NO24G01610.2, NO24G01610.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01610.2
Unique NameNO24G01610.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1406
Alignment locationchr24:429703..431864 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:429703..431864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01610.2 vs.
Match: XP_005855450.1 (glutaredoxin type i [Nannochloropsis gaditana CCMP526]; EKU20909.1 glutaredoxin type i [Nannochloropsis gaditana CCMP526]; EWM24375.1 glutaredoxin type i [Nannochloropsis gaditana])

HSP 1 Score: 196.1 bits (497), Expect = 1.400e-46
Identity = 91/120 (75.83%), Postives = 105/120 (87.50%), Query Frame = 0 
Query:  137 QVSIAANCPAGLKCAGNSKEQTLLVEGITNNACFVVSKSYCPFCMRAKQALKAAGADCEIIELDQRTDGQALQRTLAEMSGRRTVPSVFIGGKSIGGSDDTLALHEKGELKRLLTAAKDL 257
            Q+++A  CP+GL C+GNSKE+  LV+GIT+NACFVVSKSYCPFCMRAK  L + GADCEIIELDQR DG ALQR LA+M+GRRTVP+VFIGGKSIGG+DDTL LH KGELKRLL +AKDL
Sbjct:   17 QLAVATKCPSGLTCSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSAKDL 136
The following BLAST results are available for this feature:
BLAST of NO24G01610.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855450.11.400e-4675.83glutaredoxin type i [Nannochloropsis gaditana CCMP... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01610NO24G01610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01610.2NO24G01610.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01610.2.cds1NO24G01610.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01610.2.cds2NO24G01610.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01610.2.cds3NO24G01610.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01610.2.cds4NO24G01610.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01610.2.cds5NO24G01610.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01610.2 ID=NO24G01610.2|Name=NO24G01610.2|organism=Nannochloropsis oceanica|type=mRNA|length=1406bp
ACTAAGAGCACGTTGTTGCTTACGTACAAGGAAGTAATTGCCTTCGCTAC
CGTCTCGAGAGAGAGGGCCGTGGAAAGGAGAGCCCCTCCTTGATTCGTAA
AGAAAAAGAACAGAGTGGGGAAACCTTATAGATAGCAAAATCACATTAGA
AAGGAAATATTTGAATATTCTCGCGTTCATTTCTTGCAATAGTTCGTCGA
TGGTGCGTTTTACGGGAGAAAAAGGAGCGGATAAGATTTGCCCAGGGATT
ATTTTGAATTTGAGAGAAAACAGCGAATCGTCTGCAGCACTCTCTGCAGT
TGTGTGCCACCACACACGCACAGATAAGCACACACAGACGGCTCTACGTC
GAGATGCGACAGTCCCTATTCCAGATGTTTCTCACTATCCCGTTCTCTGC
CACACACTCTGCCAGAAGAAAGCCCCTCGCCAACAATGAAGTTCTTCACC
GCTGCCTCCCTCATCCTCGTCGCCGCCCTTGCGCAGTTGTCCGCTCAGAG
AAAAGGCAATTTCGTACGAAAACCAACCAGCTTCTATCTGTCCTCAGATG
TGTCCTAGCTGGACTAGGGGCGGCATGTGGGATGATTGCTTTATCACGGT
GCCCAGATAAGCCTGCCTTCTCCGCCTATGCAAACCTTTCGAATTTCCCT
ACCACCACACCTGCAGTGTGCTGTCTCTATCTCTTTTTCACCATCTCTGA
AGTTCTTCTCACGTCACCCACGCACCGTCACTCACTTAAACATACCATAA
TGCCATACGCGCAGGTGAGCATCGCCGCCAACTGTCCGGCGGGTCTCAAA
TGCGCCGGCAATTCCAAGGAGCAGACCCTGCTGGTGGAGGGCATTACCAA
TAATGCCTGCTTCGTCGTCAGCAAGTCCTACTGCCCTTTCTGCATGCGCG
CCAAGCAAGCCCTCAAGGCTGCAGGTGCCGACTGCGAGATCATCGAACTC
GACCAGCGTACAGATGGCCAGGCTCTGCAACGGACTCTAGCCGAGATGAG
CGGCCGACGCACGGTGCCAAGTGTCTTCATTGGTGGGAAGAGCATCGGTG
GGTCGGATGACACGCTTGCCTTGCACGAGAAGGGAGAACTCAAGCGCCTC
CTCACTGCGGCCAAAGACCTTTAATCTCACATACTAAGCGATGAGTGAAG
AGAAAAGCAAGAGGGAGAATTAGAAGCAAAATATTAATGTGTAATATCTA
TTTTTTCGTATTTCAACGGTTGGAATGGGAGAGAGATACGCAGAAGGACA
GGATTATAAAGATTATAAAGATAAAGTGCTTAGTATTCTAGCAGACGGCT
GGAGATGGCACGGATCGATCGAGTCGGTCAGAGCGATGACGATCTCTCGC
AGGGGTGAGCAGGAAAGCTGGAAATTAAAAATCATATGAGAAATCGACAG
TAGTAT
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protein sequence of NO24G01610.2

>NO24G01610.2-protein ID=NO24G01610.2-protein|Name=NO24G01610.2|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MRQSLFQMFLTIPFSATHSARRKPLANNEVLHRCLPHPRRRPCAVVRSEK
RQFRTKTNQLLSVLRCVLAGLGAACGMIALSRCPDKPAFSAYANLSNFPT
TTPAVCCLYLFFTISEVLLTSPTHRHSLKHTIMPYAQVSIAANCPAGLKC
AGNSKEQTLLVEGITNNACFVVSKSYCPFCMRAKQALKAAGADCEIIELD
QRTDGQALQRTLAEMSGRRTVPSVFIGGKSIGGSDDTLALHEKGELKRLL
TAAKDL*
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mRNA from alignment at chr24:429703..431864+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01610.2 ID=NO24G01610.2|Name=NO24G01610.2|organism=Nannochloropsis oceanica|type=mRNA|length=2162bp|location=Sequence derived from alignment at chr24:429703..431864+ (Nannochloropsis oceanica)
ACTAAGAGCACGTTGTTGCTTACGTACAAGGAAGTAATTGCCTTCGCTAC
CGTCTCGAGAGAGAGGGCCGTGGAAAGGAGAGCCCCTCCTTGATTCGTAA
AGAAAAAGAACAGAGTGGGGAAACCTTATAGATAGCAAAATCACATTAGA
AAGGAAATATTTGAATATTCTCGCGTTCATTTCTTGCAATAGTTCGTCGA
TGGTGCGTTTTACGGGAGAAAAAGGAGCGGATAAGATTTGCCCAGGGATT
ATTTTGAATTTGAGAGAAAACAGCGAATCGTCTGCAGCACTCTCTGCAGT
TGTGTGCCACCACACACGCACAGATAAGCACACACAGACGGCTCTACGTC
GAGATGCGACAGTCCCTATTCCAGATGTTTCTCACTATCCCGTTCTCTGC
CACACACTCTGCCAGAAGAAAGCCCCTCGCCAACAATGAAGTTCTTCACC
GCTGCCTCCCTCATCCTCGTCGCCGCCCTTGCGCAGGTAAGACCACTTGA
GCCCGGGTGCCATGCATGGATGCCTGTGTCATAAGACTGTGCCAGGTGGT
ACCCGGGGAAGGGAAGGACGGCTCGACTAGCTGTGTATTGTAGGGTGCGC
GTCGTCGATCAAGACGACGACATCGTCACGTTGATTGTTTTTCGTGCTTC
TCCTTCCCCTCCAAGTTGTCCGCTCAGAGAAAAGGCAATTTCGTACGAAA
ACCAACCAGCTTCTATCTGTCCTCAGATGTGTCCTAGCTGGACTAGGGGC
GGCATGTGGGATGATTGCTTTATCACGGTGCCCAGATAAGCCTGCCTTCT
CCGCCTATGCAAACCTTTCGAATTTCCCTACCACCACACCTGCAGTGTGC
TGTCTCTATCTCTTTTTCACCATCTCTGAAGTTCTTCTCACGTCACCCAC
GCACCGTCACTCACTTAAACATACCATAATGCCATACGCGCAGGTGAGCA
TCGCCGCCAACTGTCCGGCGGGTCTCAAATGCGCCGGCAATGTGAGTATT
TCAGGAGAGAGAGGGGGAGGGAGGGAGAGAGGAGGGTAGGAGAGGGGCAT
GTTTGTGATTATGTATGTGCGTGATTGTCTTGTGTGTGGTAGGAAGATGG
TGTGAACAGATGTGCTTGTGTAACGGGGAATGCCTGCATGTTTGTCTCAT
TCACCCGGTCGGTCTTATTTTTTCTCTCCTTGTTAATTGATGTTATGAGT
CTTTCTTATTTGTTCCTTCGTATGCATCGATCTACACACCGACACTAACA
CCGAGATACACTTAAAACAGTCCAAGGAGCAGACCCTGCTGGTGGAGGGC
ATTACCAATAATGCCTGCTTCGTCGTCAGCAAGTCCTACTGGTACGTATG
CATACATGCATATATATCTATACATGTATATGTGTATATTTACTTGTTTA
TGAACACGATCACCACGAAGTAAACAAAAACCGATTCGTCTACCCCTTCT
TCAAATCCCCACATCAAAAGCCCTTTCTGCATGCGCGCCAAGCAAGCCCT
CAAGGCTGCAGGTGCCGACTGCGAGATCATCGAACTCGACCAGCGTACAG
ATGGCCAGGCTCTGCAACGGACTCTAGCCGAGATGAGCGGCCGACGCACG
GTGCCAAGTGTCTTCATTGGTGGGAAGAGCATCGGTGGGTCGGATGACAC
GGTACGTCATATTTTTAAAATGCATATTCATTTACTTGAATATTGGATAT
TTTTTTGATTTATTTCAATAAATATTAAAAAAGTGTCCCAGTCGACTCAT
CTTTTCTACTTCCCCCTTTCCTCCTTCTCTACCTTATTCCCTGACACTCC
TATGACCACTACGTCAACAGCTTGCCTTGCACGAGAAGGGAGAACTCAAG
CGCCTCCTCACTGCGGCCAAAGACCTTTAATCTCACATACTAAGCGATGA
GTGAAGAGAAAAGCAAGAGGGAGAATTAGAAGCAAAATATTAATGTGTAA
TATCTATTTTTTCGTATTTCAACGGTTGGAATGGGAGAGAGATACGCAGA
AGGACAGGATTATAAAGATTATAAAGATAAAGTGCTTAGTATTCTAGCAG
ACGGCTGGAGATGGCACGGATCGATCGAGTCGGTCAGAGCGATGACGATC
TCTCGCAGGGGTGAGCAGGAAAGCTGGAAATTAAAAATCATATGAGAAAT
CGACAGTAGTAT
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Coding sequence (CDS) from alignment at chr24:429703..431864+

>NO24G01610.2 ID=NO24G01610.2|Name=NO24G01610.2|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at chr24:429703..431864+ (Nannochloropsis oceanica)
ATGCGACAGTCCCTATTCCAGATGTTTCTCACTATCCCGTTCTCTGCCAC
ACACTCTGCCAGAAGAAAGCCCCTCGCCAACAATGAAGTTCTTCACCGCT
GCCTCCCTCATCCTCGTCGCCGCCCTTGCGCAGTTGTCCGCTCAGAGAAA
AGGCAATTTCGTACGAAAACCAACCAGCTTCTATCTGTCCTCAGATGTGT
CCTAGCTGGACTAGGGGCGGCATGTGGGATGATTGCTTTATCACGGTGCC
CAGATAAGCCTGCCTTCTCCGCCTATGCAAACCTTTCGAATTTCCCTACC
ACCACACCTGCAGTGTGCTGTCTCTATCTCTTTTTCACCATCTCTGAAGT
TCTTCTCACGTCACCCACGCACCGTCACTCACTTAAACATACCATAATGC
CATACGCGCAGGTGAGCATCGCCGCCAACTGTCCGGCGGGTCTCAAATGC
GCCGGCAATTCCAAGGAGCAGACCCTGCTGGTGGAGGGCATTACCAATAA
TGCCTGCTTCGTCGTCAGCAAGTCCTACTGCCCTTTCTGCATGCGCGCCA
AGCAAGCCCTCAAGGCTGCAGGTGCCGACTGCGAGATCATCGAACTCGAC
CAGCGTACAGATGGCCAGGCTCTGCAACGGACTCTAGCCGAGATGAGCGG
CCGACGCACGGTGCCAAGTGTCTTCATTGGTGGGAAGAGCATCGGTGGGT
CGGATGACACGCTTGCCTTGCACGAGAAGGGAGAACTCAAGCGCCTCCTC
ACTGCGGCCAAAGACCTTTAA
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Synonyms
Publications