NO24G01560.1, NO24G01560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01560.1
Unique NameNO24G01560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1164
Alignment locationchr24:413536..415651 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:413536..415651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01560.1 vs.
Match: CEL93844.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 421.0 bits (1081), Expect = 4.000e-114
Identity = 198/288 (68.75%), Postives = 233/288 (80.90%), Query Frame = 0 
Query:   96 VGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSW 384
            VGEDAA FDL+EQSLK+WGIF++LLVTVLGAL+V+WI+P TG G +Y++ L       S E V+  L+ IF VAHSGLASLRP  E +IGARAWRV+FAL+SLPLA SAI YFINHRYDG QLWDL+ VPG HE VW +S +SF FLYPSTFNLLE+AAV+KP+LH+W +G+MRITRHPQMVGQGLWC AHTLW+GNSF L  S  LMAHHLFGVW+GD+RLR KYG E  +  + +TSV+PFAA+  GRQ LP DYWKEF RLPY ++   T+GAY AHPFMQA SW
Sbjct:   73 VGEDAARFDLEEQSLKSWGIFSVLLVTVLGALYVSWISPETGFGKDYLRLLEST--SDSPEVVMTELMGIFAVAHSGLASLRPRMEGIIGARAWRVVFALMSLPLAFSAIAYFINHRYDGVQLWDLRNVPGVHEVVWGLSLVSFFFLYPSTFNLLEVAAVDKPQLHLWESGVMRITRHPQMVGQGLWCLAHTLWIGNSFTLWTSVLLMAHHLFGVWHGDQRLRAKYG-EAFDQVQRRTSVVPFAAVIDGRQRLPDDYWKEFVRLPYAVVLAATLGAYWAHPFMQAYSW 357
The following BLAST results are available for this feature:
BLAST of NO24G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CEL93844.14.000e-11468.75unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01560NO24G01560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01560.1NO24G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01560.1.cds1NO24G01560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01560.1.cds2NO24G01560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01560.1.cds3NO24G01560.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01560.1.cds4NO24G01560.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01560.1.cds5NO24G01560.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01560.1.cds6NO24G01560.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01560.1 ID=NO24G01560.1|Name=NO24G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
ATGGCCGCACATCGTGGCGCCATCCTCCTGGCCTTCGCCGCAGTGGCAAG
TTTTTACCCCGTTGCCGCATTTGTGCACCTAAGCCCTGCCAGATCCGGGC
AGGCTTTGGCCCTTCTAGCAGCACGTCACAATCCCGTACTGCCATCAGCA
TCAATGTCACGTCCCTCCTCATTGTCCGCCCTCCTCCGCAGCGGAGCCAC
GCAGAGCCTGCCCTTCGGTCAGCAGCGAGCAGGATCATTATCTTCCATAA
TTATGCATTCAACCGAGTCGGGTGGCGGGAACTTGGTGGGGGAGGACGCC
GCGAGCTTTGACCTGAAAGAGCAGAGCCTCAAGAACTGGGGCATTTTTAC
CCTCCTCCTCGTCACTGTCTTAGGAGCCCTTTTTGTGGCATGGATCAATC
CAGCCACGGGACTGGGGGATGAATACATCCAATACTTGAACGAGATAGTA
CCAGGGCATTCCTCGGAAGCCGTGATTGCTGTACTGCTGACCATATTTGG
GGTTGCTCACAGTGGGCTTGCCAGCCTTAGGCCTTGGGCAGAGGAGGTGA
TTGGCGCAAGGGCATGGCGTGTGATCTTTGCCTTGGTCAGCTTGCCTCTG
GCCAGCTCGGCTATCATATACTTCATCAATCATCGCTACGATGGAGCACA
GTTGTGGGACTTAAAGCTTGTACCCGGCGCGCACGAGTTTGTCTGGATCA
TCTCGTTTATCTCATTTCTTTTCCTCTACCCCTCCACCTTCAACCTTCTC
GAAATCGCCGCCGTCGAGAAGCCTAAGCTGCACATGTGGGCCACGGGTAT
CATGCGTATCACCCGACATCCTCAAATGGTGGGACAAGGGCTATGGTGTG
CAGCACATACGCTCTGGATGGGTAATTCCTTTGTGTTGGTGGCCTCAGCA
TTCTTGATGGCACATCATTTGTTTGGTGTCTGGAATGGTGACCGTCGTCT
GCGGGACAAGTACGGCGATGAGGTTATGGAAGCCTTCGAGGAGCAAACCT
CCGTCATGCCCTTCGCTGCCATTTTTCAAGGTCGGCAAGTCCTCCCCGCG
GATTACTGGAAGGAATTTGCCCGCTTGCCGTATGTCATTATCACTTTAGG
CACGATAGGGGCGTACTTGGCTCATCCTTTCATGCAGGCGGGGAGTTGGA
CATTGCATTGGTGA
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protein sequence of NO24G01560.1

>NO24G01560.1-protein ID=NO24G01560.1-protein|Name=NO24G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MAAHRGAILLAFAAVASFYPVAAFVHLSPARSGQALALLAARHNPVLPSA
SMSRPSSLSALLRSGATQSLPFGQQRAGSLSSIIMHSTESGGGNLVGEDA
ASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIV
PGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPL
ASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLL
EIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASA
FLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPA
DYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW*
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mRNA from alignment at chr24:413536..415651+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01560.1 ID=NO24G01560.1|Name=NO24G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2116bp|location=Sequence derived from alignment at chr24:413536..415651+ (Nannochloropsis oceanica)
ATGGCCGCACATCGTGGCGCCATCCTCCTGGCCTTCGCCGCAGTGGCAAG
TTTTTACCCCGTTGCCGCATTTGTGCACCTAAGCCCTGCCAGATCCGGGC
AGGCTTTGGCCCTTCTAGCAGCACGTCACAATCCCGTACTGCCATCAGCA
TCAATGTCACGTCCCTCCTCATTGTCCGCCCTCCTCCGCAGCGGAGCCAC
GCAGAGCCTGCCCTTCGGTCAGCAGCGAGCAGGATCATTATCTTCCATAA
TTATGCATTCAACCGAGTCGGGTGGCGGGAACTTGGTGGGGGAGGACGCC
GCGAGCTTTGACCTGAAAGAGCAGAGCCTCAAGGTGCGTACGTTTCCTGT
GCGCAATGTGGATGTATTTCGATCGAATCTTGGAAAAGAAAATCAATTCA
GTACACAATACAGGTGCTATCGCGATTTGCGGTCACATGAGAAAGACCCA
TGCATGCCATCCTTGGTTTCTCATCTTCCTTTTCCTCCCCTCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTTCCTAGAACTGGGGCATTTTTACCCTCC
TCCTCGTCACTGTCTTAGGAGCCCTTTTTGTGGCATGGATCAATCCAGCC
ACGGGACTGGGGGATGAATACATCCAATACTTGAACGAGATAGTACCAGG
GCATTCCTCGGAAGCCGTGATTGCTGTACTGCTGACCATATTTGGGGTTG
CTCACAGTGGGCTTGCCAGCCTTAGGCCTTGGGCAGAGGAGGTGATTGGC
GCAAGGGTAAGGCTTGATTTTCCCGAACCCTATTTAGTTGTCTTTTAGAC
AACAAAATTTGTCGTGACGATTTTCTCCTTTCCCTCCATTCTCCTCCTTG
GTTTCTTTCCCCTCTCTTCCCACTAGGCATGGCGTGTGATCTTTGCCTTG
GTCAGCTTGCCTCTGGCCAGCTCGGCTATCATATACTTCATCAATCATCG
CTACGATGGAGCACAGTTGTGGGACTTAAAGCTTGTACCCGGTACGTGTC
TGTCGACATGCGCGTGTTTGAGAGAGAGAGAGAGAGAGAGTGTGTGTGTG
TGTGAGAAGCTGGCATGTGGCATTTGTGCGTTTGTGTTGTATTTCGGTGT
GGGTGGTTTGTAAGTTAGGCAGCTCATCAAGGGTGGTAGAGGTGGCATTT
GTGCGTTTGTTGTTGTGTCTTTGTGTACATGCTTCGTTCATATCGAACCA
TCCGGTGACAAATCATATCTGAATCTAATTCCCCTCCCGCCCTCGTCCCT
CCCTCCCTCCTCCCGCCCTCGTCCCTTCGCCTACAGGCGCGCACGAGTTT
GTCTGGATCATCTCGTTTATCTCATTTCTTTTCCTCTACCCCTCCACCTT
CAACCTTCTCGAAATCGCCGCCGTCGAGAAGCCTAAGCTGCACATGTGGG
CCACGGGTATCATGCGTATCACCCGGTCCGTACCGCCCCTCCCCCTCTTT
CGTCCTTTACTACACCCTTCCCATGACATGATCAAGCTGTATGTGGTGCT
GAGTATATAATTTTCTCAATGTGCACATTGAAATCTTACATTCATTTTAT
TCTTCCTGTTATCACCTTTCTCTCTTTCCCTCCTTCGGTTCCTTCCTCTT
TGACAGACATCCTCAAATGGTGGGACAAGGGCTATGGTGTGCAGCACATA
CGCTCTGGATGGGTAATTCCTTTGTGTTGGTGGCCTCAGCATTCTTGATG
GCACATCATTTGTTTGGGTGAAGAAAGAGGGTGGGAGGGAGGGGTGGAGG
GAAGGGAAGTGAGAGAGGTAGAAAAGGGGAGGACAGAGAGAGTAAAAATC
TTGAGCATCGGCCTTCAAACTTCAATGCAAAGCCAACTACACACTTACTT
TTTTTCTTCCTTAACCTCACGCCCACAGTGTCTGGAATGGTGACCGTCGT
CTGCGGGACAAGTACGGCGATGAGGTTATGGAAGCCTTCGAGGAGCAAAC
CTCCGTCATGCCCTTCGCTGCCATTTTTCAAGGTCGGCAAGTCCTCCCCG
CGGATTACTGGAAGGAATTTGCCCGCTTGCCGTATGTCATTATCACTTTA
GGCACGATAGGGGCGTACTTGGCTCATCCTTTCATGCAGGCGGGGAGTTG
GACATTGCATTGGTGA
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Coding sequence (CDS) from alignment at chr24:413536..415651+

>NO24G01560.1 ID=NO24G01560.1|Name=NO24G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr24:413536..415651+ (Nannochloropsis oceanica)
ATGGCCGCACATCGTGGCGCCATCCTCCTGGCCTTCGCCGCAGTGGCAAG
TTTTTACCCCGTTGCCGCATTTGTGCACCTAAGCCCTGCCAGATCCGGGC
AGGCTTTGGCCCTTCTAGCAGCACGTCACAATCCCGTACTGCCATCAGCA
TCAATGTCACGTCCCTCCTCATTGTCCGCCCTCCTCCGCAGCGGAGCCAC
GCAGAGCCTGCCCTTCGGTCAGCAGCGAGCAGGATCATTATCTTCCATAA
TTATGCATTCAACCGAGTCGGGTGGCGGGAACTTGGTGGGGGAGGACGCC
GCGAGCTTTGACCTGAAAGAGCAGAGCCTCAAGAACTGGGGCATTTTTAC
CCTCCTCCTCGTCACTGTCTTAGGAGCCCTTTTTGTGGCATGGATCAATC
CAGCCACGGGACTGGGGGATGAATACATCCAATACTTGAACGAGATAGTA
CCAGGGCATTCCTCGGAAGCCGTGATTGCTGTACTGCTGACCATATTTGG
GGTTGCTCACAGTGGGCTTGCCAGCCTTAGGCCTTGGGCAGAGGAGGTGA
TTGGCGCAAGGGCATGGCGTGTGATCTTTGCCTTGGTCAGCTTGCCTCTG
GCCAGCTCGGCTATCATATACTTCATCAATCATCGCTACGATGGAGCACA
GTTGTGGGACTTAAAGCTTGTACCCGGCGCGCACGAGTTTGTCTGGATCA
TCTCGTTTATCTCATTTCTTTTCCTCTACCCCTCCACCTTCAACCTTCTC
GAAATCGCCGCCGTCGAGAAGCCTAAGCTGCACATGTGGGCCACGGGTAT
CATGCGTATCACCCGACATCCTCAAATGGTGGGACAAGGGCTATGGTGTG
CAGCACATACGCTCTGGATGGGTAATTCCTTTGTGTTGGTGGCCTCAGCA
TTCTTGATGGCACATCATTTGTTTGGTGTCTGGAATGGTGACCGTCGTCT
GCGGGACAAGTACGGCGATGAGGTTATGGAAGCCTTCGAGGAGCAAACCT
CCGTCATGCCCTTCGCTGCCATTTTTCAAGGTCGGCAAGTCCTCCCCGCG
GATTACTGGAAGGAATTTGCCCGCTTGCCGTATGTCATTATCACTTTAGG
CACGATAGGGGCGTACTTGGCTCATCCTTTCATGCAGGCGGGGAGTTGGA
CATTGCATTGGTGA
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Synonyms
Publications