NO24G01530, NO24G01530 (gene) Nannochloropsis oceanica

Overview
NameNO24G01530
Unique NameNO24G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1052
Alignment locationchr24:407376..408427 +

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Properties
Property NameValue
DescriptionSmall gtp-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:407376..408427 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR006073GTP_binding_domain
Homology
BLAST of NO24G01530 vs. NCBI_GenBank
Match: XP_005854540.1 (small gtp-binding protein [Nannochloropsis gaditana CCMP526] >EKU21822.1 small gtp-binding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 167.9 bits (424), Expect = 4.800e-38
Identity = 102/200 (51.00%), Postives = 133/200 (66.50%), Query Frame = 0
Query:   67 GLHRLLLGLVGEMNAGKSTVLNALTQQATSIVDATPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMREVDAALVVIEPFNK--AKVATQGMDEEEGRAGRRRVAETAVEEEKPVSPPSATAVAGAVAVGSARSLYVAGTAGKAAAGRTPVVPVACTASSASLPLLISLVRSMAKRRRPSMLIFNI 265
            GLHRLL+GLVGEMNAGKST LNALTQQATSIVDATPGTT+D+K A++E+HGLGP+KLLDTAG+DD G LG+KK+ +T+ A++E+D ALVVI+PF+K  +  ++Q   +  GR GRRR                     G   +G   S+         +A  TP    AC A  +SL LL SLV++M +R R +ML+FN+
Sbjct:  120 GLHRLLIGLVGEMNAGKSTCLNALTQQATSIVDATPGTTADVKAALLELHGLGPVKLLDTAGIDDVGALGEKKKERTYRALKEIDVALVVIDPFSKILSSSSSQRPYDGTGREGRRR-------------------DEGGGGIGEDMSI---------SAMATPSY-TACQADPSSLSLLSSLVQAMDRRGRRAMLVFNL 290          
BLAST of NO24G01530 vs. NCBI_GenBank
Match: OPL19397.1 (hypothetical protein AVO35_10960 [Candidatus Aegiribacteria bacterium MLS_C])

HSP 1 Score: 122.5 bits (306), Expect = 2.300e-24
Identity = 57/90 (63.33%), Postives = 77/90 (85.56%), Query Frame = 0
Query:   70 RLLLGLVGEMNAGKSTVLNALTQQATSIVDATPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMREVDAALVVIEP 160
            RL+LG+ G +NAGKST++N LTQQ TSIVD  PGTT+DIK+++MEIHGLGP+++LDTAG+D+  +LG+KKR KT  A+ EVD A++VI+P
Sbjct:    6 RLVLGIFGRINAGKSTLMNLLTQQETSIVDPDPGTTADIKSSLMEIHGLGPVRILDTAGLDEGCQLGEKKRRKTLSALEEVDLAILVIDP 95          
BLAST of NO24G01530 vs. NCBI_GenBank
Match: KZD17198.1 (hypothetical protein AO394_06065 [Candidatus Fermentibacter daniensis] >KZD18306.1 hypothetical protein AO396_10525 [Candidatus Fermentibacter daniensis])

HSP 1 Score: 121.3 bits (303), Expect = 5.100e-24
Identity = 61/120 (50.83%), Postives = 85/120 (70.83%), Query Frame = 0
Query:   68 LHRLLLGLVGEMNAGKSTVLNALTQQATSIVDATPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMREVDAALVVIEPFNKAKVATQGMDEEEGRAGRRRVAETAV 188
            + RL++G+ G +NAGKST++N LTQQ TSIVD TPGTT+DIK+A+MEIH LGP++LLDTAG+D+ G LG+KKR K + A+ + D AL+V++P       +  ++E  G   R      AV
Sbjct:    4 IDRLVIGIFGRINAGKSTLMNLLTQQETSIVDPTPGTTADIKSAVMEIHSLGPVRLLDTAGLDEGGILGEKKRGKGFAALEQCDIALLVVDPVQALLSGSLEVEESVGNFARMHGKALAV 123          
BLAST of NO24G01530 vs. NCBI_GenBank
Match: PIE52171.1 (hypothetical protein CSA37_07945 [Candidatus Fermentibacteria bacterium])

HSP 1 Score: 119.0 bits (297), Expect = 2.500e-23
Identity = 55/90 (61.11%), Postives = 74/90 (82.22%), Query Frame = 0
Query:   70 RLLLGLVGEMNAGKSTVLNALTQQATSIVDATPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMREVDAALVVIEP 160
            RL+LG+ G +NAGKST++N LTQQ TSIVD+ PGTT+DIK+++MEIH LGP+++LDTAG+D+   LG KKR K   A+ EVD AL+V++P
Sbjct:    6 RLVLGIFGRINAGKSTLMNLLTQQETSIVDSQPGTTADIKSSVMEIHSLGPVRILDTAGLDEASDLGGKKRKKALAALEEVDIALMVVDP 95          
BLAST of NO24G01530 vs. NCBI_GenBank
Match: XP_001309182.1 (small GTP-binding protein [Trichomonas vaginalis G3] >EAX96252.1 small GTP-binding protein, putative [Trichomonas vaginalis G3])

HSP 1 Score: 117.1 bits (292), Expect = 9.600e-23
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 0
Query:   68 LHRLLLGLVGEMNAGKSTVLNALTQQATSIVDATPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMREVDAALVVIEPFN 162
            L R  + +VG MNAGKST++NA+TQQ TSIVD+TPGTT+D K A+MEIH LGP KL+DTAG+D+ G LG KK  KT  A++E D  L VI+P N
Sbjct:   16 LPRTHISMVGFMNAGKSTIMNAITQQPTSIVDSTPGTTADTKVALMEIHALGPCKLIDTAGIDEKGTLGRKKYIKTESAVKESDVVLFVIDPTN 109          
BLAST of NO24G01530 vs. NCBI_GenBank
Match: KXZ55371.1 (hypothetical protein GPECTOR_3g5 [Gonium pectorale])

HSP 1 Score: 117.1 bits (292), Expect = 9.600e-23
Identity = 63/124 (50.81%), Postives = 88/124 (70.97%), Query Frame = 0
Query:   67 GLHRLLLGLVGEMNAGKSTVLNALTQQATSIVDATPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMREVDAALVVI--EPFNKAKVATQGMDEEEGRAGRRRVAETAVE 189
            G+ R+ +G+ G MNAGKST++NAL QQ   IVD+TPGTT+D+KT ++E+H LGP K+LDTAG+D+TG LGDKKR K    ++E D A+VV+  E   KA+ +  G +  +  +  RRV E AV+
Sbjct:  628 GVPRINIGVFGVMNAGKSTLVNALAQQEACIVDSTPGTTADVKTVLLELHDLGPAKVLDTAGLDETGVLGDKKRRKALNTLKECDVAVVVVDTETLRKAR-SVPGYNLTDILSWERRVVEQAVK 750          
BLAST of NO24G01530 vs. NCBI_GenBank
Match: OGE84172.1 (hypothetical protein A2Y39_06320, partial [Candidatus Delongbacteria bacterium GWF2_40_14])

HSP 1 Score: 116.7 bits (291), Expect = 1.300e-22
Identity = 55/107 (51.40%), Postives = 78/107 (72.90%), Query Frame = 0
Query:   68 LHRLLLGLVGEMNAGKSTVLNALTQQATSIVDATPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMREVDAALVVIEPFNKAKVATQGMDEEE 175
            + R+ +G+ G +N+GKST++N +TQQ TSIVD TPGTT+D+KT +MEIH LGP+K+ DTAG+D+ G LG+KK+ KT+ A++  D  LVVI   N   V    + E+E
Sbjct:    1 MERINIGIFGRVNSGKSTLMNLITQQETSIVDPTPGTTADVKTTVMEIHELGPVKIFDTAGIDEKGILGEKKKQKTFNALKRSDIVLVVINTNNSDIVKDNFLTEKE 107          
BLAST of NO24G01530 vs. NCBI_GenBank
Match: XP_001691465.1 (iron hydrogenase assembly protein [Chlamydomonas reinhardtii] >AAS92601.1 Fe-hydrogenase assembly protein [Chlamydomonas reinhardtii] >PNW82842.1 hypothetical protein CHLRE_06g296750v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 114.8 bits (286), Expect = 4.800e-22
Identity = 54/103 (52.43%), Postives = 74/103 (71.84%), Query Frame = 0
Query:   67 GLHRLLLGLVGEMNAGKSTVLNALTQQATSIVDATPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMREVDAALVVIEPFNKAKVATQG 170
            G+ R+ +G+ G MNAGKST++NAL QQ   IVD+TPGTT+D+KT ++E+H LGP KLLDTAG+D+ G LGDKKR K    ++E D A++V++    A     G
Sbjct:  672 GVPRINIGVFGVMNAGKSTLVNALAQQEACIVDSTPGTTADVKTVLLELHALGPAKLLDTAGLDEVGGLGDKKRRKALNTLKECDVAVLVVDTDTAAAAIKSG 774          
BLAST of NO24G01530 vs. NCBI_GenBank
Match: XP_004344717.1 (iron hydrogenase assembly protein [Acanthamoeba castellanii str. Neff] >ELR20974.1 iron hydrogenase assembly protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 114.4 bits (285), Expect = 6.200e-22
Identity = 56/119 (47.06%), Postives = 84/119 (70.59%), Query Frame = 0
Query:   68 LHRLLLGLVGEMNAGKSTVLNALTQQATSIVDATPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMREVDAALVVIEPFNKAKVATQGMDEEEGRAGRRRVAETA 187
            L R   G+ G MN+GKST++N ++QQ TSIVD+ PGTT+D K A+ME+H LGP+KL DT G+D+ G LG+KKR K ++ ++E +AA+VV+ PFN A +       +E  A +++  ++A
Sbjct:    4 LSRDCAGIFGAMNSGKSTLMNLISQQETSIVDSKPGTTADTKVALMEMHDLGPVKLFDTPGIDEEGLLGEKKRRKAFDVLKECNAAVVVVNPFNPASLEAARDVIQEASAKQKKGDDSA 122          
BLAST of NO24G01530 vs. NCBI_GenBank
Match: PNH10804.1 (GTPase Der [Tetrabaena socialis])

HSP 1 Score: 114.4 bits (285), Expect = 6.200e-22
Identity = 51/92 (55.43%), Postives = 73/92 (79.35%), Query Frame = 0
Query:   67 GLHRLLLGLVGEMNAGKSTVLNALTQQATSIVDATPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMREVDAALVVIE 159
            G+ R+ +G+ G MNAGKST++NAL+QQ   IVD+TPGTT+D+KT ++E+H LGP KLLDTAG+D+ G LG+KKR K    ++E D A++V++
Sbjct:  607 GVPRINIGVFGVMNAGKSTLVNALSQQEACIVDSTPGTTADVKTVLLELHALGPAKLLDTAGLDEAGALGEKKRRKALSTLKECDVAVIVVD 698          
The following BLAST results are available for this feature:
BLAST of NO24G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854540.14.800e-3851.00small gtp-binding protein [Nannochloropsis gaditan... [more]
OPL19397.12.300e-2463.33hypothetical protein AVO35_10960 [Candidatus Aegir... [more]
KZD17198.15.100e-2450.83hypothetical protein AO394_06065 [Candidatus Ferme... [more]
PIE52171.12.500e-2361.11hypothetical protein CSA37_07945 [Candidatus Ferme... [more]
XP_001309182.19.600e-2361.70small GTP-binding protein [Trichomonas vaginalis G... [more]
KXZ55371.19.600e-2350.81hypothetical protein GPECTOR_3g5 [Gonium pectorale... [more]
OGE84172.11.300e-2251.40hypothetical protein A2Y39_06320, partial [Candida... [more]
XP_001691465.14.800e-2252.43iron hydrogenase assembly protein [Chlamydomonas r... [more]
XP_004344717.16.200e-2247.06iron hydrogenase assembly protein [Acanthamoeba ca... [more]
PNH10804.16.200e-2255.43GTPase Der [Tetrabaena socialis][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002839NSK002839Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01530.1NO24G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|132847gene_7376Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01530.1NO24G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01530 ID=NO24G01530|Name=NO24G01530|organism=Nannochloropsis oceanica|type=gene|length=1052bp
ATGCCGCCACGCAGTTTCTTTATAGGGTCGTCTTCTTGGGGTTGGTACCG
GGAAGGGATGAGACATGGGCGATCACTACCCAGgtaagtttgggataggt
ggaaggctttctgttgaagaagagcggcattcgcatggtccttggcctca
tcaagctgccagggccgtacacgtccaaattgctcaggccatcacggcct
atatacgacacctccctcgacagAGCCTCGTCCTTGTCGCCCTTCTTCGC
ATCGCCTTGTGCGTCTTTGTGCTCCTGCAGCACCAATTCCTCCTCCTCGT
CCTCCTCCTTCAGCACCACTTCCTCCTCCTATTCTTCTGGTCTACACCGT
CTCCTCCTCGGCTTAGTCGGAGAGATGAATGCCGGCAAGTCCACAGTTCT
CAATGCCTTGACGCAACAAGCTACAAGTATCGTTGATGCCACGCCTGGGA
CAACATCAGATATCAAGACAGCCATCATGGAAATACATGGTTTGGGGCCG
ATCAAACTACTAGATACAGCAGGTGTGGATGACACGGGACGACTGGGAGA
TAAGAAGAGGAATAAGACATGGGAGGCAATGCGGGAAGTGGACGCGGCAC
TCGTGGTGATAGAGCCCTTTAACAAAGCAAAGGTGGCGACTCAAGGGATG
GATGAAGAGGAAGGACGTGCAGGAAGAAGAAGGGTGGCAGAAACGGCTGT
GGAGGAGGAGAAGCCCGTATCACCGCCATCAGCAACAGCAGTAGCAGGAG
CAGTAGCAGTCGGATCAGCACGATCACTATATGTGGCAGGGACAGCAGGA
AAAGCAGCTGCAGGGAGAACGCCAGTGGTGCCGGTTGCTTGTACAGCCTC
CTCTGCCTCCCTCCCTCTTCTCATTTCCCTTGTTCGAAGCATGGCCAAGC
GACGCCGTCCCTCCATGCTCATCTTCAATATTAAGAATGACGAACGAGAG
AAATTTATGCGGCGAATTGGCGATGGGAGGGAAGGGGGGGGGAGTGGAGG
TTGGTGGAGGAGTTGTGTGCGTCAATTGAGGGGGAAATTCGGAAGGCAGT
GA
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protein sequence of NO24G01530.1

>NO24G01530.1-protein ID=NO24G01530.1-protein|Name=NO24G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MPPRSFFIGSSSWGWYREGMRHGRSLPRASSLSPFFASPCASLCSCSTNS
SSSSSSFSTTSSSYSSGLHRLLLGLVGEMNAGKSTVLNALTQQATSIVDA
TPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMREV
DAALVVIEPFNKAKVATQGMDEEEGRAGRRRVAETAVEEEKPVSPPSATA
VAGAVAVGSARSLYVAGTAGKAAAGRTPVVPVACTASSASLPLLISLVRS
MAKRRRPSMLIFNIKNDEREKFMRRIGDGREGGGSGGWWRSCVRQLRGKF
GRQ*
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Synonyms
Publications