NO24G01580, NO24G01580 (gene) Nannochloropsis oceanica

Overview
NameNO24G01580
Unique NameNO24G01580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2196
Alignment locationchr24:420649..422844 -

Link to JBrowse

Properties
Property NameValue
DescriptionWD40-repeat-containing domain protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:420649..422844 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO24G01580 vs. NCBI_GenBank
Match: EWM24356.1 (WD40-repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 521.2 bits (1341), Expect = 4.400e-144
Identity = 321/600 (53.50%), Postives = 393/600 (65.50%), Query Frame = 0 
Query:    1 MVDSLSHTLPFPPFSVDWVDAHNLIVTGGGGASKTGVPNGVLLYMVRGGVQRLVQRRFYQTGDELPYFSKALPALDLLAIAVGNRVQLLRLHDLKPLGKPVLELTPNPNVMDPTMVIAFFAPSTNAARTGGATGAGGVMSGPGNSSSGDEGRNYLAIGAHDGYIRVLELTFGQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVVASIGITPLATDKPFRDLAFHPSGRLVLGSCEDGTWRAFWVGQRRQHHHQQRLVELTPSFTLFAASNGALVGGDAAGATASAVSKDQQGSMLHYTSRCGQFSEDGKHLFTVHFVRRGPKNADKRPVLTKWAVNLTSGGEREGE-QAQVHVRVVKTVRLGGVSPIMCINLRGAVGVAGDCSGRTIIFQTSNLSWKSRDKMHNFGVTSLSLYPPLPPSFGPSPS-VEEEDVRIASTSGDKTLRLQYLHPSHGGMSGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSIVYDLPLERAVGHFFGGLYEVSAWEGLKEVARKGWKESLVKLGVSEQAKMRMEEGMRTRWREGWEVVEAVEGWVKAEVLPAVVPMIVKAKERVDGWRGEL 599
            MVDSLSHTLPFP F+VDWVDAHN+++TGGGGASKTGVPNGVLLY+VRGGV+RLVQRRFYQTGDELPYF+KALP+LDLLA+A+GNRV+LLRLH++ PL + VLEL P+PNVMDPTMVIAF+            TG  GV   P N    D     +A+GAHDG+IR+L++   +                               P V+ +GITP AT+KP+RD+AFHPSG  VLG+CEDG+WRAFWV +  +  HQ       P+FTL A S G + G  +  + A  V+KDQ+   + YT RCG+FSEDG+ LFTVH+VRRGPKN DKRPVLTKW + L  G E+ G  +A+V VRVV++V L GV PIMCI+LRG VGVAGDCSGRTIIFQT NLSWK+R+KMHNFGVTSLS YP  P +  P  S V EEDVRIASTSGDKTLRLQYL  S                     XXXXXXXXXXXXXXXXXXXXX  L++V+DLP +R    F  G+YE + W+    VA+                       M+   REG  V+   +G+V+ ++ P V  ++ +A+  + G   EL
Sbjct:    1 MVDSLSHTLPFPAFAVDWVDAHNIVITGGGGASKTGVPNGVLLYLVRGGVERLVQRRFYQTGDELPYFAKALPSLDLLAVAIGNRVELLRLHNIMPLTR-VLELAPDPNVMDPTMVIAFYQ----------GTGTTGV-DAPDNMPQ-DATNILMAVGAHDGHIRLLKIAPSE----------------TQQTEGVKSHESEGPPTVSQLGITPTATEKPYRDIAFHPSGCFVLGACEDGSWRAFWVCRGERQDHQG---ACPPAFTLVATSKGGMEG--STESAAGIVAKDQKQG-IFYTCRCGKFSEDGRFLFTVHYVRRGPKNTDKRPVLTKWGLELRRGEEQGGRGEARVSVRVVRSVCLAGVDPIMCIDLRGPVGVAGDCSGRTIIFQTRNLSWKAREKMHNFGVTSLSFYPAWPLAGPPHASTVREEDVRIASTSGDKTLRLQYLQASRQD----HKRMGWIRWSFSVLXXXXXXXXXXXXXXXXXXXXXVALALVWDLPPDRVFDQFLAGVYEPTVWQ--PAVAQ-----------------------MQVLCREGLAVLRVSQGYVQEKMGPWVSTLLNRARVAITGGVEEL 536
The following BLAST results are available for this feature:
BLAST of NO24G01580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24356.14.400e-14453.50WD40-repeat-containing domain protein [Nannochloro... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002836NSK002836Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01580.1NO24G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641095gene_7382Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100163g10gene6115Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01580.1NO24G01580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01580 ID=NO24G01580|Name=NO24G01580|organism=Nannochloropsis oceanica|type=gene|length=2196bp
GTCCGTTACCCATTCTTCCCCCCTCCCTTCTCTTCGTCTACGTCCTGCTT
ACATCTCTTGCCACACCACCCACAGCTGTTTCGTGCTCAATAAAAACTCT
TATGCTCTCCATCTCCTCTCAAACCAACACAGGTCTTCCAAGGTTCCGCG
AGCACAACCCAACATGGTGGACAGCCTGTCGCACACTCTGCCCTTTCCCC
CCTTCTCCGTGGATTGGGTCGATGCTCACAACCTGATCGTTACGGGCGGC
GGTGGGGCCAGCAAGACAGGAGTTCCTAATGGTGTTTTGCTTTACATGGT
CCGTGGAGGGGTGCAACGGCTGGTGCAACGCCGATTTTACCAGACTGGGG
ACGAACTCCCCTATTTCTCCAAAGCTCTCCCTGCCTTAGACCTGCTGGCT
ATCGCAGTAGGGAATCGAGTGCAGTTGCTGCGGTTGCATGATTTGAAGCC
GCTAGGAAAGCCAGTGTTGGAACTGACACCGAACCCTAATGTCATGGACC
CTACTATGGTGATTGCTTTTTTTGCTCCTTCCACGAATGCTGCCAGGACG
GGGGGAGCGACAGGGGCAGGAGGAGTCATGTCTGGGCCGGGAAACAGCAG
CAGCGGCGATGAAGGAAGAAATTATCTAGCTATCGGGGCTCATGATGGAT
ATATTCGTGTGCTGGAGCTAACGTTTGGTCAAGGGCCACCACAGCGGCTA
AGCAGTAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
AAGCAGCGGCGGCGGCGCCAGGACACCAGTGGTGGCGAGCATAGGGATCA
CGCCTTTGGCGACAGACAAGCCTTTCCGAGACCTTGCATTTCATCCGTCT
GGACGCTTGGTGCTGGGTTCGTGCGAGGATGGGACGTGGCGTGCGTTTTG
GGTGGGGCAAAGACGGCAGCACCACCACCAGCAGCGGCTGGTGGAGCTTA
CACCATCATTCACTCTCTTCGCAGCAAGCAACGGAGCTTTGGTAGGTGGA
GATGCAGCAGGAGCAACTGCTTCAGCAGTTTCAAAAGACCAACAAGGCAG
TATGCTGCACTACACGTCACGCTGTGGTCAGTTCTCAGAAGACGGAAAGC
ATCTTTTCACTGTTCACTTCGTTCGTAGAGGTCCCAAAAACGCAGACAAG
CGCCCAGTGCTCACAAAATGGGCTGTCAATCTCACCAGCGGGGGAGAGAG
GGAAGGAGAGCAGGCGCAAGTGCATGTGAGAGTGGTCAAGACCGTGAGGC
TAGGCGGGGTAAGCCCCATTATGTGCATTAATTTAAGGGGAGCAGTCGGA
GTAGCTGGGGACTGCAGTGGCCGAACGATCATCTTTCAGACGAGTAATCT
CTCCTGGAAATCTCGGGATAAAATGCATAATTTTGGGGTGACTTCTCTGT
CATTATATCCTCCCCTCCCCCCCTCCTTCGGGCCCTCCCCGTCTGTGGAA
GAGGAGGATGTGAGGATTGCTTCGACTAGCGGTGATAAAACATTGAGACT
ACAGTATCTGCATCCTTCTCATGGAGGAATGAGTGGGTGTAGCAGCAGTA
GTAGCAGCAGTAGTAGAGAGAGGGGCTGGTTCTTGTCCATTCTCTTCTTC
TTTTGGTGTCTGTTATTGCTACTGTTGCTGCTGGGAGGGGTGTTTGTCGT
ACTTTCGATTGTGTACGACCTTCCACTAGAGCGAGCGGTTGGCCATTTTT
TCGGTGGTCTTTACGAGGTCAGTGCTTGGGAAGGGTTGAAGGAGGTGGCG
AGGAAGGGATGGAAGGAGAGTTTGGTCAAGTTAGGGGTGTCGGAACAGGC
GAAGATGAGGATGGAGGAGGGGATGAGGACGAGATGGAGGGAGGGGTGGG
AGGTGGTGGAGGCGGTGGAAGGGTGGGTGAAGGCTGAGGTGTTGCCGGCG
GTGGTTCCAATGATTGTGAAAGCAAAGGAGAGGGTAGACGGGTGGAGGGG
GGAATTGTAGGAAGAAATACAATGATGGAAGGAGGGTGAACCCAGGAACA
GTAGATGAGAGTGGGAGACTTGATGGGCATTTGGCCTTTCCAAAGGGAGA
GCGCAGGTGGAAATGATAGAATAATAATTCAAAAAGAGGCGGATAAAGTT
CAGGTATGTAGAAATGAACAAATAAGGAACTATCCGGGGGCGGGGTCTCG
AAGCACTATAAAATAGGACGAGACAGAGATAGAACGATAGAGGAAA
back to top

protein sequence of NO24G01580.1

>NO24G01580.1-protein ID=NO24G01580.1-protein|Name=NO24G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=599bp
MVDSLSHTLPFPPFSVDWVDAHNLIVTGGGGASKTGVPNGVLLYMVRGGV
QRLVQRRFYQTGDELPYFSKALPALDLLAIAVGNRVQLLRLHDLKPLGKP
VLELTPNPNVMDPTMVIAFFAPSTNAARTGGATGAGGVMSGPGNSSSGDE
GRNYLAIGAHDGYIRVLELTFGQGPPQRLSSSSSSSSSSSSSSSSRSSGG
GARTPVVASIGITPLATDKPFRDLAFHPSGRLVLGSCEDGTWRAFWVGQR
RQHHHQQRLVELTPSFTLFAASNGALVGGDAAGATASAVSKDQQGSMLHY
TSRCGQFSEDGKHLFTVHFVRRGPKNADKRPVLTKWAVNLTSGGEREGEQ
AQVHVRVVKTVRLGGVSPIMCINLRGAVGVAGDCSGRTIIFQTSNLSWKS
RDKMHNFGVTSLSLYPPLPPSFGPSPSVEEEDVRIASTSGDKTLRLQYLH
PSHGGMSGCSSSSSSSSRERGWFLSILFFFWCLLLLLLLLGGVFVVLSIV
YDLPLERAVGHFFGGLYEVSAWEGLKEVARKGWKESLVKLGVSEQAKMRM
EEGMRTRWREGWEVVEAVEGWVKAEVLPAVVPMIVKAKERVDGWRGEL*
back to top
Synonyms
Publications