NO24G01560, NO24G01560 (gene) Nannochloropsis oceanica

Overview
NameNO24G01560
Unique NameNO24G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2116
Alignment locationchr24:413536..415651 +

Link to JBrowse

Properties
Property NameValue
Description15-cis-zeta-carotene isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:413536..415651 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009915NnrU_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO24G01560 vs. NCBI_GenBank
Match: OAY68878.1 (15-cis-zeta-carotene isomerase, chloroplastic, partial [Ananas comosus])

HSP 1 Score: 380.9 bits (977), Expect = 4.600e-102
Identity = 181/296 (61.15%), Postives = 222/296 (75.00%), Query Frame = 0
Query:   92 GGNLVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            GG L GED+A+FDL EQ L +W  F  +L  VL  L V WI+P+TG G  ++  ++ +   H  E V+ +L+ IF   HSG+AS R   E++IG RA+RV+FA +SLPLA S I+YFINHRYDG QLW ++ VPG HE VW+ SFISF FLYPSTFNLLE+AAV+KPKLHMW TGIMRITRHPQMVGQ +WC AHTLW+GNS  + AS  L+AHHLFGVWNGDRRL  +YG E  E  + +TSV+PFAAI  GRQ LP +Y+KEF RLPY+ IT+ T+GAY AHP MQ+ S+ LHW
Sbjct:   24 GGALRGEDSAAFDLGEQRLASWAYFAAILGAVLFGLNVVWIDPSTGFGTAFVGAVSSLSSSH--EVVMLILIIIFAAVHSGMASFRDAGEKLIGERAYRVLFAGISLPLAVSTIVYFINHRYDGTQLWQVQSVPGIHELVWVSSFISFYFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQVIWCLAHTLWIGNSVAVAASVGLIAHHLFGVWNGDRRLASRYG-EAFEVVKSRTSVIPFAAILDGRQRLPKNYYKEFIRLPYLTITILTLGAYFAHPLMQSSSYGLHW 316          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: XP_020111958.1 (15-cis-zeta-carotene isomerase, chloroplastic [Ananas comosus] >XP_020111959.1 15-cis-zeta-carotene isomerase, chloroplastic [Ananas comosus] >XP_020111960.1 15-cis-zeta-carotene isomerase, chloroplastic [Ananas comosus])

HSP 1 Score: 380.9 bits (977), Expect = 4.600e-102
Identity = 181/296 (61.15%), Postives = 222/296 (75.00%), Query Frame = 0
Query:   92 GGNLVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            GG L GED+A+FDL EQ L +W  F  +L  VL  L V WI+P+TG G  ++  ++ +   H  E V+ +L+ IF   HSG+AS R   E++IG RA+RV+FA +SLPLA S I+YFINHRYDG QLW ++ VPG HE VW+ SFISF FLYPSTFNLLE+AAV+KPKLHMW TGIMRITRHPQMVGQ +WC AHTLW+GNS  + AS  L+AHHLFGVWNGDRRL  +YG E  E  + +TSV+PFAAI  GRQ LP +Y+KEF RLPY+ IT+ T+GAY AHP MQ+ S+ LHW
Sbjct:   82 GGALRGEDSAAFDLGEQRLASWAYFAAILGAVLFGLNVVWIDPSTGFGTAFVGAVSSLSSSH--EVVMLILIIIFAAVHSGMASFRDAGEKLIGERAYRVLFAGISLPLAVSTIVYFINHRYDGTQLWQVQSVPGIHELVWVSSFISFYFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQVIWCLAHTLWIGNSVAVAASVGLIAHHLFGVWNGDRRLASRYG-EAFEVVKSRTSVIPFAAILDGRQRLPKNYYKEFIRLPYLTITILTLGAYFAHPLMQSSSYGLHW 374          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: XP_002986222.1 (15-cis-zeta-carotene isomerase, chloroplastic [Selaginella moellendorffii] >EFJ12753.1 hypothetical protein SELMODRAFT_157819 [Selaginella moellendorffii])

HSP 1 Score: 380.6 bits (976), Expect = 6.000e-102
Identity = 178/293 (60.75%), Postives = 225/293 (76.79%), Query Frame = 0
Query:   95 LVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            LVGED+A F+L+ Q L +W  FT +L  V   L+ AW++P TG G  Y+ +L+ +   +S E VI  +L IF + HSGLAS R   E++IG RA+RV+FA +SLPLA SA++YFINHRY+GAQLW ++ VPG H+ VW++SF SF FLYPSTFNLLE+AAV+KPKLHMW TGIMRITRHPQMVGQ +WC AHTLW+G+SF L  S  L+AHHLFGVWNGDRRL  +YGD   E  +++TSV+PF AI QGRQ LP D++KEF RLPY+IIT  T+GAY +HP ++ GS +LHW
Sbjct:   81 LVGEDSAVFELQSQKLSSWLYFTAILAAVTVVLYFAWLDPTTGYGTAYVDWLSTLT-NNSPELVITAMLAIFALVHSGLASFRDRGEQLIGERAYRVVFAGLSLPLAVSAVVYFINHRYEGAQLWHVQDVPGVHQLVWLLSFTSFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQFMWCFAHTLWIGSSFTLTTSIGLLAHHLFGVWNGDRRLSLRYGD-AFETVKQRTSVVPFVAIAQGRQKLPRDFYKEFLRLPYLIITALTLGAYFSHPLLRLGSSSLHW 371          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: AIU50063.1 (15-cis-zeta-carotene isomerase, partial [Chimonanthus praecox])

HSP 1 Score: 380.2 bits (975), Expect = 7.800e-102
Identity = 181/291 (62.20%), Postives = 221/291 (75.95%), Query Frame = 0
Query:   97 GEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            GED+A+FDL EQ L +W  FTL+L  VL AL + WI+P TG G  +I  ++ +    S E V+ +L+ IF   HSG+ASLR   E++IG RA+RV+FA +SLPLA S I+YFINHRY G QLWD+K VPG H+FVW+ SFISFL LYPSTFNLLE+AAV+KPK+H+W TG+MRITRHPQMVGQ +WC AHTLW+GNS V  AS  L+ HHLFGVWNGDRRL  +YG E  E  + +TSV+PFAAI  GRQ LP DY+KEF RLPY+ I + T+GAY AHP MQA S+ LHW
Sbjct:    2 GEDSAAFDLGEQKLSSWLYFTLILGAVLFALNLVWIDPKTGFGTAFIDTVSGL--SESDEIVMLILIAIFATVHSGMASLRDAGEKLIGERAYRVLFAGISLPLAVSTIVYFINHRYGGIQLWDVKSVPGVHQFVWLSSFISFLLLYPSTFNLLEVAAVDKPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWVGNSVVAAASLGLIGHHLFGVWNGDRRLASRYG-EAFEVVKNRTSVIPFAAILDGRQKLPKDYYKEFIRLPYLTIIVLTLGAYFAHPLMQASSFGLHW 289          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: AIU50090.1 (15-cis-zeta-carotene isomerase, partial [Houttuynia cordata])

HSP 1 Score: 380.2 bits (975), Expect = 7.800e-102
Identity = 183/292 (62.67%), Postives = 222/292 (76.03%), Query Frame = 0
Query:   96 VGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            VGED+A FDL +Q + +W  FT++L  VL AL V WI+ +TG G  +I  ++ I   H  E V+ VL  IF   HSGLASLR   E++IG RA+RV+FA  SLPLA S I+YFINHRYDG QLW ++ VPG H+FVW++SFISF FLYPSTFNLLE+AAV+KPKLH+W TGIMRITRHPQMVGQ +WC AHTLW+GN+ V+ AS  L+ HHLFGVWNGDRRL  +YG E  E  + +TS++PFAAI  GRQ LP DY+KEF RLPY+ IT  T+G YLAHP MQAGS+ LHW
Sbjct:    1 VGEDSAVFDLGQQKVSSWVYFTVILGAVLVALDVLWIDSSTGYGKAFIDAISGISDSH--EVVMLVLFLIFATVHSGLASLRDVGEKLIGERAYRVLFAGTSLPLAFSTIVYFINHRYDGTQLWQVQGVPGVHQFVWLMSFISFFFLYPSTFNLLEVAAVDKPKLHLWETGIMRITRHPQMVGQVMWCIAHTLWVGNTLVIAASLGLIGHHLFGVWNGDRRLASRYG-EAFEEVKSRTSIIPFAAILDGRQRLPDDYYKEFFRLPYLTITAMTLGIYLAHPLMQAGSFGLHW 289          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: ALQ56934.1 (15-cis-zeta-carotene-isomerase [Crocus ancyrensis])

HSP 1 Score: 379.8 bits (974), Expect = 1.000e-101
Identity = 179/294 (60.88%), Postives = 224/294 (76.19%), Query Frame = 0
Query:   94 NLVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            +LVGED+A F+L+EQ + +W  F+++L +VL AL   WINP+TG G  +I  L+ +    S E V+ +L+ IF + HSG+ASLR   E+ +G R +RV+FA +SLPLA S I+YFINHRYDG QLW L  +PG HE VW  SFISFLFLYPSTFNLLE+AAV+KPK+H+W TG+MRITRHPQMVGQ +WC AHTLW+GNS V  AS  L+ HHLFGVWNGDRRL+ +YG E  EA + +TSV+PFAAI  GRQ LP D++KEF RLPY+ IT  T+GAY AHP MQ+ S+ LHW
Sbjct:   70 SLVGEDSAVFELREQKVSSWIYFSVILGSVLFALDTFWINPSTGYGSAFIDSLSGV--SESKEVVMLILIFIFAITHSGMASLRDVGEKFVGERVYRVLFAGISLPLAVSTIVYFINHRYDGIQLWQLHSIPGVHELVWASSFISFLFLYPSTFNLLEVAAVDKPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVVAAASVGLIGHHLFGVWNGDRRLKARYG-ESFEALKSRTSVVPFAAILDGRQKLPKDFYKEFIRLPYLTITALTLGAYFAHPLMQSSSFGLHW 360          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: NP_001132720.1 (15-cis-zeta-carotene isomerase, chloroplastic [Zea mays] >B4FHU1.1 RecName: Full=15-cis-zeta-carotene isomerase, chloroplastic; Flags: Precursor >ACF81684.1 unknown [Zea mays] >AQK39739.1 pale yellow9 [Zea mays])

HSP 1 Score: 379.4 bits (973), Expect = 1.300e-101
Identity = 182/306 (59.48%), Postives = 228/306 (74.51%), Query Frame = 0
Query:   83 IIMHSTESGGGN-LVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            ++    ESGGG  LVGED+A+F+LK+QS+ +W  F  +L  VL AL V WI+P+TG+G +++  +  +   H  E V+ +L  IF V HSG+ASLR   E+++G R +RV+FA +SLPLA + I+YFINHRYDG QLW ++ + G HE +W  SFISF FLYPSTFNLLE+AAV+KPKLHMW TGIMRITRHPQMVGQ +WC AHTLW+GNS  + AS  L++HHLFG WNGDRRL  +YG E  E  +++TSVMPFAAI  GRQ LP DY KEF RLPYV IT+ T+GAY AHP MQA S+ L W
Sbjct:   64 VVAEGDESGGGPVLVGEDSAAFELKDQSVASWAYFAGILGAVLVALNVLWIDPSTGVGTKFLDAVASVSDSH--EVVMLLLTIIFAVVHSGMASLRESGEKIVGERVYRVLFAGISLPLAVTTIVYFINHRYDGTQLWQVQGITGIHELLWFSSFISFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQVIWCLAHTLWIGNSVAVAASVGLISHHLFGAWNGDRRLLSRYG-EAFEVLKKRTSVMPFAAIIDGRQKLPKDYHKEFFRLPYVAITMLTLGAYFAHPLMQASSYQLPW 366          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: XP_009379996.1 (PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 378.6 bits (971), Expect = 2.300e-101
Identity = 180/292 (61.64%), Postives = 220/292 (75.34%), Query Frame = 0
Query:   96 VGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            VGED+A+F+L EQ L +W  FT +L  VL AL + WINP+TG G  YI  ++ + P  S E V+ +L+ IF + HSGLASLR   EE+IG RA+RV+FA +SLPLA S I+YFINHRYDG QLW L+ V G HE VW  SFISF FLYPSTFNLLE+AAV+KPKLH+W TGI+RITRHPQM+GQ +WC AHTLW+GNS  +  S  L+ HH+FGVWNGDRRL  +YG +  E  + +TS++PFAAI  GRQ LP DY+KEF RLPY+ IT  T+GAY AHP MQA S+ LHW
Sbjct:   85 VGEDSAAFELGEQKLSSWAYFTAILGAVLVALNILWINPSTGFGTAYIDAVSGLSP--SPEVVLLLLIVIFAIVHSGLASLRDAGEELIGERAYRVLFAGISLPLAVSTIVYFINHRYDGTQLWQLQSVFGLHELVWFSSFISFFFLYPSTFNLLEVAAVDKPKLHLWETGIIRITRHPQMIGQVIWCLAHTLWIGNSVAVATSVGLIVHHIFGVWNGDRRLALRYG-QTFEVLKSRTSIIPFAAILDGRQKLPKDYYKEFLRLPYLTITGLTLGAYFAHPLMQASSFRLHW 373          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: AIU50045.1 (15-cis-zeta-carotene isomerase, partial [Musa acuminata])

HSP 1 Score: 378.6 bits (971), Expect = 2.300e-101
Identity = 180/292 (61.64%), Postives = 220/292 (75.34%), Query Frame = 0
Query:   96 VGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            VGED+A+F+L EQ L +W  FT +L  VL AL + WINP+TG G  YI  ++ + P  S E V+ +L+ IF + HSGLASLR   EE+IG RA+RV+FA +SLPLA S I+YFINHRYDG QLW L+ V G HE VW  SFISF FLYPSTFNLLE+AAV+KPKLH+W TGI+RITRHPQM+GQ +WC AHTLW+GNS  +  S  L+ HH+FGVWNGDRRL  +YG +  E  + +TS++PFAAI  GRQ LP DY+KEF RLPY+ IT  T+GAY AHP MQA S+ LHW
Sbjct:    1 VGEDSAAFELGEQKLSSWAYFTAILGAVLVALNILWINPSTGFGTAYIDAVSGLSP--SPEVVLLLLIVIFAIVHSGLASLRDAGEELIGERAYRVLFAGISLPLAVSTIVYFINHRYDGTQLWQLQSVFGLHELVWFSSFISFFFLYPSTFNLLEVAAVDKPKLHLWETGIIRITRHPQMIGQVIWCLAHTLWIGNSVAVATSVGLIVHHIFGVWNGDRRLALRYG-QTFEVLKSRTSIIPFAAILDGRQKLPKDYYKEFLRLPYLTITGLTLGAYFAHPLMQASSFRLHW 289          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: AIU50069.1 (15-cis-zeta-carotene isomerase, partial [Canna indica])

HSP 1 Score: 378.6 bits (971), Expect = 2.300e-101
Identity = 182/292 (62.33%), Postives = 220/292 (75.34%), Query Frame = 0
Query:   96 VGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            VGED+A+F+  EQ L +W  FT++L TVL AL V WINP+TG G  +I  ++ +    S E  + +L+ IF + HSGLASLR   E++IG RA+RV+FA VSLPL  S ++YFINHRYDG QLW L+ V G HE VW  SFISF FLYPSTFNLLE+AAV+KPKLHMW TGIMRITRHPQMVGQ +WC AHTLW+GN+  + AS  L+AHHLFGVWNGDRRL  +YG +  E  + +TSV+PFAA+  GRQ LP DY+KEF RLPYV IT  T+GAY AHP MQA S+ LHW
Sbjct:    1 VGEDSAAFEFGEQKLSSWAYFTVILGTVLVALNVLWINPSTGFGTAFIDAVSGL--SESPEVALLMLILIFALVHSGLASLRDAGEKLIGERAYRVLFAGVSLPLVVSTVVYFINHRYDGTQLWQLQNVFGIHELVWFSSFISFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQVIWCLAHTLWIGNTVAVAASIGLIAHHLFGVWNGDRRLALRYG-QAFEVLKSRTSVVPFAAVLDGRQKLPKDYYKEFVRLPYVTITALTLGAYFAHPLMQASSFQLHW 289          
The following BLAST results are available for this feature:
BLAST of NO24G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OAY68878.14.600e-10261.1515-cis-zeta-carotene isomerase, chloroplastic, par... [more]
XP_020111958.14.600e-10261.1515-cis-zeta-carotene isomerase, chloroplastic [Ana... [more]
XP_002986222.16.000e-10260.7515-cis-zeta-carotene isomerase, chloroplastic [Sel... [more]
AIU50063.17.800e-10262.2015-cis-zeta-carotene isomerase, partial [Chimonant... [more]
AIU50090.17.800e-10262.6715-cis-zeta-carotene isomerase, partial [Houttuyni... [more]
ALQ56934.11.000e-10160.8815-cis-zeta-carotene-isomerase [Crocus ancyrensis][more]
NP_001132720.11.300e-10159.4815-cis-zeta-carotene isomerase, chloroplastic [Zea... [more]
XP_009379996.12.300e-10161.64PREDICTED: 15-cis-zeta-carotene isomerase, chlorop... [more]
AIU50045.12.300e-10161.6415-cis-zeta-carotene isomerase, partial [Musa acum... [more]
AIU50069.12.300e-10162.3315-cis-zeta-carotene isomerase, partial [Canna ind... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002837NSK002837Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01560.1NO24G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598529gene_7380Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01560.1NO24G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01560 ID=NO24G01560|Name=NO24G01560|organism=Nannochloropsis oceanica|type=gene|length=2116bp
ATGGCCGCACATCGTGGCGCCATCCTCCTGGCCTTCGCCGCAGTGGCAAG
TTTTTACCCCGTTGCCGCATTTGTGCACCTAAGCCCTGCCAGATCCGGGC
AGGCTTTGGCCCTTCTAGCAGCACGTCACAATCCCGTACTGCCATCAGCA
TCAATGTCACGTCCCTCCTCATTGTCCGCCCTCCTCCGCAGCGGAGCCAC
GCAGAGCCTGCCCTTCGGTCAGCAGCGAGCAGGATCATTATCTTCCATAA
TTATGCATTCAACCGAGTCGGGTGGCGGGAACTTGGTGGGGGAGGACGCC
GCGAGCTTTGACCTGAAAGAGCAGAGCCTCAAGgtgcgtacgtttcctgt
gcgcaatgtggatgtatttcgatcgaatcttggaaaagaaaatcaattca
gtacacaatacaggtgctatcgcgatttgcggtcacatgagaaagaccca
tgcatgccatccttggtttctcatcttccttttcctcccctcctccctcc
ctccctccctccctccctcccttcctagAACTGGGGCATTTTTACCCTCC
TCCTCGTCACTGTCTTAGGAGCCCTTTTTGTGGCATGGATCAATCCAGCC
ACGGGACTGGGGGATGAATACATCCAATACTTGAACGAGATAGTACCAGG
GCATTCCTCGGAAGCCGTGATTGCTGTACTGCTGACCATATTTGGGGTTG
CTCACAGTGGGCTTGCCAGCCTTAGGCCTTGGGCAGAGGAGGTGATTGGC
GCAAGGgtaaggcttgattttcccgaaccctatttagttgtcttttagac
aacaaaatttgtcgtgacgattttctcctttccctccattctcctccttg
gtttctttcccctctcttcccactagGCATGGCGTGTGATCTTTGCCTTG
GTCAGCTTGCCTCTGGCCAGCTCGGCTATCATATACTTCATCAATCATCG
CTACGATGGAGCACAGTTGTGGGACTTAAAGCTTGTACCCGgtacgtgtc
tgtcgacatgcgcgtgtttgagagagagagagagagagagtgtgtgtgtg
tgtgagaagctggcatgtggcatttgtgcgtttgtgttgtatttcggtgt
gggtggtttgtaagttaggcagctcatcaagggtggtagaggtggcattt
gtgcgtttgttgttgtgtctttgtgtacatgcttcgttcatatcgaacca
tccggtgacaaatcatatctgaatctaattcccctcccgccctcgtccct
ccctccctcctcccgccctcgtcccttcgcctacagGCGCGCACGAGTTT
GTCTGGATCATCTCGTTTATCTCATTTCTTTTCCTCTACCCCTCCACCTT
CAACCTTCTCGAAATCGCCGCCGTCGAGAAGCCTAAGCTGCACATGTGGG
CCACGGGTATCATGCGTATCACCCGgtccgtaccgcccctccccctcttt
cgtcctttactacacccttcccatgacatgatcaagctgtatgtggtgct
gagtatataattttctcaatgtgcacattgaaatcttacattcattttat
tcttcctgttatcacctttctctctttccctccttcggttccttcctctt
tgacagACATCCTCAAATGGTGGGACAAGGGCTATGGTGTGCAGCACATA
CGCTCTGGATGGGTAATTCCTTTGTGTTGGTGGCCTCAGCATTCTTGATG
GCACATCATTTGTTTGGgtgaagaaagagggtgggagggaggggtggagg
gaagggaagtgagagaggtagaaaaggggaggacagagagagtaaaaatc
ttgagcatcggccttcaaacttcaatgcaaagccaactacacacttactt
tttttcttccttaacctcacgcccacagTGTCTGGAATGGTGACCGTCGT
CTGCGGGACAAGTACGGCGATGAGGTTATGGAAGCCTTCGAGGAGCAAAC
CTCCGTCATGCCCTTCGCTGCCATTTTTCAAGGTCGGCAAGTCCTCCCCG
CGGATTACTGGAAGGAATTTGCCCGCTTGCCGTATGTCATTATCACTTTA
GGCACGATAGGGGCGTACTTGGCTCATCCTTTCATGCAGGCGGGGAGTTG
GACATTGCATTGGTGA
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protein sequence of NO24G01560.1

>NO24G01560.1-protein ID=NO24G01560.1-protein|Name=NO24G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MAAHRGAILLAFAAVASFYPVAAFVHLSPARSGQALALLAARHNPVLPSA
SMSRPSSLSALLRSGATQSLPFGQQRAGSLSSIIMHSTESGGGNLVGEDA
ASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIV
PGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPL
ASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLL
EIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASA
FLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPA
DYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW*
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Synonyms
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