NO24G01580.1, NO24G01580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01580.1
Unique NameNO24G01580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2196
Alignment locationchr24:420649..422844 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:420649..422844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01580.1 vs.
Match: EWM24356.1 (WD40-repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 534.3 bits (1375), Expect = 5.000e-148
Identity = 316/607 (52.06%), Postives = 397/607 (65.40%), Query Frame = 0 
Query:    1 MVDSLSHTLPFPPFSVDWVDAHNLIVTGGGGASKTGVPNGVLLYMVRGGVQRLVQRRFYQTGDELPYFSKALPALDLLAIAVGNRVQLLRLHDLKPLGKPVLELTPNPNVMDPTMVIAFFAPSTNAARTGGATGAGGVMSGPGNSSSGDEGRNYLAIGAHDGYIRVLELTFGQGPPQRLSSSSSSSSSSSSSSSSRSSGGGARTPVVASIGITPLATDKPFRDLAFHPSGRLVLGSCEDGTWRAFWVGQRRQHHHQQRLVELTPSFTLFAASNGALVGGDAAGATASAVSKDQQGSMLHYTSRCGQFSEDGKHLFTVHFVRRGPKNADKRPVLTKWAVNLTSGGEREGE-QAQVHVRVVKTVRLGGVSPIMCINLRGAVGVAGDCSGRTIIFQTSNLSWKSRDKMHNFGVTSLSLYPPLPPSFGPSPS-VEEEDVRIASTSGDKTLRLQYLHPSHGGMSGCSSSSSSSSRERGW----FLSILFFF---WCLLLLLLLLGGVFVVLSIVYDLPLERAVGHFFGGLYEVSAWEGLKEVARKGWKESLVKLGVSEQAKMRMEEGMRTRWREGWEVVEAVEGWVKAEVLPAVVPMIVKAKERVDGWRGEL 599
            MVDSLSHTLPFP F+VDWVDAHN+++TGGGGASKTGVPNGVLLY+VRGGV+RLVQRRFYQTGDELPYF+KALP+LDLLA+A+GNRV+LLRLH++ PL + VLEL P+PNVMDPTMVIAF+            TG  GV   P N    D     +A+GAHDG+IR+L++            + S +  +    S  S G     P V+ +GITP AT+KP+RD+AFHPSG  VLG+CEDG+WRAFWV +  +  HQ       P+FTL A S G + G  +  + A  V+KDQ+   + YT RCG+FSEDG+ LFTVH+VRRGPKN DKRPVLTKW + L  G E+ G  +A+V VRVV++V L GV PIMCI+LRG VGVAGDCSGRTIIFQT NLSWK+R+KMHNFGVTSLS YP  P +  P  S V EEDVRIASTSGDKTLRLQYL            +S    +  GW    F  +L+ F     LLL +L+L G+ V L++V+DLP +R    F  G+YE + W+    VA+                       M+   REG  V+   +G+V+ ++ P V  ++ +A+  + G   EL
Sbjct:    1 MVDSLSHTLPFPAFAVDWVDAHNIVITGGGGASKTGVPNGVLLYLVRGGVERLVQRRFYQTGDELPYFAKALPSLDLLAVAIGNRVELLRLHNIMPLTR-VLELAPDPNVMDPTMVIAFYQ----------GTGTTGV-DAPDNMPQ-DATNILMAVGAHDGHIRLLKI------------APSETQQTEGVKSHESEG----PPTVSQLGITPTATEKPYRDIAFHPSGCFVLGACEDGSWRAFWVCRGERQDHQG---ACPPAFTLVATSKGGMEG--STESAAGIVAKDQKQG-IFYTCRCGKFSEDGRFLFTVHYVRRGPKNTDKRPVLTKWGLELRRGEEQGGRGEARVSVRVVRSVCLAGVDPIMCIDLRGPVGVAGDCSGRTIIFQTRNLSWKAREKMHNFGVTSLSFYPAWPLAGPPHASTVREEDVRIASTSGDKTLRLQYL-----------QASRQDHKRMGWIRWSFSVLLWLFSTVMYLLLFVLVLLGLMVALALVWDLPPDRVFDQFLAGVYEPTVWQ--PAVAQ-----------------------MQVLCREGLAVLRVSQGYVQEKMGPWVSTLLNRARVAITGGVEEL 536
The following BLAST results are available for this feature:
BLAST of NO24G01580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24356.15.000e-14852.06WD40-repeat-containing domain protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01580NO24G01580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01580.1NO24G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01580.1.cds1NO24G01580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01580.1 ID=NO24G01580.1|Name=NO24G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp
GTCCGTTACCCATTCTTCCCCCCTCCCTTCTCTTCGTCTACGTCCTGCTT
ACATCTCTTGCCACACCACCCACAGCTGTTTCGTGCTCAATAAAAACTCT
TATGCTCTCCATCTCCTCTCAAACCAACACAGGTCTTCCAAGGTTCCGCG
AGCACAACCCAACATGGTGGACAGCCTGTCGCACACTCTGCCCTTTCCCC
CCTTCTCCGTGGATTGGGTCGATGCTCACAACCTGATCGTTACGGGCGGC
GGTGGGGCCAGCAAGACAGGAGTTCCTAATGGTGTTTTGCTTTACATGGT
CCGTGGAGGGGTGCAACGGCTGGTGCAACGCCGATTTTACCAGACTGGGG
ACGAACTCCCCTATTTCTCCAAAGCTCTCCCTGCCTTAGACCTGCTGGCT
ATCGCAGTAGGGAATCGAGTGCAGTTGCTGCGGTTGCATGATTTGAAGCC
GCTAGGAAAGCCAGTGTTGGAACTGACACCGAACCCTAATGTCATGGACC
CTACTATGGTGATTGCTTTTTTTGCTCCTTCCACGAATGCTGCCAGGACG
GGGGGAGCGACAGGGGCAGGAGGAGTCATGTCTGGGCCGGGAAACAGCAG
CAGCGGCGATGAAGGAAGAAATTATCTAGCTATCGGGGCTCATGATGGAT
ATATTCGTGTGCTGGAGCTAACGTTTGGTCAAGGGCCACCACAGCGGCTA
AGCAGTAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
AAGCAGCGGCGGCGGCGCCAGGACACCAGTGGTGGCGAGCATAGGGATCA
CGCCTTTGGCGACAGACAAGCCTTTCCGAGACCTTGCATTTCATCCGTCT
GGACGCTTGGTGCTGGGTTCGTGCGAGGATGGGACGTGGCGTGCGTTTTG
GGTGGGGCAAAGACGGCAGCACCACCACCAGCAGCGGCTGGTGGAGCTTA
CACCATCATTCACTCTCTTCGCAGCAAGCAACGGAGCTTTGGTAGGTGGA
GATGCAGCAGGAGCAACTGCTTCAGCAGTTTCAAAAGACCAACAAGGCAG
TATGCTGCACTACACGTCACGCTGTGGTCAGTTCTCAGAAGACGGAAAGC
ATCTTTTCACTGTTCACTTCGTTCGTAGAGGTCCCAAAAACGCAGACAAG
CGCCCAGTGCTCACAAAATGGGCTGTCAATCTCACCAGCGGGGGAGAGAG
GGAAGGAGAGCAGGCGCAAGTGCATGTGAGAGTGGTCAAGACCGTGAGGC
TAGGCGGGGTAAGCCCCATTATGTGCATTAATTTAAGGGGAGCAGTCGGA
GTAGCTGGGGACTGCAGTGGCCGAACGATCATCTTTCAGACGAGTAATCT
CTCCTGGAAATCTCGGGATAAAATGCATAATTTTGGGGTGACTTCTCTGT
CATTATATCCTCCCCTCCCCCCCTCCTTCGGGCCCTCCCCGTCTGTGGAA
GAGGAGGATGTGAGGATTGCTTCGACTAGCGGTGATAAAACATTGAGACT
ACAGTATCTGCATCCTTCTCATGGAGGAATGAGTGGGTGTAGCAGCAGTA
GTAGCAGCAGTAGTAGAGAGAGGGGCTGGTTCTTGTCCATTCTCTTCTTC
TTTTGGTGTCTGTTATTGCTACTGTTGCTGCTGGGAGGGGTGTTTGTCGT
ACTTTCGATTGTGTACGACCTTCCACTAGAGCGAGCGGTTGGCCATTTTT
TCGGTGGTCTTTACGAGGTCAGTGCTTGGGAAGGGTTGAAGGAGGTGGCG
AGGAAGGGATGGAAGGAGAGTTTGGTCAAGTTAGGGGTGTCGGAACAGGC
GAAGATGAGGATGGAGGAGGGGATGAGGACGAGATGGAGGGAGGGGTGGG
AGGTGGTGGAGGCGGTGGAAGGGTGGGTGAAGGCTGAGGTGTTGCCGGCG
GTGGTTCCAATGATTGTGAAAGCAAAGGAGAGGGTAGACGGGTGGAGGGG
GGAATTGTAGGAAGAAATACAATGATGGAAGGAGGGTGAACCCAGGAACA
GTAGATGAGAGTGGGAGACTTGATGGGCATTTGGCCTTTCCAAAGGGAGA
GCGCAGGTGGAAATGATAGAATAATAATTCAAAAAGAGGCGGATAAAGTT
CAGGTATGTAGAAATGAACAAATAAGGAACTATCCGGGGGCGGGGTCTCG
AAGCACTATAAAATAGGACGAGACAGAGATAGAACGATAGAGGAAA
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protein sequence of NO24G01580.1

>NO24G01580.1-protein ID=NO24G01580.1-protein|Name=NO24G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=599bp
MVDSLSHTLPFPPFSVDWVDAHNLIVTGGGGASKTGVPNGVLLYMVRGGV
QRLVQRRFYQTGDELPYFSKALPALDLLAIAVGNRVQLLRLHDLKPLGKP
VLELTPNPNVMDPTMVIAFFAPSTNAARTGGATGAGGVMSGPGNSSSGDE
GRNYLAIGAHDGYIRVLELTFGQGPPQRLSSSSSSSSSSSSSSSSRSSGG
GARTPVVASIGITPLATDKPFRDLAFHPSGRLVLGSCEDGTWRAFWVGQR
RQHHHQQRLVELTPSFTLFAASNGALVGGDAAGATASAVSKDQQGSMLHY
TSRCGQFSEDGKHLFTVHFVRRGPKNADKRPVLTKWAVNLTSGGEREGEQ
AQVHVRVVKTVRLGGVSPIMCINLRGAVGVAGDCSGRTIIFQTSNLSWKS
RDKMHNFGVTSLSLYPPLPPSFGPSPSVEEEDVRIASTSGDKTLRLQYLH
PSHGGMSGCSSSSSSSSRERGWFLSILFFFWCLLLLLLLLGGVFVVLSIV
YDLPLERAVGHFFGGLYEVSAWEGLKEVARKGWKESLVKLGVSEQAKMRM
EEGMRTRWREGWEVVEAVEGWVKAEVLPAVVPMIVKAKERVDGWRGEL*
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mRNA from alignment at chr24:420649..422844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01580.1 ID=NO24G01580.1|Name=NO24G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp|location=Sequence derived from alignment at chr24:420649..422844- (Nannochloropsis oceanica)
GTCCGTTACCCATTCTTCCCCCCTCCCTTCTCTTCGTCTACGTCCTGCTT
ACATCTCTTGCCACACCACCCACAGCTGTTTCGTGCTCAATAAAAACTCT
TATGCTCTCCATCTCCTCTCAAACCAACACAGGTCTTCCAAGGTTCCGCG
AGCACAACCCAACATGGTGGACAGCCTGTCGCACACTCTGCCCTTTCCCC
CCTTCTCCGTGGATTGGGTCGATGCTCACAACCTGATCGTTACGGGCGGC
GGTGGGGCCAGCAAGACAGGAGTTCCTAATGGTGTTTTGCTTTACATGGT
CCGTGGAGGGGTGCAACGGCTGGTGCAACGCCGATTTTACCAGACTGGGG
ACGAACTCCCCTATTTCTCCAAAGCTCTCCCTGCCTTAGACCTGCTGGCT
ATCGCAGTAGGGAATCGAGTGCAGTTGCTGCGGTTGCATGATTTGAAGCC
GCTAGGAAAGCCAGTGTTGGAACTGACACCGAACCCTAATGTCATGGACC
CTACTATGGTGATTGCTTTTTTTGCTCCTTCCACGAATGCTGCCAGGACG
GGGGGAGCGACAGGGGCAGGAGGAGTCATGTCTGGGCCGGGAAACAGCAG
CAGCGGCGATGAAGGAAGAAATTATCTAGCTATCGGGGCTCATGATGGAT
ATATTCGTGTGCTGGAGCTAACGTTTGGTCAAGGGCCACCACAGCGGCTA
AGCAGTAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
AAGCAGCGGCGGCGGCGCCAGGACACCAGTGGTGGCGAGCATAGGGATCA
CGCCTTTGGCGACAGACAAGCCTTTCCGAGACCTTGCATTTCATCCGTCT
GGACGCTTGGTGCTGGGTTCGTGCGAGGATGGGACGTGGCGTGCGTTTTG
GGTGGGGCAAAGACGGCAGCACCACCACCAGCAGCGGCTGGTGGAGCTTA
CACCATCATTCACTCTCTTCGCAGCAAGCAACGGAGCTTTGGTAGGTGGA
GATGCAGCAGGAGCAACTGCTTCAGCAGTTTCAAAAGACCAACAAGGCAG
TATGCTGCACTACACGTCACGCTGTGGTCAGTTCTCAGAAGACGGAAAGC
ATCTTTTCACTGTTCACTTCGTTCGTAGAGGTCCCAAAAACGCAGACAAG
CGCCCAGTGCTCACAAAATGGGCTGTCAATCTCACCAGCGGGGGAGAGAG
GGAAGGAGAGCAGGCGCAAGTGCATGTGAGAGTGGTCAAGACCGTGAGGC
TAGGCGGGGTAAGCCCCATTATGTGCATTAATTTAAGGGGAGCAGTCGGA
GTAGCTGGGGACTGCAGTGGCCGAACGATCATCTTTCAGACGAGTAATCT
CTCCTGGAAATCTCGGGATAAAATGCATAATTTTGGGGTGACTTCTCTGT
CATTATATCCTCCCCTCCCCCCCTCCTTCGGGCCCTCCCCGTCTGTGGAA
GAGGAGGATGTGAGGATTGCTTCGACTAGCGGTGATAAAACATTGAGACT
ACAGTATCTGCATCCTTCTCATGGAGGAATGAGTGGGTGTAGCAGCAGTA
GTAGCAGCAGTAGTAGAGAGAGGGGCTGGTTCTTGTCCATTCTCTTCTTC
TTTTGGTGTCTGTTATTGCTACTGTTGCTGCTGGGAGGGGTGTTTGTCGT
ACTTTCGATTGTGTACGACCTTCCACTAGAGCGAGCGGTTGGCCATTTTT
TCGGTGGTCTTTACGAGGTCAGTGCTTGGGAAGGGTTGAAGGAGGTGGCG
AGGAAGGGATGGAAGGAGAGTTTGGTCAAGTTAGGGGTGTCGGAACAGGC
GAAGATGAGGATGGAGGAGGGGATGAGGACGAGATGGAGGGAGGGGTGGG
AGGTGGTGGAGGCGGTGGAAGGGTGGGTGAAGGCTGAGGTGTTGCCGGCG
GTGGTTCCAATGATTGTGAAAGCAAAGGAGAGGGTAGACGGGTGGAGGGG
GGAATTGTAGGAAGAAATACAATGATGGAAGGAGGGTGAACCCAGGAACA
GTAGATGAGAGTGGGAGACTTGATGGGCATTTGGCCTTTCCAAAGGGAGA
GCGCAGGTGGAAATGATAGAATAATAATTCAAAAAGAGGCGGATAAAGTT
CAGGTATGTAGAAATGAACAAATAAGGAACTATCCGGGGGCGGGGTCTCG
AAGCACTATAAAATAGGACGAGACAGAGATAGAACGATAGAGGAAA
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Coding sequence (CDS) from alignment at chr24:420649..422844-

>NO24G01580.1 ID=NO24G01580.1|Name=NO24G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=1797bp|location=Sequence derived from alignment at chr24:420649..422844- (Nannochloropsis oceanica)
ATGGTGGACAGCCTGTCGCACACTCTGCCCTTTCCCCCCTTCTCCGTGGA
TTGGGTCGATGCTCACAACCTGATCGTTACGGGCGGCGGTGGGGCCAGCA
AGACAGGAGTTCCTAATGGTGTTTTGCTTTACATGGTCCGTGGAGGGGTG
CAACGGCTGGTGCAACGCCGATTTTACCAGACTGGGGACGAACTCCCCTA
TTTCTCCAAAGCTCTCCCTGCCTTAGACCTGCTGGCTATCGCAGTAGGGA
ATCGAGTGCAGTTGCTGCGGTTGCATGATTTGAAGCCGCTAGGAAAGCCA
GTGTTGGAACTGACACCGAACCCTAATGTCATGGACCCTACTATGGTGAT
TGCTTTTTTTGCTCCTTCCACGAATGCTGCCAGGACGGGGGGAGCGACAG
GGGCAGGAGGAGTCATGTCTGGGCCGGGAAACAGCAGCAGCGGCGATGAA
GGAAGAAATTATCTAGCTATCGGGGCTCATGATGGATATATTCGTGTGCT
GGAGCTAACGTTTGGTCAAGGGCCACCACAGCGGCTAAGCAGTAGCAGCA
GTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCGGCGGC
GGCGCCAGGACACCAGTGGTGGCGAGCATAGGGATCACGCCTTTGGCGAC
AGACAAGCCTTTCCGAGACCTTGCATTTCATCCGTCTGGACGCTTGGTGC
TGGGTTCGTGCGAGGATGGGACGTGGCGTGCGTTTTGGGTGGGGCAAAGA
CGGCAGCACCACCACCAGCAGCGGCTGGTGGAGCTTACACCATCATTCAC
TCTCTTCGCAGCAAGCAACGGAGCTTTGGTAGGTGGAGATGCAGCAGGAG
CAACTGCTTCAGCAGTTTCAAAAGACCAACAAGGCAGTATGCTGCACTAC
ACGTCACGCTGTGGTCAGTTCTCAGAAGACGGAAAGCATCTTTTCACTGT
TCACTTCGTTCGTAGAGGTCCCAAAAACGCAGACAAGCGCCCAGTGCTCA
CAAAATGGGCTGTCAATCTCACCAGCGGGGGAGAGAGGGAAGGAGAGCAG
GCGCAAGTGCATGTGAGAGTGGTCAAGACCGTGAGGCTAGGCGGGGTAAG
CCCCATTATGTGCATTAATTTAAGGGGAGCAGTCGGAGTAGCTGGGGACT
GCAGTGGCCGAACGATCATCTTTCAGACGAGTAATCTCTCCTGGAAATCT
CGGGATAAAATGCATAATTTTGGGGTGACTTCTCTGTCATTATATCCTCC
CCTCCCCCCCTCCTTCGGGCCCTCCCCGTCTGTGGAAGAGGAGGATGTGA
GGATTGCTTCGACTAGCGGTGATAAAACATTGAGACTACAGTATCTGCAT
CCTTCTCATGGAGGAATGAGTGGGTGTAGCAGCAGTAGTAGCAGCAGTAG
TAGAGAGAGGGGCTGGTTCTTGTCCATTCTCTTCTTCTTTTGGTGTCTGT
TATTGCTACTGTTGCTGCTGGGAGGGGTGTTTGTCGTACTTTCGATTGTG
TACGACCTTCCACTAGAGCGAGCGGTTGGCCATTTTTTCGGTGGTCTTTA
CGAGGTCAGTGCTTGGGAAGGGTTGAAGGAGGTGGCGAGGAAGGGATGGA
AGGAGAGTTTGGTCAAGTTAGGGGTGTCGGAACAGGCGAAGATGAGGATG
GAGGAGGGGATGAGGACGAGATGGAGGGAGGGGTGGGAGGTGGTGGAGGC
GGTGGAAGGGTGGGTGAAGGCTGAGGTGTTGCCGGCGGTGGTTCCAATGA
TTGTGAAAGCAAAGGAGAGGGTAGACGGGTGGAGGGGGGAATTGTAG
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Synonyms
Publications