NO24G01540, NO24G01540 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO24G01540 vs. NCBI_GenBank
Match: EWM24362.1 (small gtp-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 327.0 bits (837), Expect = 9.000e-86 Identity = 181/339 (53.39%), Postives = 222/339 (65.49%), Query Frame = 0 Query: 105 MDAETPQTRLLRPPSLLQAYCLHHFIPTLAYRMDLKKARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLDILALLPPGSLVVTDSQAVDIVHSWT------------SHKPVDITTFSIIMIQHMSGGKLQTFIDGIERLVELEGRKGEEGREG--GRKARVLIAEACNHVRIPEACDDIGLIQLPKAIKKAFANVSLQIDHAYGREFPFEGLSKREGVREGGWEEGRGIYDVVVHCGGCMIDRQKIRARMEECEEAGVAMTNYGLLLAYAAGPAAFLRAIKPFNVLVPPRLLKHALALEKKKRERTGDDADEGETQGGNDGAQSCMISACAL 430 MDAETP TRLLRP +LLQA+CLHH+IPT+AYRM+L KAR+ FL +L+LLPPGSLVVTDSQA+D+VH+WT KPVDITTFSI+MIQHMSGG+L F++G+ RLVE+E EE R+ G++ARVLIAEACNHVRIPEACDDIG +QLP+A+++AF ++ I HAYGREFP++ L ++GR YDVVVHCGGCMIDRQK+RARMEEC + GVA TNYGLLLAYAA P A LRA++PF V +P L KHA +E+ D D G + + SC+ AL Sbjct: 1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARS----------FPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEME----EEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQAL-----------QDGR--YDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQ--------DGDVG--RRASKSGSSCLNPVSAL 302
BLAST of NO24G01540 vs. NCBI_GenBank
Match: XP_005855690.1 (small gtp-binding protein, partial [Nannochloropsis gaditana CCMP526] >EKU20670.1 small gtp-binding protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 281.2 bits (718), Expect = 5.600e-72 Identity = 151/266 (56.77%), Postives = 186/266 (69.92%), Query Frame = 0 Query: 178 FLDILALLPPGSLVVTDSQAVDIVHSWT------------SHKPVDITTFSIIMIQHMSGGKLQTFIDGIERLVELEGRKGEEGREG--GRKARVLIAEACNHVRIPEACDDIGLIQLPKAIKKAFANVSLQIDHAYGREFPFEGLSKREGVREGGWEEGRGIYDVVVHCGGCMIDRQKIRARMEECEEAGVAMTNYGLLLAYAAGPAAFLRAIKPFNVLVPPRLLKHALALEKKKRERTGDDADEGETQGGNDGAQSCMISACAL 430 FL +L+LLPPGSLVVTDSQA+D+VH+WT KPVDITTFSI+MIQHMSGG+L F++G+ RLVE+E EE R+ G++ARVLIAEACNHVRIPEACDDIG +QLP+A+++AF ++ I HAYGREFP++ L ++GR YDVVVHCGGCMIDRQK+RARMEEC + GVA TNYGLLLAYAA P A LRA++PF V +P L KHA +E+ D D G + + SC+ CAL Sbjct: 7 FLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEME----EEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQAL-----------QDGR--YDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQ--------DGDVG--RRASKSGSSCLNPVCAL 245
BLAST of NO24G01540 vs. NCBI_GenBank
Match: ANM86879.1 (HydF [Stygiella incarcerata] >ANM86740.1 HydF [Stygiella incarcerata]) HSP 1 Score: 225.7 bits (574), Expect = 2.800e-55 Identity = 122/302 (40.40%), Postives = 175/302 (57.95%), Query Frame = 0 Query: 86 PLLPLQYHQGNKLVLMNIPMDAETPQTRLLRPPSLLQAYCLHHFIPTLAYRMDLKKARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLDILALLPPGSLVVTDSQAVDIVHSWTSH---KPVDITTFSIIMIQHMSGGKLQTFIDGIERLVELEGRKGEEGREGGRKARVLIAEACNHVRIPEACDDIGLIQLPKAIKKAFANVSLQIDHAYGREFPFEGLSKREGVREGGWEEGRGIYDVVVHCGGCMIDRQKIRARMEECEEAGVAMTNYGLLLAYAAGPAAFLRAIKPFNVLV 385 PLLP +K V MN+PMDAETP RLLRP ++ Q +CL +F TLAYRMDL+ R F+D + + P SL+VTDSQA+D+ WT+ + V++TTFSI+MI HM+GG L+ F+DG++ L ++ +K ++LIAEACNH RI + C+DIG +Q+P +KK F ++++HA+GREFP L + Y +V+HCGGCMID QK+ ARM++C EAG+ +TNYGLLL+Y P A + ++P+ + + Sbjct: 245 PLLPSSCLGKDKTVFMNVPMDAETPSGRLLRPQAMTQEFCLRNFTTTLAYRMDLQAGR--------------------NKDDDGVREAERVRFVDAVTKVKP-SLIVTDSQAMDLCAPWTTDVNMRDVELTTFSIMMINHMAGGNLKVFVDGLKALKSID-----------KKKKILIAEACNHNRITDICEDIGTVQIPNKLKKLFGE-DVKLEHAFGREFPELKLDE---------------YQLVIHCGGCMIDSQKMMARMQDCLEAGIPITNYGLLLSYFQSPQALAKVLRPWGLSI 498
BLAST of NO24G01540 vs. NCBI_GenBank
Match: PRW59379.1 (iron hydrogenase assembly [Chlorella sorokiniana]) HSP 1 Score: 219.2 bits (557), Expect = 2.600e-53 Identity = 140/349 (40.11%), Postives = 184/349 (52.72%), Query Frame = 0 Query: 39 LPSFTADFTSPNAGKALALHLAHTLHQSTFSSTVTAAAAAATGDEDCPLLPLQYHQGNKLVLMNIPMDAETPQTRLLRPPSLLQAYCLHHFIPTLAYRMDLKKARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLDILALLPPGSLVVTDSQAVDIVHSW-----TSHKPVDITTFSIIMIQHMSGGKLQTFIDGIERLVELEGRKGEEGREGGRKARVLIAEACNHVRIPEACDDIGLIQLPKAIKKAFANVSLQIDHAYGREFPFEGLSKREGVREGGWEEGRGIYDVVVHCGGCMIDRQKIRARMEECEEAGVAMTNYGLLLAYAAGPAAFLRAIKPFNV 383 LP A A + L L+H + + AAAAAA E LP QY +V +NIPMDAETP RLLRP +L+Q + H+ TLAYRM+L AR+ L L P L+VTDSQAVDI+H W T + V TTFSI MI S G+L F+ G++ L + G+ +VL+AEACNH RI + C+DIG++Q+P + A + ++HA+GREFP EGG G G Y + +HCGGCMID+QKIRAR+ + +EAGV +TNYGLLL+YA PAA RA+KP+ + Sbjct: 691 LPRLQAVLNPSGAIPSCQLELSHESSSDQLAGFLQAAAAAAAQHEVPHSLPQQYLSEEAMVFLNIPMDAETPSLRLLRPQALVQEEAIRHWASTLAYRMNLAHARSSDPALVEAERARFLRA------------------LQPLLAHPGPKLIVTDSQAVDILHPWTLDPVTGEELVPFTTFSIAMIHRQSRGQLPLFVQGLDAFKRL--KAGD---------KVLVAEACNHNRITDICNDIGMVQIPAKV-AAQGGRGVTVEHAFGREFP------ELDAPEGG---GLGSYALAIHCGGCMIDQQKIRARILDLQEAGVPVTNYGLLLSYAHSPAAVERALKPWGL 1000
BLAST of NO24G01540 vs. NCBI_GenBank
Match: ORX81238.1 (P-loop containing nucleoside triphosphate hydrolase protein [Anaeromyces robustus]) HSP 1 Score: 217.2 bits (552), Expect = 1.000e-52 Identity = 126/298 (42.28%), Postives = 166/298 (55.70%), Query Frame = 0 Query: 86 PLLPLQYHQGNKLVLMNIPMDAETPQTRLLRPPSLLQAYCLHHFIPTLAYRMDLKKARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLDILALLPPGSLVVTDSQAVDIVHSWTS---HKPVDITTFSIIMIQHMSGGKLQTFIDGIERLVELEGRKGEEGREGGRKARVLIAEACNHVRIPEACDDIGLIQLPKAIKKAFANVSLQIDHAYGREFPFEGLSKREGVREGGWEEGRGIYDVVVHCGGCMIDRQKIRARMEECEEAGVAMTNYGLLLAYAAGPAAFLRAIKPF 381 PLLP +K V +NIPMDAETP RLLRP S Q +CL H+ T AYRMDL K R+ F D ++ + P S+V+TDSQA+D+V W + V +TTFSI+MI M+ G+L FI G+E+L L+ +++LI+EACNH R+ + C+DIG Q+P ++K+F N S+ IDHA+GREFP E L + Y +VVHCGGCMID+QKI AR+++C E V +TNYGLLL Y P A R KPF Sbjct: 243 PLLPQHVLGSDKTVFLNIPMDAETPGGRLLRPQSKCQEFCLSHYTSTFAYRMDLVKGRS---------------------KDTKVSDAEKKRFQDAISKVKP-SIVITDSQAMDLVGKWVTPDKFPDVQLTTFSIMMINQMTDGQLPRFIQGLEKLKSLK-----------PNSKILISEACNHNRLTDICEDIGTKQIPDKLRKSFGN-SIVIDHAFGREFPNEKLKE---------------YSLVVHCGGCMIDKQKICARLDDCIENNVPITNYGLLLTYLNSPKALKRVTKPF 491
BLAST of NO24G01540 vs. NCBI_GenBank
Match: CEM24053.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 212.6 bits (540), Expect = 2.500e-51 Identity = 120/305 (39.34%), Postives = 175/305 (57.38%), Query Frame = 0 Query: 83 EDCPLLPLQYHQGNKLVLMNIPMDAETPQTRLLRPPSLLQAYCLHHFIPTLAYRMDLKKARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLDILALLPPGSLVVTDSQAVDIVHSWT----SHKP-VDITTFSIIMIQHMSGGKLQTFIDGIERLVELEGRKGEEGREGGRKARVLIAEACNHVRIPEACDDIGLIQLPKAIKKAFANVSLQIDHAYGREFPFEGLSKREGVREGGWEEGRGIYDVVVHCGGCMIDRQKIRARMEECEEAGVAMTNYGLLLAYAAGPAAFLRAIKPFNV 383 +D P +P Y + + +NIPMDAETP RLLRP +++Q + H+ T+AYRMDL KAR+ +L L++TDSQA+DIVH WT +++P +DITTFSI ++ SGG+L TF++G+ER + ++G+ RVL+AE CNH RI + C+DI +QLP I +A S+ +DHA+GREFP E ++G G Y +V+HCGGC ID+QK++AR+++ E GV +TN+GLLL+Y A P A RA++P+ + Sbjct: 719 DDLPCVPESYLTADSVFFLNIPMDAETPAGRLLRPQAMVQESIIRHYGTTVAYRMDLAKARSSDPAEVQEEKSRFLKMLNM-----------------VLQQTAGPKLLITDSQAMDIVHPWTLDPVTNRPLIDITTFSIALLHRQSGGQLPTFVEGLERFKHI--KQGD---------RVLVAEGCNHNRITQLCNDIATVQLPGHI-RAQGGASIAVDHAFGREFP---------DIEDQSDKGLGAYSLVIHCGGCYIDKQKVQARVDDLREMGVPVTNFGLLLSYVAAPEAVDRALQPWGL 985
BLAST of NO24G01540 vs. NCBI_GenBank
Match: PSC71854.1 (iron hydrogenase assembly [Micractinium conductrix]) HSP 1 Score: 211.5 bits (537), Expect = 5.500e-51 Identity = 132/321 (41.12%), Postives = 179/321 (55.76%), Query Frame = 0 Query: 67 TFSSTVTAAAAAATGDEDCPLLPLQYHQGNKLVLMNIPMDAETPQTRLLRPPSLLQAYCLHHFIPTLAYRMDLKKARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLDILALLPPGSLVVTDSQAVDIVHSW-----TSHKPVDITTFSIIMIQHMSGGKLQTFIDGIERLVELEGRKGEEGREGGRKARVLIAEACNHVRIPEACDDIGLIQLPKAIKKAFANVSLQIDHAYGREFPFEGLSKREGVREGGWEEGRGIYDVVVHCGGCMIDRQKIRARMEECEEAGVAMTNYGLLLAYAAGPAAFLRAIKPFNV 383 + + T A AAAA + LP ++ + LV +NIPMDAETP RLLRP +L+Q + H+ TLAYRM+L AR+ +LA P ++VTDSQAVDI+H W T + V TTFSI MI S G+L F+ G+E +L + G+ RVL+AEACNH RI + C+DIG++Q+P + +A + ++HA+GREFP E EGG G Y + +HCGGCMID+QKIRAR+ + +EAGV +TNYGLLL+YA PAA RA+KP+ + Sbjct: 720 SLAGTFQAVAAAARQHDTPRSLPDEFLSEDSLVFLNIPMDAETPSLRLLRPQALVQEEAIRHYAATLAYRMNLAHARS-----------------SDPALVERERARFLRALQPVLAHTGP-KIIVTDSQAVDILHPWTLDPATGEELVPFTTFSIAMIHRQSRGQLPLFVQGLEAFKQL--KAGD---------RVLVAEACNHNRITDICNDIGMVQIPDKV-EAQGGRGVVVEHAFGREFP-------ELDEEGG---GLASYALAIHCGGCMIDQQKIRARLLDLKEAGVPVTNYGLLLSYAHSPAALERAMKPWGL 1000
BLAST of NO24G01540 vs. NCBI_GenBank
Match: ORX49704.1 (P-loop containing nucleoside triphosphate hydrolase protein [Piromyces finnis]) HSP 1 Score: 208.4 bits (529), Expect = 4.600e-50 Identity = 123/298 (41.28%), Postives = 161/298 (54.03%), Query Frame = 0 Query: 86 PLLPLQYHQGNKLVLMNIPMDAETPQTRLLRPPSLLQAYCLHHFIPTLAYRMDLKKARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLDILALLPPGSLVVTDSQAVDIVHSWTS---HKPVDITTFSIIMIQHMSGGKLQTFIDGIERLVELEGRKGEEGREGGRKARVLIAEACNHVRIPEACDDIGLIQLPKAIKKAFANVSLQIDHAYGREFPFEGLSKREGVREGGWEEGRGIYDVVVHCGGCMIDRQKIRARMEECEEAGVAMTNYGLLLAYAAGPAAFLRAIKPF 381 PLLP +K V +NIPMDAETP RLLRP S Q +CL HF T AYRMDL K R+ F D + + P S+++TDSQA+D+V W S V +TTFSI+MI M+ G+L FI G+E L L+ ++LI+EACNH R+ + C+DIG Q+P +K+ N S+ IDHA+GREFP + L + Y +VVHCGGCMID+QK+ AR+++C E + +TNYGLLL Y P A R KPF Sbjct: 237 PLLPQHVLGPDKTVFLNIPMDAETPGGRLLRPQSKCQEFCLSHFTSTYAYRMDLIKGRS---------------------NDSNVSETEKKRFQDAIERIKP-SIIITDSQAMDLVGRWVSPDKFPNVQLTTFSIMMINQMTDGQLPKFIKGLEVLKSLKSND-----------KILISEACNHNRLTDICEDIGTKQIPDKLKRKLGN-SIVIDHAFGREFPSKELKE---------------YSLVVHCGGCMIDKQKMCARLDDCIENNIPITNYGLLLTYLNSPKALKRVTKPF 485
BLAST of NO24G01540 vs. NCBI_GenBank
Match: AHH85811.1 (FeFe-hydrogenase assembly protein [Tetraselmis sp. GSL018]) HSP 1 Score: 207.6 bits (527), Expect = 7.900e-50 Identity = 124/305 (40.66%), Postives = 167/305 (54.75%), Query Frame = 0 Query: 86 PLLPLQYHQGNKLVLMNIPMDAETPQTRLLRPPSLLQAYCLHHFIPTLAYRMDLKKARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLDILALLP-----PGSLVVTDSQAVDIVHSWT----SHKP-VDITTFSIIMIQHMSGGKLQTFIDGIERLVELEGRKGEEGREGGRKARVLIAEACNHVRIPEACDDIGLIQLPKAIKKAFANVSLQIDHAYGREFPFEGLSKREGVREGGWEEGRGIYDVVVHCGGCMIDRQKIRARMEECEEAGVAMTNYGLLLAYAAGPAAFLRAIKPF 381 P LP +Y ++ +NIPMDAETP TRLLRP +L+Q + HF T+AYRMDL AR+ + AL P L+VTDSQAVDI+H WT ++KP + TTFSI MI +SGG+LQ FIDG+ L L +EG VL+AEACNH RI E C+DIG++Q+P+A+KK ++HA+GR++ + EG G + + +HCG CMID QK+RARM + +EAGV + NYGL L+Y A R+I+P+ Sbjct: 732 PSLPKKYLSSESVIFLNIPMDAETPSTRLLRPQALVQEEAIRHFATTIAYRMDLNAARSDDPAKVEKERSRF-----------------------MRALQPVLDHDGPKLIVTDSQAVDILHPWTLEPETNKPMMPFTTFSIAMINKISGGRLQDFIDGVSALDSL--------KEGD---HVLVAEACNHNRITENCNDIGMVQIPQALKKIVGGKGPVVEHAFGRDY-------SSVAEDSSDPEGLGRFKLAIHCGACMIDHQKLRARMLDFQEAGVPVVNYGLFLSYVQSRFALDRSIEPW 995
BLAST of NO24G01540 vs. NCBI_GenBank
Match: ORY37143.1 (P-loop containing nucleoside triphosphate hydrolase protein [Neocallimastix californiae]) HSP 1 Score: 207.6 bits (527), Expect = 7.900e-50 Identity = 120/299 (40.13%), Postives = 160/299 (53.51%), Query Frame = 0 Query: 86 PLLPLQYHQGNKLVLMNIPMDAETPQTRLLRPPSLLQAYCLHHFIPTLAYRMDLKKARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLDILALLPPGSLVVTDSQAVDIVHSWTSHKP---VDITTFSIIMIQHMSGGKLQTFIDGIERLVELEGRKGEEGREGGRKARVLIAEACNHVRIPEACDDIGLIQLPKAIKKAFANVSLQIDHAYGREFPFEGLSKREGVREGGWEEGRGIYDVVVHCGGCMIDRQKIRARMEECEEAGVAMTNYGLLLAYAAGPAAFLRAIKPFN 382 PLLP +K V +NIPMDAETP RLLRP S Q +CL HF T AYRMDL K R+ S+V+TDSQA+D+V W S + V +TTFSI+MI M+ G+L FI G+ L ++ +++LI+EACNH R+ + C+DIG Q+P ++K+ + S+ IDHA+GREFP++ L + Y +VVHCGGCMID+QKI AR+E+C E + +TNYGLLL Y P A R KPF+ Sbjct: 242 PLLPQHVLGPDKTVFLNIPMDAETPGGRLLRPQSKCQEFCLSHFTSTFAYRMDLAKGRSKDKKVKP-------------------------------------SIVITDSQAMDLVGRWVSPQKFPNVQLTTFSIMMINQMTDGQLPQFIKGLNTLKTMK-----------PNSKILISEACNHDRLTDICEDIGTKQIPDKLRKSLGD-SIVIDHAFGREFPYDKLKE---------------YSLVVHCGGCMIDKQKICARLEDCIENNIPITNYGLLLTYLNSPKALKRVTKPFS 476 The following BLAST results are available for this feature:
BLAST of NO24G01540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G01540 ID=NO24G01540|Name=NO24G01540|organism=Nannochloropsis oceanica|type=gene|length=1489bpback to top protein sequence of NO24G01540.1 >NO24G01540.1-protein ID=NO24G01540.1-protein|Name=NO24G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bpback to top Synonyms
Publications
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