NO24G01610, NO24G01610 (gene) Nannochloropsis oceanica

Overview
NameNO24G01610
Unique NameNO24G01610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2162
Alignment locationchr24:429703..431864 +

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Properties
Property NameValue
DescriptionGlutaredoxin type i
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:429703..431864 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0019725cellular homeostasis
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR002109Glutaredoxin
IPR014025Glutaredoxin_subgr
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
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BLAST of NO24G01610 vs. NCBI_GenBank
Match: XP_005855450.1 (glutaredoxin type i [Nannochloropsis gaditana CCMP526] >EKU20909.1 glutaredoxin type i [Nannochloropsis gaditana CCMP526] >EWM24375.1 glutaredoxin type i [Nannochloropsis gaditana])

HSP 1 Score: 196.1 bits (497), Expect = 1.400e-46
Identity = 91/120 (75.83%), Postives = 105/120 (87.50%), Query Frame = 0 
Query:  137 QVSIAANCPAGLKCAGNSKEQTLLVEGITNNACFVVSKSYCPFCMRAKQALKAAGADCEIIELDQRTDGQALQRTLAEMSGRRTVPSVFIGGKSIGGSDDTLALHEKGELKRLLTAAKDL 257
            Q+++A  CP+GL C+GNSKE+  LV+GIT+NACFVVSKSYCPFCMRAK  L + GADCEIIELDQR DG ALQR LA+M+GRRTVP+VFIGGKSIGG+DDTL LH KGELKRLL +AKDL
Sbjct:   17 QLAVATKCPSGLTCSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSAKDL 136
[Close]
BLAST of NO24G01610 vs. NCBI_GenBank
Match: XP_024385482.1 (glutaredoxin-like [Physcomitrella patens] >PNR48648.1 hypothetical protein PHYPA_013125 [Physcomitrella patens])

HSP 1 Score: 113.2 bits (282), Expect = 1.200e-21
Identity = 51/90 (56.67%), Postives = 69/90 (76.67%), Query Frame = 0 
Query:  164 ITNNACFVVSKSYCPFCMRAKQALKAAGADCEIIELDQRTDGQALQRTLAEMSGRRTVPSVFIGGKSIGGSDDTLALHEKGELKRLLTAA 254
            I+ NA  V SKSYCPFC+R K  LK+ GA+ +++ELD+ +DG  +Q  LA++SG+RTVP+VFIGG+ IGG DDT A+H+KG+L  LL  A
Sbjct:   10 ISQNAVVVFSKSYCPFCLRVKSLLKSIGAEMKVVELDEESDGSDIQAALAKLSGQRTVPNVFIGGQHIGGRDDTTAMHKKGQLLPLLNGA 99
[Close]
BLAST of NO24G01610 vs. NCBI_GenBank
Match: PIA36988.1 (hypothetical protein AQUCO_03100021v1 [Aquilegia coerulea])

HSP 1 Score: 106.7 bits (265), Expect = 1.100e-19
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 0 
Query:  153 NSKEQTLLVEGITNNACFVVSKSYCPFCMRAKQALKAAGADCEIIELDQRTDGQALQRTLAEMSGRRTVPSVFIGGKSIGGSDDTLALHEKGELKRLLTAAKD 256
            +S E   + + +++N   + SKSYCP+C RAK   K       IIELD+R DG ++Q  L+E+ GRRTVP VF+ GK IGGSDDT+  +E GEL +LL  AK+
Sbjct:   44 SSAESAFVKKTVSSNKIVIFSKSYCPYCKRAKAVFKELNQSPHIIELDERDDGYSVQDALSEIVGRRTVPQVFVNGKHIGGSDDTVEAYESGELAKLLGVAKE 146
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BLAST of NO24G01610 vs. NCBI_GenBank
Match: PIA36985.1 (hypothetical protein AQUCO_03100021v1 [Aquilegia coerulea] >PIA36987.1 hypothetical protein AQUCO_03100021v1 [Aquilegia coerulea])

HSP 1 Score: 106.7 bits (265), Expect = 1.100e-19
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 0 
Query:  153 NSKEQTLLVEGITNNACFVVSKSYCPFCMRAKQALKAAGADCEIIELDQRTDGQALQRTLAEMSGRRTVPSVFIGGKSIGGSDDTLALHEKGELKRLLTAAKD 256
            +S E   + + +++N   + SKSYCP+C RAK   K       IIELD+R DG ++Q  L+E+ GRRTVP VF+ GK IGGSDDT+  +E GEL +LL  AK+
Sbjct:   66 SSAESAFVKKTVSSNKIVIFSKSYCPYCKRAKAVFKELNQSPHIIELDERDDGYSVQDALSEIVGRRTVPQVFVNGKHIGGSDDTVEAYESGELAKLLGVAKE 168
[Close]
BLAST of NO24G01610 vs. NCBI_GenBank
Match: XP_010535822.1 (PREDICTED: glutaredoxin-C4 [Tarenaya hassleriana])

HSP 1 Score: 106.3 bits (264), Expect = 1.400e-19
Identity = 50/106 (47.17%), Postives = 70/106 (66.04%), Query Frame = 0 
Query:  151 AGNSKEQTLLVEGITNNACFVVSKSYCPFCMRAKQALKAAGADCEIIELDQRTDGQALQRTLAEMSGRRTVPSVFIGGKSIGGSDDTLALHEKGELKRLLTAAKDL 257
            + +S E   + + I+++   + SKSYCP+C RAK   K       ++ELD+R DG ++Q  +AEM GRRTVP VFI GK IGGSDDT+  +E GEL +LL  A+D+
Sbjct:   24 SASSPEAAFVQKTISSHKIVIFSKSYCPYCRRAKSVFKELHQVPHVVELDEREDGSSIQSAVAEMVGRRTVPQVFINGKHIGGSDDTVEAYENGELAKLLGVAEDI 129
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BLAST of NO24G01610 vs. NCBI_GenBank
Match: XP_008453540.1 (PREDICTED: glutaredoxin-C4-like [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.900e-19
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 0 
Query:  150 CAGNSKEQTLLVEGITNNACFVVSKSYCPFCMRAKQALKAAGADCEIIELDQRTDGQALQRTLAEMSGRRTVPSVFIGGKSIGGSDDTLALHEKGELKRLLTAAKD 256
            C  +S  ++ +   I ++   + SKSYCP+C RAK   K       ++ELDQR DG ALQ  L+ + GRRTVP VFI GK IGGSDDT+  +E GEL +LL   +D
Sbjct:   27 CRASSSPESFIKNAIASHQIVIFSKSYCPYCRRAKAVFKELNKVPHVVELDQRDDGSALQNALSVLFGRRTVPQVFIDGKHIGGSDDTVEAYESGELSKLLGIKED 132
[Close]
BLAST of NO24G01610 vs. NCBI_GenBank
Match: XP_004146344.1 (PREDICTED: glutaredoxin-C4-like [Cucumis sativus] >KGN65502.1 hypothetical protein Csa_1G427520 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 2.500e-19
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 0 
Query:  150 CAGNSKEQTLLVEGITNNACFVVSKSYCPFCMRAKQALKAAGADCEIIELDQRTDGQALQRTLAEMSGRRTVPSVFIGGKSIGGSDDTLALHEKGELKRLLTAAKD 256
            C  +S  ++ +   I ++   + SKSYCP+C RAK   K       ++ELDQR DG +LQ  L+ + GRRTVP VFI GK IGGSDDTL  +E GEL++LL   +D
Sbjct:   27 CGASSSPESFIKNTIASHQIVIFSKSYCPYCRRAKAVFKELHKVPHVVELDQRDDGSSLQNALSVLFGRRTVPQVFIDGKHIGGSDDTLEAYESGELRKLLGIKED 132
[Close]
BLAST of NO24G01610 vs. NCBI_GenBank
Match: AAL90750.1 (glutaredoxin [Populus tremula x Populus tremuloides])

HSP 1 Score: 104.8 bits (260), Expect = 4.200e-19
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 0 
Query:  146 AGLKCAGNSKEQTLLVEGITNNACFVVSKSYCPFCMRAKQALKAAGADCEIIELDQRTDGQALQRTLAEMSGRRTVPSVFIGGKSIGGSDDTLALHEKGELKRLLTAAKD 256
            A L  A  S E T + + I+++   + SKSYCP+C +AK   K       ++ELDQR DG  +Q  ++E+ GRRTVP VFI GK IGGSDDT+  +E GEL +LL  A +
Sbjct:   22 ASLTWAAGSPEATFVKKTISSHQIVIFSKSYCPYCKKAKGVFKELNQTPHVVELDQREDGHDIQDAMSEIVGRRTVPQVFIDGKHIGGSDDTVEAYESGELAKLLGVASE 131
[Close]
BLAST of NO24G01610 vs. NCBI_GenBank
Match: XP_002325236.1 (glutaredoxin-C4 [Populus trichocarpa] >ABK93676.1 unknown [Populus trichocarpa] >ABK96111.1 unknown [Populus trichocarpa] >PNS94223.1 hypothetical protein POPTR_018G133400v3 [Populus trichocarpa])

HSP 1 Score: 104.8 bits (260), Expect = 4.200e-19
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 0 
Query:  146 AGLKCAGNSKEQTLLVEGITNNACFVVSKSYCPFCMRAKQALKAAGADCEIIELDQRTDGQALQRTLAEMSGRRTVPSVFIGGKSIGGSDDTLALHEKGELKRLLTAAKD 256
            A L  A  S E T + + I+++   + SKSYCP+C +AK   K       ++ELDQR DG  +Q  ++E+ GRRTVP VFI GK IGGSDDT+  +E GEL +LL  A +
Sbjct:   22 ASLTWAAGSPEATFVKKTISSHQIVIFSKSYCPYCKKAKGVFKELNQTPHVVELDQREDGHDIQDAMSEIVGRRTVPQVFIDGKHIGGSDDTVEAYESGELAKLLGVASE 131
[Close]
BLAST of NO24G01610 vs. NCBI_GenBank
Match: XP_012483825.1 (PREDICTED: glutaredoxin-like [Gossypium raimondii] >KJB33810.1 hypothetical protein B456_006G031800 [Gossypium raimondii] >KJB33811.1 hypothetical protein B456_006G031800 [Gossypium raimondii])

HSP 1 Score: 104.8 bits (260), Expect = 4.200e-19
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 0 
Query:  164 ITNNACFVVSKSYCPFCMRAKQALKAAGADCEIIELDQRTDGQALQRTLAEMSGRRTVPSVFIGGKSIGGSDDTLALHEKGELKRLLTAA 254
            ++ N   V SKSYCPFC+  KQ L+  GA  + IELD+ +DG  +Q  LAE +G+RTVP+VFIGGK IGG D T+ALH++G+L  LLT A
Sbjct:   10 VSTNPVVVFSKSYCPFCVDVKQLLQQLGASFKAIELDKESDGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEA 99
The following BLAST results are available for this feature:
BLAST of NO24G01610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855450.11.400e-4675.83glutaredoxin type i [Nannochloropsis gaditana CCMP... [more]
XP_024385482.11.200e-2156.67glutaredoxin-like [Physcomitrella patens] >PNR4864... [more]
PIA36988.11.100e-1948.54hypothetical protein AQUCO_03100021v1 [Aquilegia c... [more]
PIA36985.11.100e-1948.54hypothetical protein AQUCO_03100021v1 [Aquilegia c... [more]
XP_010535822.11.400e-1947.17PREDICTED: glutaredoxin-C4 [Tarenaya hassleriana][more]
XP_008453540.11.900e-1947.17PREDICTED: glutaredoxin-C4-like [Cucumis melo][more]
XP_004146344.12.500e-1947.17PREDICTED: glutaredoxin-C4-like [Cucumis sativus] ... [more]
AAL90750.14.200e-1946.36glutaredoxin [Populus tremula x Populus tremuloide... [more]
XP_002325236.14.200e-1946.36glutaredoxin-C4 [Populus trichocarpa] >ABK93676.1 ... [more]
XP_012483825.14.200e-1955.56PREDICTED: glutaredoxin-like [Gossypium raimondii]... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002831NSK002831Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01610.1NO24G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G01610.2NO24G01610.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598560gene_7386Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100246g3gene6111Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01610.1NO24G01610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G01610.2NO24G01610.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01610 ID=NO24G01610|Name=NO24G01610|organism=Nannochloropsis oceanica|type=gene|length=2162bp
ACTAAGAGCACGTTGTTGCTTACGTACAAGGAAGTAATTGCCTTCGCTAC
CGTCTCGAGAGAGAGGGCCGTGGAAAGGAGAGCCCCTCCTTGATTCGTAA
AGAAAAAGAACAGAGTGGGGAAACCTTATAGATAGCAAAATCACATTAGA
AAGGAAATATTTGAATATTCTCGCGTTCATTTCTTGCAATAGTTCGTCGA
TGGTGCGTTTTACGGGAGAAAAAGGAGCGGATAAGATTTGCCCAGGGATT
ATTTTGAATTTGAGAGAAAACAGCGAATCGTCTGCAGCACTCTCTGCAGT
TGTGTGCCACCACACACGCACAGATAAGCACACACAGACGGCTCTACGTC
GAGATGCGACAGTCCCTATTCCAGATGTTTCTCACTATCCCGTTCTCTGC
CACACACTCTGCCAGAAGAAAGCCCCTCGCCAACAATGAAGTTCTTCACC
GCTGCCTCCCTCATCCTCGTCGCCGCCCTTGCGCAGgtaagaccacttga
gcccgggtgccatgcatggatgcctgtgtcataagactgtgccaggtggt
acccggggaagggaaggacggctcgactagctgtgtattgtagggtgcgc
gtcgtcgatcaagacgacgacatcgtcacgttgattgtttttcgtgcttc
tccttcccctccaagTTGTCCGCTCAGAGAAAAGGCAATTTCGTACGAAA
ACCAACCAGCTTCTATCTGTCCTCAGATGTGTCCTAGCTGGACTAGGGGC
GGCATGTGGGATGATTGCTTTATCACGGTGCCCAGATAAGCCTGCCTTCT
CCGCCTATGCAAACCTTTCGAATTTCCCTACCACCACACCTGCAGTGTGC
TGTCTCTATCTCTTTTTCACCATCTCTGAAGTTCTTCTCACGTCACCCAC
GCACCGTCACTCACTTAAACATACCATAATGCCATACGCGCAGGTGAGCA
TCGCCGCCAACTGTCCGGCGGGTCTCAAATGCGCCGGCAATgtgagtatt
tcaggagagagagggggagggagggagagaggagggtaggagaggggcat
gtttgtgattatgtatgtgcgtgattgtcttgtgtgtggtaggaagatgg
tgtgaacagatgtgcttgtgtaacggggaatgcctgcatgtttgtctcat
tcacccggtcggtcttattttttctctccttgttaattgatgttatgagt
ctttcttatttgttccttcgtatgcatcgatctacacaccgacactaaca
ccgagatacacttaaaacagTCCAAGGAGCAGACCCTGCTGGTGGAGGGC
ATTACCAATAATGCCTGCTTCGTCGTCAGCAAGTCCTACTGgtacgtatg
catacatgcatatatatctatacatgtatatgtgtatatttacttgttta
tgaacacgatcaccacgaagtaaacaaaaaccgattcgtctaccccttct
tcaaatccccacatcaaaagCCCTTTCTGCATGCGCGCCAAGCAAGCCCT
CAAGGCTGCAGGTGCCGACTGCGAGATCATCGAACTCGACCAGCGTACAG
ATGGCCAGGCTCTGCAACGGACTCTAGCCGAGATGAGCGGCCGACGCACG
GTGCCAAGTGTCTTCATTGGTGGGAAGAGCATCGGTGGGTCGGATGACAC
Ggtacgtcatatttttaaaatgcatattcatttacttgaatattggatat
ttttttgatttatttcaataaatattaaaaaagtgtcccagtcgactcat
cttttctacttccccctttcctccttctctaccttattccctgacactcc
tatgaccactacgtcaacagCTTGCCTTGCACGAGAAGGGAGAACTCAAG
CGCCTCCTCACTGCGGCCAAAGACCTTTAATCTCACATACTAAGCGATGA
GTGAAGAGAAAAGCAAGAGGGAGAATTAGAAGCAAAATATTAATGTGTAA
TATCTATTTTTTCGTATTTCAACGGTTGGAATGGGAGAGAGATACGCAGA
AGGACAGGATTATAAAGATTATAAAGATAAAGTGCTTAGTATTCTAGCAG
ACGGCTGGAGATGGCACGGATCGATCGAGTCGGTCAGAGCGATGACGATC
TCTCGCAGGGGTGAGCAGGAAAGCTGGAAATTAAAAATCATATGAGAAAT
CGACAGTAGTAT
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protein sequence of NO24G01610.1

>NO24G01610.1-protein ID=NO24G01610.1-protein|Name=NO24G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MKFFTAASLILVAALAQVSIAANCPAGLKCAGNSKEQTLLVEGITNNACF
VVSKSYCPFCMRAKQALKAAGADCEIIELDQRTDGQALQRTLAEMSGRRT
VPSVFIGGKSIGGSDDTLALHEKGELKRLLTAAKDL*
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protein sequence of NO24G01610.2

>NO24G01610.2-protein ID=NO24G01610.2-protein|Name=NO24G01610.2|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MRQSLFQMFLTIPFSATHSARRKPLANNEVLHRCLPHPRRRPCAVVRSEK
RQFRTKTNQLLSVLRCVLAGLGAACGMIALSRCPDKPAFSAYANLSNFPT
TTPAVCCLYLFFTISEVLLTSPTHRHSLKHTIMPYAQVSIAANCPAGLKC
AGNSKEQTLLVEGITNNACFVVSKSYCPFCMRAKQALKAAGADCEIIELD
QRTDGQALQRTLAEMSGRRTVPSVFIGGKSIGGSDDTLALHEKGELKRLL
TAAKDL*
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Synonyms
Publications