NO24G01560, NO24G01560 (gene) Nannochloropsis oceanica

Overview
NameNO24G01560
Unique NameNO24G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2116
Alignment locationchr24:413536..415651 +

Link to JBrowse

Properties
Property NameValue
Description15-cis-zeta-carotene isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:413536..415651 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009915NnrU_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO24G01560 vs. NCBI_GenBank
Match: CEL93844.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 421.4 bits (1082), Expect = 3.000e-114
Identity = 198/288 (68.75%), Postives = 233/288 (80.90%), Query Frame = 0
Query:   96 VGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSW 384
            VGEDAA FDL+EQSLK+WGIF++LLVTVLGAL+V+WI+P TG G +Y++ L       S E V+  L+ IF VAHSGLASLRP  E +IGARAWRV+FAL+SLPLA SAI YFINHRYDG QLWDL+ VPG HE VW +S +SF FLYPSTFNLLE+AAV+KP+LH+W +G+MRITRHPQMVGQGLWC AHTLW+GNSF L  S  LMAHHLFGVW+GD+RLR KYG E  +  + +TSV+PFAA+  GRQ LP DYWKEF RLPY ++   T+GAY AHPFMQA SW
Sbjct:   73 VGEDAARFDLEEQSLKSWGIFSVLLVTVLGALYVSWISPETGFGKDYLRLLES--TSDSPEVVMTELMGIFAVAHSGLASLRPRMEGIIGARAWRVVFALMSLPLAFSAIAYFINHRYDGVQLWDLRNVPGVHEVVWGLSLVSFFFLYPSTFNLLEVAAVDKPQLHLWESGVMRITRHPQMVGQGLWCLAHTLWIGNSFTLWTSVLLMAHHLFGVWHGDQRLRAKYG-EAFDQVQRRTSVVPFAAVIDGRQRLPDDYWKEFVRLPYAVVLAATLGAYWAHPFMQAYSW 357          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: KXZ44175.1 (hypothetical protein GPECTOR_71g536 [Gonium pectorale])

HSP 1 Score: 407.9 bits (1047), Expect = 3.500e-110
Identity = 211/372 (56.72%), Postives = 262/372 (70.43%), Query Frame = 0
Query:   27 LSPARSGQALAL---LAARHNPVLPSASMSRPSSLSALLRSGATQSLPFGQQRA---GSLSSIIMHSTESGGGNLVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRIT-----RHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            L+PAR  Q L L     AR     P+  + RP  L+ L+   + + +  G       G          E+    LVGEDAASFDL++QSL++WG+F  LL  VLGAL+V WI P  GL D+Y+  +  +    SSE  I ++L IF +AHSGLA LRP+ EE+IG RA+RV+FALVSLPLA  AI+YFINHRYDG  LWD++ +PG HE VW+++F+SF FLYPSTFN+LE+AAV+KPKLH+W TGIMRI      RHPQMVGQ +WCAAHTLW+GNSF++V SA LMAHHLFG W+GDRRL+ KYGD   EA + +TSV+PFAAI  GRQ LPADYWKEFAR PY  +T  T+GAY AHP MQA S++L W
Sbjct:  865 LTPARWQQLLQLEHTREARLRVGAPALPVVRPIRLTQLV---SQRPIIIGSSPVAIPGVACRAAQQEPEATTPQLVGEDAASFDLEKQSLQSWGLFVALLSVVLGALYVVWIQPGFGLADDYLAAIQSL--AGSSEVTITLILLIFAIAHSGLAGLRPYGEEIIGPRAYRVMFALVSLPLAVVAIVYFINHRYDGVPLWDVRGLPGVHELVWVLNFVSFWFLYPSTFNILEVAAVDKPKLHLWETGIMRIRFAGGGRHPQMVGQAIWCAAHTLWIGNSFMVVTSACLMAHHLFGCWHGDRRLKAKYGD-AFEAVKARTSVIPFAAILDGRQQLPADYWKEFARAPYFAVTALTLGAYWAHPLMQAASFSLKW 1230          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: GAX73050.1 (hypothetical protein CEUSTIGMA_g503.t1 [Chlamydomonas eustigma])

HSP 1 Score: 397.9 bits (1021), Expect = 3.600e-107
Identity = 185/294 (62.93%), Postives = 232/294 (78.91%), Query Frame = 0
Query:   94 NLVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            +LVGEDAA+FD++ QSLK+WG+F  LL  VLG L++ WI P TGL D+Y+Q + + +   + E  I ++L +F + HSGLA LRP AE++IGARA+RVIFAL SLPLA+ A++YFINHRYDG  LWDL+ V G HE VW ++FISF FLYPSTFN+LE+AAV++PKLHMW TGIMRITRHPQMVGQ +WC AHTLW+GNSF +V S  LMAHHLFG W+GDRRL  KYG E  E+ + +TS+ PF AI++GRQ LPADY+KEF R+PY  +T+ T+GAYLAHP MQ  S+ L W
Sbjct:   68 SLVGEDAAAFDVQRQSLKSWGLFFGLLTGVLGLLYLVWIQPGTGLADDYVQTI-KTLSNDNPEGTITLILLVFAIFHSGLAGLRPQAEKLIGARAYRVIFALGSLPLATVALVYFINHRYDGTPLWDLRGVSGIHELVWTLNFISFYFLYPSTFNILEVAAVDEPKLHMWETGIMRITRHPQMVGQAMWCLAHTLWIGNSFTVVTSLGLMAHHLFGCWHGDRRLSSKYG-EAFESVKARTSIAPFQAIWEGRQQLPADYYKEFLRVPYAAVTIFTLGAYLAHPIMQGASYYLGW 359          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: GAQ80590.1 (15-cis-zeta-carotene isomerase [Klebsormidium nitens])

HSP 1 Score: 384.4 bits (986), Expect = 4.100e-103
Identity = 186/313 (59.42%), Postives = 229/313 (73.16%), Query Frame = 0
Query:   75 QRAGSLSSIIMHSTESGGGNLVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            Q A ++   +   + +    LVGEDA  FD+  Q   +W  FT++L  VL  L+V WI+P TG G +YI  L   V G S EA I  LL+IF + HSG A+LR  AE++IGARA+RV+FA +SLPLA S+++YFINHRYDG QLW L+ VPGAHE VWI+SFISF FLYPSTFNLLE+AAV+KPKLHMW TGI+RITRHPQM GQ LWC AHTLW+GNSF LV S  L AHHLFGVW+GD+RL  KYGD      + +TSV+PF AI +GRQ LP D++KE+ R+PY +I   T+GAY +HP MQ GS+ LHW
Sbjct:  105 QEASTVPDALAAQSGALADGLVGEDAGVFDVTAQKTSSWVNFTIVLAVVLAILYVVWIDPTTGFGGKYIDALEGAV-GGSHEATIIALLSIFALVHSGGAALRAKAEDIIGARAYRVLFAGLSLPLAVSSVVYFINHRYDGTQLWQLRTVPGAHELVWIVSFISFFFLYPSTFNLLEVAAVDKPKLHMWETGILRITRHPQMTGQLLWCLAHTLWIGNSFTLVTSLGLCAHHLFGVWHGDQRLEAKYGD-AFRTVKARTSVVPFQAIIEGRQKLPQDWYKEYLRVPYFVIVGFTLGAYFSHPLMQQGSFWLHW 415          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: XP_020690862.1 (15-cis-zeta-carotene isomerase, chloroplastic [Dendrobium catenatum] >PKU77559.1 15-cis-zeta-carotene isomerase, chloroplastic [Dendrobium catenatum])

HSP 1 Score: 384.0 bits (985), Expect = 5.400e-103
Identity = 185/298 (62.08%), Postives = 227/298 (76.17%), Query Frame = 0
Query:   90 SGGGNLVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            +G  +LVGED+A+F+L EQ L +W  FT++L  VL AL   WINP+TG G  +I  ++ I    S E V+ +L+ IF V HSGLASLR   E++IG RA+RV+FA VSLPLA S+I+YFINHRYDG QLW ++ VPG H+ VW+ SFISF FLYPSTFNLLE+AAV+KPK+H+W TGIMRITRHPQMVGQ +WC AHTLW+GNS  + AS  L+ HHLFGVWNGDRRL  +YGD   +A + +TS++PFAAI  GRQ LP DY KEF RLPY+ IT  T+GAY AHP MQA S+ LHW
Sbjct:   79 AGDDSLVGEDSAAFELGEQKLASWVYFTVILGAVLFALDALWINPSTGYGAAFISAVSSI--SESPEVVVLILVLIFAVIHSGLASLRDTFEKLIGERAYRVLFAGVSLPLAVSSIVYFINHRYDGTQLWQVQSVPGVHQLVWLSSFISFFFLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQMVGQVIWCLAHTLWIGNSVAIAASIGLIGHHLFGVWNGDRRLAARYGD-AFDAVKSRTSIVPFAAILDGRQRLPKDYHKEFLRLPYLTITALTLGAYFAHPLMQASSFGLHW 373          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: AIU50044.1 (15-cis-zeta-carotene isomerase, partial [Magnolia denudata])

HSP 1 Score: 382.9 bits (982), Expect = 1.200e-102
Identity = 186/292 (63.70%), Postives = 221/292 (75.68%), Query Frame = 0
Query:   96 VGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            VGEDAA FDL EQ L +W  FT +L  VL AL + WI+P+TG G  ++  ++ +   H  E VI +L+ IF   HSGLASLR   E+VIG RA+RV+FA +SLPLA S I+YFINHRYDG QLWD+K VPG HE VWI SFISF FLYPSTFNLLE+AAV+KPK+H+W TGIMRITRHPQMVGQ +WC AH LW+GNS V  AS  L+ HHLFGVWNGDRRL  +YG E  +A + +TSV+PF AI  GRQ LP DY++EF RLPY+ IT  T+GAYLAHP MQA S+ LHW
Sbjct:    1 VGEDAAVFDLGEQKLSSWIYFTGILGAVLFALNLVWIDPSTGFGTAFVDSVSGLSESH--EVVILILILIFATVHSGLASLRDAGEKVIGERAFRVLFAGISLPLAVSTIVYFINHRYDGIQLWDVKGVPGVHELVWISSFISFFFLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQMVGQVIWCLAHMLWIGNSVVAAASFGLIGHHLFGVWNGDRRLASRYG-EAFDAVKGRTSVIPFVAILDGRQKLPKDYYREFLRLPYLTITFLTLGAYLAHPLMQAASFRLHW 289          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: EFJ13919.1 (hypothetical protein SELMODRAFT_13999, partial [Selaginella moellendorffii])

HSP 1 Score: 382.1 bits (980), Expect = 2.000e-102
Identity = 179/293 (61.09%), Postives = 226/293 (77.13%), Query Frame = 0
Query:   95 LVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            LVGED+A F+L+ Q L +W  FT +L  V   L+ AW++P+TG G  Y+ +L+ +   +S E VI  +L IF + HSGLAS R   E++IG RA+RV+FA +SLPLA SA++YFINHRY+GAQLW ++ VPG H+ VW++SF SF FLYPSTFNLLE+AAV+KPKLHMW TGIMRITRHPQMVGQ +WC AHTLW+G+SF L  S  L+AHHLFGVWNGDRRL  +YGD   EA  ++TSV+PF AI QGRQ LP D++KEF RLPY+IIT  T+GAY +HP ++ GS +LHW
Sbjct:    1 LVGEDSAVFELQSQKLSSWLYFTAILAAVTVVLYFAWLDPSTGYGTAYVDWLSTLT-NNSPELVITAMLAIFALVHSGLASFRDRGEQLIGERAYRVVFAGLSLPLAVSAVVYFINHRYEGAQLWHVQDVPGVHQLVWLLSFTSFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQFMWCFAHTLWIGSSFTLTTSIGLLAHHLFGVWNGDRRLSLRYGD-AFEAVRQRTSVVPFVAIAQGRQKLPRDFYKEFLRLPYLIITALTLGAYFSHPLLRLGSSSLHW 291          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: AIU50049.1 (15-cis-zeta-carotene isomerase, partial [Acorus calamus])

HSP 1 Score: 382.1 bits (980), Expect = 2.000e-102
Identity = 182/292 (62.33%), Postives = 221/292 (75.68%), Query Frame = 0
Query:   96 VGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            VGED+A+F+L EQS+K+W  F  +L  VL AL V WI+P+TG G  +++ +       S E ++ VL+ IF   HSGLASLR   E+++G RA+RV+FA  SLPLA S I+YFINHRYDG QLW ++ VPG H+FVW+ SFISF FLYPSTFNLLE+AAV+KPKLHMW TGIMRITRHPQMVGQ +WC AHTLW+GNS  + AS  L+ HHLFGVWNGDRRL  +YG E     + +TSV+PFAAI  GRQ LP DY+KEF RLPY+ IT  T+GAYLAHP MQA S+ LHW
Sbjct:    1 VGEDSAAFELGEQSIKSWVYFGAILGAVLFALDVVWIDPSTGFGTAFVEAVGGF--SDSPEVMVLVLILIFATVHSGLASLRASCEKLVGERAYRVLFAGTSLPLAVSTIVYFINHRYDGTQLWQVQSVPGVHQFVWVASFISFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQVIWCVAHTLWIGNSVAVAASIGLIGHHLFGVWNGDRRLSLRYG-EAFNVLKSRTSVLPFAAILDGRQKLPKDYFKEFIRLPYLTITFLTLGAYLAHPLMQAASYRLHW 289          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: XP_002985044.2 (15-cis-zeta-carotene isomerase, chloroplastic [Selaginella moellendorffii])

HSP 1 Score: 382.1 bits (980), Expect = 2.000e-102
Identity = 179/293 (61.09%), Postives = 226/293 (77.13%), Query Frame = 0
Query:   95 LVGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            LVGED+A F+L+ Q L +W  FT +L  V   L+ AW++P+TG G  Y+ +L+ +   +S E VI  +L IF + HSGLAS R   E++IG RA+RV+FA +SLPLA SA++YFINHRY+GAQLW ++ VPG H+ VW++SF SF FLYPSTFNLLE+AAV+KPKLHMW TGIMRITRHPQMVGQ +WC AHTLW+G+SF L  S  L+AHHLFGVWNGDRRL  +YGD   EA  ++TSV+PF AI QGRQ LP D++KEF RLPY+IIT  T+GAY +HP ++ GS +LHW
Sbjct:   81 LVGEDSAVFELQSQKLSSWLYFTAILAAVTVVLYFAWLDPSTGYGTAYVDWLSTLT-NNSPELVITAMLAIFALVHSGLASFRDRGEQLIGERAYRVVFAGLSLPLAVSAVVYFINHRYEGAQLWHVQDVPGVHQLVWLLSFTSFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQMVGQFMWCFAHTLWIGSSFTLTTSIGLLAHHLFGVWNGDRRLSLRYGD-AFEAVRQRTSVVPFVAIAQGRQKLPRDFYKEFLRLPYLIITALTLGAYFSHPLLRLGSSSLHW 371          
BLAST of NO24G01560 vs. NCBI_GenBank
Match: AIU50059.1 (15-cis-zeta-carotene isomerase, partial [Buxus sinica])

HSP 1 Score: 381.3 bits (978), Expect = 3.500e-102
Identity = 181/292 (61.99%), Postives = 225/292 (77.05%), Query Frame = 0
Query:   96 VGEDAASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIVPGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPLASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLLEIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASAFLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPADYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW 388
            VGED+A F+L +Q + +W  FT +L TVL AL V WI+ +TG G  ++  +  +   H  E  + +L+ IF +AHSGLASLR   E++IG RA+RV+FA +SLPLA S I+YFINHRYDG QLW L+ VPG H+ VWI+SF+SFLFLYPSTFNLLE+AAV+KPK+H+W TGIMRITRHPQMVGQ +WC AHT+W+GNS V+ AS  L+AHHLFGVWNGDRRL  +YG E  E  + +TSV+PFAAI  GRQ LP DY+KEF RLPY+ IT  T+GAYL+HP MQA S+ LHW
Sbjct:    1 VGEDSAVFELGKQKISSWVYFTGILGTVLFALNVVWIDSSTGFGTTFVDAVEGLSESH--EVAMLILIFIFAIAHSGLASLRDSGEKLIGERAYRVLFAGLSLPLALSTIVYFINHRYDGVQLWQLQSVPGVHQLVWILSFVSFLFLYPSTFNLLEVAAVDKPKMHLWETGIMRITRHPQMVGQAMWCLAHTVWIGNSVVVAASLGLIAHHLFGVWNGDRRLALRYG-EAFEIVKHRTSVVPFAAILDGRQKLPKDYYKEFLRLPYLTITAVTLGAYLSHPLMQAASFNLHW 289          
The following BLAST results are available for this feature:
BLAST of NO24G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CEL93844.13.000e-11468.75unnamed protein product [Vitrella brassicaformis C... [more]
KXZ44175.13.500e-11056.72hypothetical protein GPECTOR_71g536 [Gonium pector... [more]
GAX73050.13.600e-10762.93hypothetical protein CEUSTIGMA_g503.t1 [Chlamydomo... [more]
GAQ80590.14.100e-10359.4215-cis-zeta-carotene isomerase [Klebsormidium nite... [more]
XP_020690862.15.400e-10362.0815-cis-zeta-carotene isomerase, chloroplastic [Den... [more]
AIU50044.11.200e-10263.7015-cis-zeta-carotene isomerase, partial [Magnolia ... [more]
EFJ13919.12.000e-10261.09hypothetical protein SELMODRAFT_13999, partial [Se... [more]
AIU50049.12.000e-10262.3315-cis-zeta-carotene isomerase, partial [Acorus ca... [more]
XP_002985044.22.000e-10261.0915-cis-zeta-carotene isomerase, chloroplastic [Sel... [more]
AIU50059.13.500e-10261.9915-cis-zeta-carotene isomerase, partial [Buxus sin... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002837NSK002837Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01560.1NO24G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598529gene_7380Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01560.1NO24G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01560 ID=NO24G01560|Name=NO24G01560|organism=Nannochloropsis oceanica|type=gene|length=2116bp
ATGGCCGCACATCGTGGCGCCATCCTCCTGGCCTTCGCCGCAGTGGCAAG
TTTTTACCCCGTTGCCGCATTTGTGCACCTAAGCCCTGCCAGATCCGGGC
AGGCTTTGGCCCTTCTAGCAGCACGTCACAATCCCGTACTGCCATCAGCA
TCAATGTCACGTCCCTCCTCATTGTCCGCCCTCCTCCGCAGCGGAGCCAC
GCAGAGCCTGCCCTTCGGTCAGCAGCGAGCAGGATCATTATCTTCCATAA
TTATGCATTCAACCGAGTCGGGTGGCGGGAACTTGGTGGGGGAGGACGCC
GCGAGCTTTGACCTGAAAGAGCAGAGCCTCAAGgtgcgtacgtttcctgt
gcgcaatgtggatgtatttcgatcgaatcttggaaaagaaaatcaattca
gtacacaatacaggtgctatcgcgatttgcggtcacatgagaaagaccca
tgcatgccatccttggtttctcatcttccttttcctcccctcctccctcc
ctccctccctccctccctcccttcctagAACTGGGGCATTTTTACCCTCC
TCCTCGTCACTGTCTTAGGAGCCCTTTTTGTGGCATGGATCAATCCAGCC
ACGGGACTGGGGGATGAATACATCCAATACTTGAACGAGATAGTACCAGG
GCATTCCTCGGAAGCCGTGATTGCTGTACTGCTGACCATATTTGGGGTTG
CTCACAGTGGGCTTGCCAGCCTTAGGCCTTGGGCAGAGGAGGTGATTGGC
GCAAGGgtaaggcttgattttcccgaaccctatttagttgtcttttagac
aacaaaatttgtcgtgacgattttctcctttccctccattctcctccttg
gtttctttcccctctcttcccactagGCATGGCGTGTGATCTTTGCCTTG
GTCAGCTTGCCTCTGGCCAGCTCGGCTATCATATACTTCATCAATCATCG
CTACGATGGAGCACAGTTGTGGGACTTAAAGCTTGTACCCGgtacgtgtc
tgtcgacatgcgcgtgtttgagagagagagagagagagagtgtgtgtgtg
tgtgagaagctggcatgtggcatttgtgcgtttgtgttgtatttcggtgt
gggtggtttgtaagttaggcagctcatcaagggtggtagaggtggcattt
gtgcgtttgttgttgtgtctttgtgtacatgcttcgttcatatcgaacca
tccggtgacaaatcatatctgaatctaattcccctcccgccctcgtccct
ccctccctcctcccgccctcgtcccttcgcctacagGCGCGCACGAGTTT
GTCTGGATCATCTCGTTTATCTCATTTCTTTTCCTCTACCCCTCCACCTT
CAACCTTCTCGAAATCGCCGCCGTCGAGAAGCCTAAGCTGCACATGTGGG
CCACGGGTATCATGCGTATCACCCGgtccgtaccgcccctccccctcttt
cgtcctttactacacccttcccatgacatgatcaagctgtatgtggtgct
gagtatataattttctcaatgtgcacattgaaatcttacattcattttat
tcttcctgttatcacctttctctctttccctccttcggttccttcctctt
tgacagACATCCTCAAATGGTGGGACAAGGGCTATGGTGTGCAGCACATA
CGCTCTGGATGGGTAATTCCTTTGTGTTGGTGGCCTCAGCATTCTTGATG
GCACATCATTTGTTTGGgtgaagaaagagggtgggagggaggggtggagg
gaagggaagtgagagaggtagaaaaggggaggacagagagagtaaaaatc
ttgagcatcggccttcaaacttcaatgcaaagccaactacacacttactt
tttttcttccttaacctcacgcccacagTGTCTGGAATGGTGACCGTCGT
CTGCGGGACAAGTACGGCGATGAGGTTATGGAAGCCTTCGAGGAGCAAAC
CTCCGTCATGCCCTTCGCTGCCATTTTTCAAGGTCGGCAAGTCCTCCCCG
CGGATTACTGGAAGGAATTTGCCCGCTTGCCGTATGTCATTATCACTTTA
GGCACGATAGGGGCGTACTTGGCTCATCCTTTCATGCAGGCGGGGAGTTG
GACATTGCATTGGTGA
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protein sequence of NO24G01560.1

>NO24G01560.1-protein ID=NO24G01560.1-protein|Name=NO24G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MAAHRGAILLAFAAVASFYPVAAFVHLSPARSGQALALLAARHNPVLPSA
SMSRPSSLSALLRSGATQSLPFGQQRAGSLSSIIMHSTESGGGNLVGEDA
ASFDLKEQSLKNWGIFTLLLVTVLGALFVAWINPATGLGDEYIQYLNEIV
PGHSSEAVIAVLLTIFGVAHSGLASLRPWAEEVIGARAWRVIFALVSLPL
ASSAIIYFINHRYDGAQLWDLKLVPGAHEFVWIISFISFLFLYPSTFNLL
EIAAVEKPKLHMWATGIMRITRHPQMVGQGLWCAAHTLWMGNSFVLVASA
FLMAHHLFGVWNGDRRLRDKYGDEVMEAFEEQTSVMPFAAIFQGRQVLPA
DYWKEFARLPYVIITLGTIGAYLAHPFMQAGSWTLHW*
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Synonyms
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