NO24G01560, NO24G01560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G01560 vs. NCBI_GenBank
Match: OAY68878.1 (15-cis-zeta-carotene isomerase, chloroplastic, partial [Ananas comosus]) HSP 1 Score: 380.9 bits (977), Expect = 4.600e-102 Identity = 181/296 (61.15%), Postives = 222/296 (75.00%), Query Frame = 0 Query: 92 GGNLVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388 GG L GED+A+FDL EQ L +W F +L VL L V WI+P+TG G ++ ++ + H E V+ +L+ IF HSG+AS R E++IG RA+RV+FA +SLPLA S I+YFINHRYDG QLW ++ VPG HE VW+ SFISF FLYPSTFNLLE+AAV+KPKLHMW TGIMRITRHPQMVGQ +WC AHTLW+GNS + AS L+AHHLFGVWNGDRRL +YG E E + +TSV+PFAAI GRQ LP +Y+KEF RLPY+ IT+ T+GAY AHP MQ+ S+ LHW Sbjct: 24 GGALRGEDSAAFDLGEQRLASWAYFAAILGAVLFGLNVVWIDPSTGFGTAFVGAVSSLSSSH--EVVMLILIIIFAAVHSGMASFRDAGEKLIGERAYRVLFAGISLPLAVSTIVYFINHRYDGTQLWQVQSVPGIHELVWVSSFISFYFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQVIWCLAHTLWIGNSVAVAASVGLIAHHLFGVWNGDRRLASRYG-EAFEVVKSRTSVIPFAAILDGRQRLPKNYYKEFIRLPYLTITILTLGAYFAHPLMQSSSYGLHW 316
BLAST of NO24G01560 vs. NCBI_GenBank
Match: XP_020111958.1 (15-cis-zeta-carotene isomerase, chloroplastic [Ananas comosus] >XP_020111959.1 15-cis-zeta-carotene isomerase, chloroplastic [Ananas comosus] >XP_020111960.1 15-cis-zeta-carotene isomerase, chloroplastic [Ananas comosus]) HSP 1 Score: 380.9 bits (977), Expect = 4.600e-102 Identity = 181/296 (61.15%), Postives = 222/296 (75.00%), Query Frame = 0 Query: 92 GGNLVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388 GG L GED+A+FDL EQ L +W F +L VL L V WI+P+TG G ++ ++ + H E V+ +L+ IF HSG+AS R E++IG RA+RV+FA +SLPLA S I+YFINHRYDG QLW ++ VPG HE VW+ SFISF FLYPSTFNLLE+AAV+KPKLHMW TGIMRITRHPQMVGQ +WC AHTLW+GNS + AS L+AHHLFGVWNGDRRL +YG E E + +TSV+PFAAI GRQ LP +Y+KEF RLPY+ IT+ T+GAY AHP MQ+ S+ LHW Sbjct: 82 GGALRGEDSAAFDLGEQRLASWAYFAAILGAVLFGLNVVWIDPSTGFGTAFVGAVSSLSSSH--EVVMLILIIIFAAVHSGMASFRDAGEKLIGERAYRVLFAGISLPLAVSTIVYFINHRYDGTQLWQVQSVPGIHELVWVSSFISFYFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQVIWCLAHTLWIGNSVAVAASVGLIAHHLFGVWNGDRRLASRYG-EAFEVVKSRTSVIPFAAILDGRQRLPKNYYKEFIRLPYLTITILTLGAYFAHPLMQSSSYGLHW 374
BLAST of NO24G01560 vs. NCBI_GenBank
Match: XP_002986222.1 (15-cis-zeta-carotene isomerase, chloroplastic [Selaginella moellendorffii] >EFJ12753.1 hypothetical protein SELMODRAFT_157819 [Selaginella moellendorffii]) HSP 1 Score: 380.6 bits (976), Expect = 6.000e-102 Identity = 178/293 (60.75%), Postives = 225/293 (76.79%), Query Frame = 0 Query: 95 LVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388 LVGED+A F+L+ Q L +W FT +L V L+ AW++P TG G Y+ +L+ + +S E VI +L IF + HSGLAS R E++IG RA+RV+FA +SLPLA SA++YFINHRY+GAQLW ++ VPG H+ VW++SF SF FLYPSTFNLLE+AAV+KPKLHMW TGIMRITRHPQMVGQ +WC AHTLW+G+SF L S L+AHHLFGVWNGDRRL +YGD E +++TSV+PF AI QGRQ LP D++KEF RLPY+IIT T+GAY +HP ++ GS +LHW Sbjct: 81 LVGEDSAVFELQSQKLSSWLYFTAILAAVTVVLYFAWLDPTTGYGTAYVDWLSTLT-NNSPELVITAMLAIFALVHSGLASFRDRGEQLIGERAYRVVFAGLSLPLAVSAVVYFINHRYEGAQLWHVQDVPGVHQLVWLLSFTSFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQFMWCFAHTLWIGSSFTLTTSIGLLAHHLFGVWNGDRRLSLRYGD-AFETVKQRTSVVPFVAIAQGRQKLPRDFYKEFLRLPYLIITALTLGAYFSHPLLRLGSSSLHW 371
BLAST of NO24G01560 vs. NCBI_GenBank
Match: AIU50063.1 (15-cis-zeta-carotene isomerase, partial [Chimonanthus praecox]) HSP 1 Score: 380.2 bits (975), Expect = 7.800e-102 Identity = 181/291 (62.20%), Postives = 221/291 (75.95%), Query Frame = 0 Query: 97 GEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388 GED+A+FDL EQ L +W FTL+L VL AL + WI+P TG G +I ++ + S E V+ +L+ IF HSG+ASLR E++IG RA+RV+FA +SLPLA S I+YFINHRY G QLWD+K VPG H+FVW+ SFISFL LYPSTFNLLE+AAV+KPK+H+W TG+MRITRHPQMVGQ +WC AHTLW+GNS V AS L+ HHLFGVWNGDRRL +YG E E + +TSV+PFAAI GRQ LP DY+KEF RLPY+ I + T+GAY AHP MQA S+ LHW Sbjct: 2 GEDSAAFDLGEQKLSSWLYFTLILGAVLFALNLVWIDPKTGFGTAFIDTVSGL--SESDEIVMLILIAIFATVHSGMASLRDAGEKLIGERAYRVLFAGISLPLAVSTIVYFINHRYGGIQLWDVKSVPGVHQFVWLSSFISFLLLYPSTFNLLEVAAVDKPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWVGNSVVAAASLGLIGHHLFGVWNGDRRLASRYG-EAFEVVKNRTSVIPFAAILDGRQKLPKDYYKEFIRLPYLTIIVLTLGAYFAHPLMQASSFGLHW 289
BLAST of NO24G01560 vs. NCBI_GenBank
Match: AIU50090.1 (15-cis-zeta-carotene isomerase, partial [Houttuynia cordata]) HSP 1 Score: 380.2 bits (975), Expect = 7.800e-102 Identity = 183/292 (62.67%), Postives = 222/292 (76.03%), Query Frame = 0 Query: 96 VGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388 VGED+A FDL +Q + +W FT++L VL AL V WI+ +TG G +I ++ I H E V+ VL IF HSGLASLR E++IG RA+RV+FA SLPLA S I+YFINHRYDG QLW ++ VPG H+FVW++SFISF FLYPSTFNLLE+AAV+KPKLH+W TGIMRITRHPQMVGQ +WC AHTLW+GN+ V+ AS L+ HHLFGVWNGDRRL +YG E E + +TS++PFAAI GRQ LP DY+KEF RLPY+ IT T+G YLAHP MQAGS+ LHW Sbjct: 1 VGEDSAVFDLGQQKVSSWVYFTVILGAVLVALDVLWIDSSTGYGKAFIDAISGISDSH--EVVMLVLFLIFATVHSGLASLRDVGEKLIGERAYRVLFAGTSLPLAFSTIVYFINHRYDGTQLWQVQGVPGVHQFVWLMSFISFFFLYPSTFNLLEVAAVDKPKLHLWETGIMRITRHPQMVGQVMWCIAHTLWVGNTLVIAASLGLIGHHLFGVWNGDRRLASRYG-EAFEEVKSRTSIIPFAAILDGRQRLPDDYYKEFFRLPYLTITAMTLGIYLAHPLMQAGSFGLHW 289
BLAST of NO24G01560 vs. NCBI_GenBank
Match: ALQ56934.1 (15-cis-zeta-carotene-isomerase [Crocus ancyrensis]) HSP 1 Score: 379.8 bits (974), Expect = 1.000e-101 Identity = 179/294 (60.88%), Postives = 224/294 (76.19%), Query Frame = 0 Query: 94 NLVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388 +LVGED+A F+L+EQ + +W F+++L +VL AL WINP+TG G +I L+ + S E V+ +L+ IF + HSG+ASLR E+ +G R +RV+FA +SLPLA S I+YFINHRYDG QLW L +PG HE VW SFISFLFLYPSTFNLLE+AAV+KPK+H+W TG+MRITRHPQMVGQ +WC AHTLW+GNS V AS L+ HHLFGVWNGDRRL+ +YG E EA + +TSV+PFAAI GRQ LP D++KEF RLPY+ IT T+GAY AHP MQ+ S+ LHW Sbjct: 70 SLVGEDSAVFELREQKVSSWIYFSVILGSVLFALDTFWINPSTGYGSAFIDSLSGV--SESKEVVMLILIFIFAITHSGMASLRDVGEKFVGERVYRVLFAGISLPLAVSTIVYFINHRYDGIQLWQLHSIPGVHELVWASSFISFLFLYPSTFNLLEVAAVDKPKMHLWETGVMRITRHPQMVGQVIWCLAHTLWIGNSVVAAASVGLIGHHLFGVWNGDRRLKARYG-ESFEALKSRTSVVPFAAILDGRQKLPKDFYKEFIRLPYLTITALTLGAYFAHPLMQSSSFGLHW 360
BLAST of NO24G01560 vs. NCBI_GenBank
Match: NP_001132720.1 (15-cis-zeta-carotene isomerase, chloroplastic [Zea mays] >B4FHU1.1 RecName: Full=15-cis-zeta-carotene isomerase, chloroplastic; Flags: Precursor >ACF81684.1 unknown [Zea mays] >AQK39739.1 pale yellow9 [Zea mays]) HSP 1 Score: 379.4 bits (973), Expect = 1.300e-101 Identity = 182/306 (59.48%), Postives = 228/306 (74.51%), Query Frame = 0 Query: 83 IIMHSTESGGGN-LVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388 ++ ESGGG LVGED+A+F+LK+QS+ +W F +L VL AL V WI+P+TG+G +++ + + H E V+ +L IF V HSG+ASLR E+++G R +RV+FA +SLPLA + I+YFINHRYDG QLW ++ + G HE +W SFISF FLYPSTFNLLE+AAV+KPKLHMW TGIMRITRHPQMVGQ +WC AHTLW+GNS + AS L++HHLFG WNGDRRL +YG E E +++TSVMPFAAI GRQ LP DY KEF RLPYV IT+ T+GAY AHP MQA S+ L W Sbjct: 64 VVAEGDESGGGPVLVGEDSAAFELKDQSVASWAYFAGILGAVLVALNVLWIDPSTGVGTKFLDAVASVSDSH--EVVMLLLTIIFAVVHSGMASLRESGEKIVGERVYRVLFAGISLPLAVTTIVYFINHRYDGTQLWQVQGITGIHELLWFSSFISFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQVIWCLAHTLWIGNSVAVAASVGLISHHLFGAWNGDRRLLSRYG-EAFEVLKKRTSVMPFAAIIDGRQKLPKDYHKEFFRLPYVAITMLTLGAYFAHPLMQASSYQLPW 366
BLAST of NO24G01560 vs. NCBI_GenBank
Match: XP_009379996.1 (PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic-like [Musa acuminata subsp. malaccensis]) HSP 1 Score: 378.6 bits (971), Expect = 2.300e-101 Identity = 180/292 (61.64%), Postives = 220/292 (75.34%), Query Frame = 0 Query: 96 VGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388 VGED+A+F+L EQ L +W FT +L VL AL + WINP+TG G YI ++ + P S E V+ +L+ IF + HSGLASLR EE+IG RA+RV+FA +SLPLA S I+YFINHRYDG QLW L+ V G HE VW SFISF FLYPSTFNLLE+AAV+KPKLH+W TGI+RITRHPQM+GQ +WC AHTLW+GNS + S L+ HH+FGVWNGDRRL +YG + E + +TS++PFAAI GRQ LP DY+KEF RLPY+ IT T+GAY AHP MQA S+ LHW Sbjct: 85 VGEDSAAFELGEQKLSSWAYFTAILGAVLVALNILWINPSTGFGTAYIDAVSGLSP--SPEVVLLLLIVIFAIVHSGLASLRDAGEELIGERAYRVLFAGISLPLAVSTIVYFINHRYDGTQLWQLQSVFGLHELVWFSSFISFFFLYPSTFNLLEVAAVDKPKLHLWETGIIRITRHPQMIGQVIWCLAHTLWIGNSVAVATSVGLIVHHIFGVWNGDRRLALRYG-QTFEVLKSRTSIIPFAAILDGRQKLPKDYYKEFLRLPYLTITGLTLGAYFAHPLMQASSFRLHW 373
BLAST of NO24G01560 vs. NCBI_GenBank
Match: AIU50045.1 (15-cis-zeta-carotene isomerase, partial [Musa acuminata]) HSP 1 Score: 378.6 bits (971), Expect = 2.300e-101 Identity = 180/292 (61.64%), Postives = 220/292 (75.34%), Query Frame = 0 Query: 96 VGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388 VGED+A+F+L EQ L +W FT +L VL AL + WINP+TG G YI ++ + P S E V+ +L+ IF + HSGLASLR EE+IG RA+RV+FA +SLPLA S I+YFINHRYDG QLW L+ V G HE VW SFISF FLYPSTFNLLE+AAV+KPKLH+W TGI+RITRHPQM+GQ +WC AHTLW+GNS + S L+ HH+FGVWNGDRRL +YG + E + +TS++PFAAI GRQ LP DY+KEF RLPY+ IT T+GAY AHP MQA S+ LHW Sbjct: 1 VGEDSAAFELGEQKLSSWAYFTAILGAVLVALNILWINPSTGFGTAYIDAVSGLSP--SPEVVLLLLIVIFAIVHSGLASLRDAGEELIGERAYRVLFAGISLPLAVSTIVYFINHRYDGTQLWQLQSVFGLHELVWFSSFISFFFLYPSTFNLLEVAAVDKPKLHLWETGIIRITRHPQMIGQVIWCLAHTLWIGNSVAVATSVGLIVHHIFGVWNGDRRLALRYG-QTFEVLKSRTSIIPFAAILDGRQKLPKDYYKEFLRLPYLTITGLTLGAYFAHPLMQASSFRLHW 289
BLAST of NO24G01560 vs. NCBI_GenBank
Match: AIU50069.1 (15-cis-zeta-carotene isomerase, partial [Canna indica]) HSP 1 Score: 378.6 bits (971), Expect = 2.300e-101 Identity = 182/292 (62.33%), Postives = 220/292 (75.34%), Query Frame = 0 Query: 96 VGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388 VGED+A+F+ EQ L +W FT++L TVL AL V WINP+TG G +I ++ + S E + +L+ IF + HSGLASLR E++IG RA+RV+FA VSLPL S ++YFINHRYDG QLW L+ V G HE VW SFISF FLYPSTFNLLE+AAV+KPKLHMW TGIMRITRHPQMVGQ +WC AHTLW+GN+ + AS L+AHHLFGVWNGDRRL +YG + E + +TSV+PFAA+ GRQ LP DY+KEF RLPYV IT T+GAY AHP MQA S+ LHW Sbjct: 1 VGEDSAAFEFGEQKLSSWAYFTVILGTVLVALNVLWINPSTGFGTAFIDAVSGL--SESPEVALLMLILIFALVHSGLASLRDAGEKLIGERAYRVLFAGVSLPLVVSTVVYFINHRYDGTQLWQLQNVFGIHELVWFSSFISFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQVIWCLAHTLWIGNTVAVAASIGLIAHHLFGVWNGDRRLALRYG-QAFEVLKSRTSVVPFAAVLDGRQKLPKDYYKEFVRLPYVTITALTLGAYFAHPLMQASSFQLHW 289 The following BLAST results are available for this feature:
BLAST of NO24G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G01560 ID=NO24G01560|Name=NO24G01560|organism=Nannochloropsis oceanica|type=gene|length=2116bpback to top protein sequence of NO24G01560.1 >NO24G01560.1-protein ID=NO24G01560.1-protein|Name=NO24G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bpback to top Synonyms
Publications
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