NO24G01540.1, NO24G01540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01540.1
Unique NameNO24G01540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1335
Alignment locationchr24:408466..409954 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:408466..409954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO24G01540.1 vs.
Match: EWM24362.1 (small gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 347.8 bits (891), Expect = 4.900e-92
Identity = 191/339 (56.34%), Postives = 231/339 (68.14%), Query Frame = 0 
Query:  105 MDAETPQTRLLRPPSLLQAYCLHHFIPTLAYRMDLKKARATAAAAAAVVSAPSLSPISSQQHRSKDQEEEKRKFLDILALLPPGSLVVTDSQAVDIVHSWTS------------HKPVDITTFSIIMIQHMSGGKLQTFIDGIERLVELEGRKGEEGREG--GRKARVLIAEACNHVRIPEACDDIGLIQLPKAIKKAFANVSLQIDHAYGREFPFEGLSKREGVREGGWEEGRGIYDVVVHCGGCMIDRQKIRARMEECEEAGVAMTNYGLLLAYAAGPAAFLRAIKPFNVLVPPRLLKHALALEKKKRERTGDDADEGETQGGNDGAQSCMISACAL 430
            MDAETP TRLLRP +LLQA+CLHH+IPT+AYRM+L KAR          S P  SP  S        EEEK KFL +L+LLPPGSLVVTDSQA+D+VH+WT              KPVDITTFSI+MIQHMSGG+L  F++G+ RLVE+E    EE R+   G++ARVLIAEACNHVRIPEACDDIG +QLP+A+++AF ++   I HAYGREFP++ L           ++GR  YDVVVHCGGCMIDRQK+RARMEEC + GVA TNYGLLLAYAA P A LRA++PF V +P  L KHA  +E+        D D G  +  +    SC+    AL
Sbjct:    1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKAR----------SFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEME----EEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQAL-----------QDGR--YDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQ--------DGDVG--RRASKSGSSCLNPVSAL 302
The following BLAST results are available for this feature:
BLAST of NO24G01540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24362.14.900e-9256.34small gtp-binding protein [Nannochloropsis gaditan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01540NO24G01540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01540.1NO24G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01540.1.cds1NO24G01540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01540.1.cds2NO24G01540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01540.1 ID=NO24G01540.1|Name=NO24G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp
ATGCATCCGAGCAGCAGCAACAATAGCAAGATCAACAACAACAGCAGCTG
CAGCAGCAATGGTTTTAAGTGCGGCACCAGCATCAGCACAGAGCACCCTC
CTCCCAACCTCCTCCTCCCTTCCTTTACTGCGGACTTCACCTCCCCCAAT
GCCGGCAAAGCCCTCGCTCTCCACCTCGCCCATACCCTCCATCAATCTAC
CTTCTCCTCAACAGTAACAGCAGCAGCAGCAGCAGCGACAGGGGATGAAG
ACTGTCCTCTTCTTCCCCTTCAGTACCACCAGGGGAACAAGCTCGTTTTG
ATGAACATTCCCATGGACGCCGAAACACCCCAAACACGGCTCTTGCGTCC
TCCATCTTTGCTGCAAGCTTACTGTCTGCATCATTTTATACCCACCTTGG
CCTACCGGATGGACTTGAAAAAAGCCCGTGCTACTGCTGCTGCTGCTGCT
GCTGTTGTTTCCGCCCCTTCTTTATCTCCTATATCTTCACAACAACATCG
ATCGAAGGATCAGGAAGAGGAGAAAAGGAAGTTTTTAGATATCCTCGCCC
TCCTCCCCCCGGGAAGCTTGGTGGTCACAGACTCCCAAGCCGTCGACATC
GTCCACAGCTGGACTTCACACAAGCCCGTGGACATTACTACATTTAGCAT
CATCATGATCCAACACATGAGCGGTGGAAAACTTCAGACCTTTATTGATG
GGATCGAACGACTGGTAGAGCTCGAAGGAAGGAAAGGGGAAGAAGGAAGG
GAGGGAGGAAGGAAAGCCCGGGTGCTGATAGCCGAGGCCTGTAATCATGT
CAGAATCCCAGAGGCGTGTGACGATATTGGTTTAATTCAATTACCCAAAG
CTATTAAAAAAGCGTTCGCGAACGTTTCCCTTCAGATCGATCACGCGTAT
GGCCGTGAATTTCCATTCGAGGGCTTGAGCAAGCGAGAAGGAGTGAGAGA
GGGAGGATGGGAAGAAGGAAGAGGGATATATGATGTGGTAGTGCATTGTG
GGGGGTGCATGATCGATCGGCAGAAGATAAGGGCACGGATGGAAGAGTGT
GAGGAGGCGGGAGTGGCGATGACGAATTATGGGTTGTTGTTAGCGTATGC
GGCAGGACCTGCCGCATTTTTACGAGCGATCAAGCCTTTCAATGTACTAG
TGCCACCGAGATTATTGAAGCATGCGTTGGCATTGGAAAAGAAGAAGAGG
GAGAGGACGGGTGATGATGCGGATGAAGGGGAGACACAGGGAGGGAACGA
TGGAGCACAATCGTGCATGATTTCGGCTTGTGCGTTATGTCTGGGGGATT
ACGGTGGTGGTGGTGCGACGAAAAAGGGTATTTGA
back to top

protein sequence of NO24G01540.1

>NO24G01540.1-protein ID=NO24G01540.1-protein|Name=NO24G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MHPSSSNNSKINNNSSCSSNGFKCGTSISTEHPPPNLLLPSFTADFTSPN
AGKALALHLAHTLHQSTFSSTVTAAAAAATGDEDCPLLPLQYHQGNKLVL
MNIPMDAETPQTRLLRPPSLLQAYCLHHFIPTLAYRMDLKKARATAAAAA
AVVSAPSLSPISSQQHRSKDQEEEKRKFLDILALLPPGSLVVTDSQAVDI
VHSWTSHKPVDITTFSIIMIQHMSGGKLQTFIDGIERLVELEGRKGEEGR
EGGRKARVLIAEACNHVRIPEACDDIGLIQLPKAIKKAFANVSLQIDHAY
GREFPFEGLSKREGVREGGWEEGRGIYDVVVHCGGCMIDRQKIRARMEEC
EEAGVAMTNYGLLLAYAAGPAAFLRAIKPFNVLVPPRLLKHALALEKKKR
ERTGDDADEGETQGGNDGAQSCMISACALCLGDYGGGGATKKGI*
back to top

mRNA from alignment at chr24:408466..409954+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01540.1 ID=NO24G01540.1|Name=NO24G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1489bp|location=Sequence derived from alignment at chr24:408466..409954+ (Nannochloropsis oceanica)
ATGCATCCGAGCAGCAGCAACAATAGCAAGATCAACAACAACAGCAGCTG
CAGCAGCAATGGTTTTAAGTGCGGCACCAGCATCAGCACAGAGCACCCTC
CTCCCAACCTCCTCCTCCCTTCCTTTACTGCGGACTTCACCTCCCCCAAT
GCCGGCAAAGCCCTCGCTCTCCACCTCGCCCATACCCTCCATCAATCTAC
CTTCTCCTCAACAGTAACAGCAGCAGCAGCAGCAGCGACAGGGGATGAAG
ACTGTCCTCTTCTTCCCCTTCAGTACCACCAGGGGAACAAGCTCGTTTTG
ATGAACATTCCCATGGACGCCGAAACACCCCAAACACGGCTCTTGCGTCC
TCCATCTTTGCTGCAAGCTTACTGTCTGCATCATTTTATACCCACCTTGG
CCTACCGGATGGACTTGAAAAAAGCCCGTGCTACTGCTGCTGCTGCTGCT
GCTGTTGTTTCCGCCCCTTCTTTATCTCCTATATCTTCACAACAACATCG
ATCGAAGGATCAGGAAGAGGAGAAAAGGAAGTTTTTAGATATCCTCGCCC
TCCTCCCCCCGGGAAGCTTGGTGGTCACAGACTCCCAAGCCGTCGACATC
GTCCACAGGTGAAGGGAGTTGGGGGGAGGGAGGGAGTCAGGGAGGGGGAG
TCAGAGGCAACGTTCTCGTCTCGATTGGTTGGGGCGTGGATCTAAGATAG
AAGAGCATTCTCCTCATCCAGCCTCTTTCGTCTTTCTTTCCATCCTTCCC
TGTCTTCCTTAGCTGGACTTCACACAAGCCCGTGGACATTACTACATTTA
GCATCATCATGATCCAACACATGAGCGGTGGAAAACTTCAGACCTTTATT
GATGGGATCGAACGACTGGTAGAGCTCGAAGGAAGGAAAGGGGAAGAAGG
AAGGGAGGGAGGAAGGAAAGCCCGGGTGCTGATAGCCGAGGCCTGTAATC
ATGTCAGAATCCCAGAGGCGTGTGACGATATTGGTTTAATTCAATTACCC
AAAGCTATTAAAAAAGCGTTCGCGAACGTTTCCCTTCAGATCGATCACGC
GTATGGCCGTGAATTTCCATTCGAGGGCTTGAGCAAGCGAGAAGGAGTGA
GAGAGGGAGGATGGGAAGAAGGAAGAGGGATATATGATGTGGTAGTGCAT
TGTGGGGGGTGCATGATCGATCGGCAGAAGATAAGGGCACGGATGGAAGA
GTGTGAGGAGGCGGGAGTGGCGATGACGAATTATGGGTTGTTGTTAGCGT
ATGCGGCAGGACCTGCCGCATTTTTACGAGCGATCAAGCCTTTCAATGTA
CTAGTGCCACCGAGATTATTGAAGCATGCGTTGGCATTGGAAAAGAAGAA
GAGGGAGAGGACGGGTGATGATGCGGATGAAGGGGAGACACAGGGAGGGA
ACGATGGAGCACAATCGTGCATGATTTCGGCTTGTGCGTTATGTCTGGGG
GATTACGGTGGTGGTGGTGCGACGAAAAAGGGTATTTGA
back to top

Coding sequence (CDS) from alignment at chr24:408466..409954+

>NO24G01540.1 ID=NO24G01540.1|Name=NO24G01540.1|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at chr24:408466..409954+ (Nannochloropsis oceanica)
ATGCATCCGAGCAGCAGCAACAATAGCAAGATCAACAACAACAGCAGCTG
CAGCAGCAATGGTTTTAAGTGCGGCACCAGCATCAGCACAGAGCACCCTC
CTCCCAACCTCCTCCTCCCTTCCTTTACTGCGGACTTCACCTCCCCCAAT
GCCGGCAAAGCCCTCGCTCTCCACCTCGCCCATACCCTCCATCAATCTAC
CTTCTCCTCAACAGTAACAGCAGCAGCAGCAGCAGCGACAGGGGATGAAG
ACTGTCCTCTTCTTCCCCTTCAGTACCACCAGGGGAACAAGCTCGTTTTG
ATGAACATTCCCATGGACGCCGAAACACCCCAAACACGGCTCTTGCGTCC
TCCATCTTTGCTGCAAGCTTACTGTCTGCATCATTTTATACCCACCTTGG
CCTACCGGATGGACTTGAAAAAAGCCCGTGCTACTGCTGCTGCTGCTGCT
GCTGTTGTTTCCGCCCCTTCTTTATCTCCTATATCTTCACAACAACATCG
ATCGAAGGATCAGGAAGAGGAGAAAAGGAAGTTTTTAGATATCCTCGCCC
TCCTCCCCCCGGGAAGCTTGGTGGTCACAGACTCCCAAGCCGTCGACATC
GTCCACAGCTGGACTTCACACAAGCCCGTGGACATTACTACATTTAGCAT
CATCATGATCCAACACATGAGCGGTGGAAAACTTCAGACCTTTATTGATG
GGATCGAACGACTGGTAGAGCTCGAAGGAAGGAAAGGGGAAGAAGGAAGG
GAGGGAGGAAGGAAAGCCCGGGTGCTGATAGCCGAGGCCTGTAATCATGT
CAGAATCCCAGAGGCGTGTGACGATATTGGTTTAATTCAATTACCCAAAG
CTATTAAAAAAGCGTTCGCGAACGTTTCCCTTCAGATCGATCACGCGTAT
GGCCGTGAATTTCCATTCGAGGGCTTGAGCAAGCGAGAAGGAGTGAGAGA
GGGAGGATGGGAAGAAGGAAGAGGGATATATGATGTGGTAGTGCATTGTG
GGGGGTGCATGATCGATCGGCAGAAGATAAGGGCACGGATGGAAGAGTGT
GAGGAGGCGGGAGTGGCGATGACGAATTATGGGTTGTTGTTAGCGTATGC
GGCAGGACCTGCCGCATTTTTACGAGCGATCAAGCCTTTCAATGTACTAG
TGCCACCGAGATTATTGAAGCATGCGTTGGCATTGGAAAAGAAGAAGAGG
GAGAGGACGGGTGATGATGCGGATGAAGGGGAGACACAGGGAGGGAACGA
TGGAGCACAATCGTGCATGATTTCGGCTTGTGCGTTATGTCTGGGGGATT
ACGGTGGTGGTGGTGCGACGAAAAAGGGTATTTGA
back to top
Synonyms
Publications