-phosphate aminotransferase (Isomerizing)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:434452..434688 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0097367carbohydrate derivative binding
GO:0004360glutamine-fructose-6-phosphate transaminase (isomerizing) activity
GO:0016740transferase activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:1901135carbohydrate derivative metabolic process
GO:1901137carbohydrate derivative biosynthetic process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR001347SIS
IPR005855GlmS_trans
Homology
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: GAX15853.1 (glucosamine--fructose-6-phosphate aminotransferase [Fistulifera solaris])

HSP 1 Score: 120.6 bits (301), Expect = 2.300e-24
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEVKARGA +I+ITD  +LAR L  DPIIIP+NGPLTAL A LPLQL++YELA+LRGINPD PRNLAKAVTVD
Sbjct:  606 MRTAAEEVKARGAQVIIITDKAELARDLDDDPIIIPNNGPLTALGAVLPLQLISYELAMLRGINPDTPRNLAKAVTVD 683
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: EJK73891.1 (hypothetical protein THAOC_04467 [Thalassiosira oceanica])

HSP 1 Score: 118.2 bits (295), Expect = 1.100e-23
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEVKARGAD+IVITD   LA G+  +PI+IPSNGP+TAL A +P+QL+AYELA++RGINPD PRNLAKAVTVD
Sbjct:  641 MRTAAEEVKARGADVIVITDKVALADGIDSNPIVIPSNGPMTALGAVMPIQLIAYELAMMRGINPDTPRNLAKAVTVD 718
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BLAST of NO24G01630 vs. NCBI_GenBank
Match: CBN79399.1 (glutamine-fructose-6-phosphate transaminase [Ectocarpus siliculosus])

HSP 1 Score: 117.9 bits (294), Expect = 1.500e-23
Identity = 58/78 (74.36%), Postives = 66/78 (84.62%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRT  EEVKARGA L VITDNP+LA GL P+PI+IP+NG LTALIA LPLQ +AYEL++ +GINPD PRNLAKAVT D
Sbjct:  584 MRTCGEEVKARGAQLTVITDNPRLADGLDPNPIVIPNNGALTALIAVLPLQFIAYELSLAKGINPDTPRNLAKAVTTD 661
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BLAST of NO24G01630 vs. NCBI_GenBank
Match: PIQ67671.1 (glutamine--fructose-6-phosphate transaminase (isomerizing) [Candidatus Uhrbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_41_9] >PIZ53097.1 glutamine--fructose-6-phosphate transaminase (isomerizing) [Candidatus Uhrbacteria bacterium CG_4_10_14_0_2_um_filter_41_7] >PJA46607.1 glutamine--fructose-6-phosphate transaminase (isomerizing) [Candidatus Uhrbacteria bacterium CG_4_9_14_3_um_filter_41_35])

HSP 1 Score: 115.5 bits (288), Expect = 7.300e-23
Identity = 56/78 (71.79%), Postives = 69/78 (88.46%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEV+ARGA  IVITD  +LA G+  D I+IP++GP+TAL++ +P+QL+AYELA+LRGINPDKPRNLAKAVTVD
Sbjct:  531 MRTAAEEVRARGAYTIVITDKKELAEGVADDVIVIPNDGPMTALLSVVPMQLIAYELAVLRGINPDKPRNLAKAVTVD 608
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: CEO96988.1 (hypothetical protein PBRA_005592 [Plasmodiophora brassicae])

HSP 1 Score: 114.0 bits (284), Expect = 2.100e-22
Identity = 56/78 (71.79%), Postives = 67/78 (85.90%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEV+ARGA  I++TDNP LA  +  + I IPSNGPLTAL++ +PLQ+LAYELAI RGI+PDKP+NLAKAVTVD
Sbjct:  576 MRTAAEEVRARGAYTIIVTDNPSLAADVADEAIFIPSNGPLTALLSVVPLQVLAYELAIARGIDPDKPKNLAKAVTVD 653
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: XP_009826205.1 (glutamine-fructose-6-phosphate transaminase (isomerizing) [Aphanomyces astaci] >ETV84513.1 glutamine-fructose-6-phosphate transaminase (isomerizing) [Aphanomyces astaci])

HSP 1 Score: 111.7 bits (278), Expect = 1.100e-21
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            M+TAAEEV+ARGA  IVITDNP +  G+    I IP+NGP+TAL+A++PLQL+AYELA+ RGINPD PRNLAKAVTVD
Sbjct:  621 MKTAAEEVRARGAYTIVITDNPAMCEGIADSIIPIPNNGPMTALLASIPLQLIAYELAVKRGINPDVPRNLAKAVTVD 698
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: XP_008870885.1 (glutamine-fructose-6-phosphate transaminase (isomerizing) [Aphanomyces invadans] >ETW00750.1 glutamine-fructose-6-phosphate transaminase (isomerizing) [Aphanomyces invadans])

HSP 1 Score: 111.3 bits (277), Expect = 1.400e-21
Identity = 55/78 (70.51%), Postives = 67/78 (85.90%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            M+TAAEEV+ARGA  IVITDNP + +G+    I IP+NGP+TAL+A++PLQL+AYELA+ RGINPD PRNLAKAVTVD
Sbjct:  622 MKTAAEEVRARGAYTIVITDNPAMCQGIADAIIPIPNNGPMTALLASIPLQLIAYELAVKRGINPDVPRNLAKAVTVD 699
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: CEP00617.1 (hypothetical protein PBRA_001671 [Plasmodiophora brassicae])

HSP 1 Score: 111.3 bits (277), Expect = 1.400e-21
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEV+ARGA  I++TDN K+A  +  D I+IP NGPLTAL+  +PLQ LAYELA+ RGI+PDKP+NLAKAVTVD
Sbjct:  574 MRTAAEEVRARGAHTIIVTDNEKIAEHIADDVILIPENGPLTALLGVVPLQQLAYELAVQRGIDPDKPKNLAKAVTVD 651
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: XP_009038596.1 (hypothetical protein AURANDRAFT_28862 [Aureococcus anophagefferens] >EGB06851.1 hypothetical protein AURANDRAFT_28862 [Aureococcus anophagefferens])

HSP 1 Score: 110.9 bits (276), Expect = 1.800e-21
Identity = 57/78 (73.08%), Postives = 66/78 (84.62%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            MRTAAEEVKAR AD+IVITD+  LA G+  DPI+IP NG LTAL A LPLQ +AYELA+LRG+NPD PR+LAK+VTVD
Sbjct:  579 MRTAAEEVKARHADVIVITDDAALAHGVDADPIVIPRNGKLTALGAVLPLQFIAYELALLRGVNPDFPRHLAKSVTVD 656
[Close]
BLAST of NO24G01630 vs. NCBI_GenBank
Match: XP_008603862.1 (glutamine-fructose-6-phosphate transaminase (isomerizing) [Saprolegnia diclina VS20] >EQC42439.1 glutamine-fructose-6-phosphate transaminase (isomerizing) [Saprolegnia diclina VS20])

HSP 1 Score: 110.5 bits (275), Expect = 2.300e-21
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 0 
Query:    1 MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPLQLLAYELAILRGINPDKPRNLAKAVTVD 79
            M+TAAEEV+ARGA  I+ITDNP +  GL    I IP+NGP+TAL+A++PLQL+AYELA+ RGINPD PRNLAKAVTVD
Sbjct:  611 MKTAAEEVRARGAYTIIITDNPAMCDGLADAVIPIPNNGPMTALLASVPLQLIAYELAVKRGINPDVPRNLAKAVTVD 688
The following BLAST results are available for this feature:
BLAST of NO24G01630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX15853.12.300e-2479.49glucosamine--fructose-6-phosphate aminotransferase... [more]
EJK73891.11.100e-2375.64hypothetical protein THAOC_04467 [Thalassiosira oc... [more]
CBN79399.11.500e-2374.36glutamine-fructose-6-phosphate transaminase [Ectoc... [more]
PIQ67671.17.300e-2371.79glutamine--fructose-6-phosphate transaminase (isom... [more]
CEO96988.12.100e-2271.79hypothetical protein PBRA_005592 [Plasmodiophora b... [more]
XP_009826205.11.100e-2170.51glutamine-fructose-6-phosphate transaminase (isome... [more]
XP_008870885.11.400e-2170.51glutamine-fructose-6-phosphate transaminase (isome... [more]
CEP00617.11.400e-2169.23hypothetical protein PBRA_001671 [Plasmodiophora b... [more]
XP_009038596.11.800e-2173.08hypothetical protein AURANDRAFT_28862 [Aureococcus... [more]
XP_008603862.12.300e-2170.51glutamine-fructose-6-phosphate transaminase (isome... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01630.1NO24G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01630.1NO24G01630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01630 ID=NO24G01630|Name=NO24G01630|organism=Nannochloropsis oceanica|type=gene|length=237bp
ATGCGCACCGCTGCAGAGGAAGTCAAGGCCCGTGGAGCCGATTTGATTGT
TATCACGGACAACCCGAAATTGGCGCGTGGCTTGGTCCCTGACCCTATCA
TCATTCCGAGTAACGGCCCCTTAACGGCGCTGATTGCAACCCTGCCGTTG
CAGCTGTTAGCGTACGAACTGGCGATCTTGCGCGGAATTAATCCAGATAA
GCCCAGGAACCTGGCCAAGGCCGTGACAGTCGACTGA
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protein sequence of NO24G01630.1

>NO24G01630.1-protein ID=NO24G01630.1-protein|Name=NO24G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MRTAAEEVKARGADLIVITDNPKLARGLVPDPIIIPSNGPLTALIATLPL
QLLAYELAILRGINPDKPRNLAKAVTVD*
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Synonyms
Publications