NO24G01530.1, NO24G01530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01530.1
Unique NameNO24G01530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length912
Alignment locationchr24:407376..408427 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:407376..408427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01530.1 vs.
Match: XP_005854540.1 (small gtp-binding protein [Nannochloropsis gaditana CCMP526]; EKU21822.1 small gtp-binding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 165.6 bits (418), Expect = 2.400e-37
Identity = 108/229 (47.16%), Postives = 143/229 (62.45%), Query Frame = 0 
Query:   38 SPCASLCSCSTNSSSSSSSFSTTSSSYSSGLHRLLLGLVGEMNAGKSTVLNALTQQATSIVDATPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMREVDAALVVIEPFNK--AKVATQGMDEEEGRAGRRRVAETAVEEEKPVSPPSATAVAGAVAVGSARSLYVAGTAGKAAAGRTPVVPVACTASSASLPLLISLVRSMAKRRRPSMLIFNI 265
            +PC SL +       S  S +T  +  S+GLHRLL+GLVGEMNAGKST LNALTQQATSIVDATPGTT+D+K A++E+HGLGP+KLLDTAG+DD G LG+KK+ +T+ A++E+D ALVVI+PF+K  +  ++Q   +  GR GRRR                     G   +G   S+    T    A          C A  +SL LL SLV++M +R R +ML+FN+
Sbjct:   98 TPCLSLLA-------SFFSSATAKAPPSTGLHRLLIGLVGEMNAGKSTCLNALTQQATSIVDATPGTTADVKAALLELHGLGPVKLLDTAGIDDVGALGEKKKERTYRALKEIDVALVVIDPFSKILSSSSSQRPYDGTGREGRRRDE-------------------GGGGIGEDMSISAMATPSYTA----------CQADPSSLSLLSSLVQAMDRRGRRAMLVFNL 290
The following BLAST results are available for this feature:
BLAST of NO24G01530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854540.12.400e-3747.16small gtp-binding protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01530NO24G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01530.1NO24G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01530.1.cds1NO24G01530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01530.1.cds2NO24G01530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01530.1 ID=NO24G01530.1|Name=NO24G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=912bp
ATGCCGCCACGCAGTTTCTTTATAGGGTCGTCTTCTTGGGGTTGGTACCG
GGAAGGGATGAGACATGGGCGATCACTACCCAGAGCCTCGTCCTTGTCGC
CCTTCTTCGCATCGCCTTGTGCGTCTTTGTGCTCCTGCAGCACCAATTCC
TCCTCCTCGTCCTCCTCCTTCAGCACCACTTCCTCCTCCTATTCTTCTGG
TCTACACCGTCTCCTCCTCGGCTTAGTCGGAGAGATGAATGCCGGCAAGT
CCACAGTTCTCAATGCCTTGACGCAACAAGCTACAAGTATCGTTGATGCC
ACGCCTGGGACAACATCAGATATCAAGACAGCCATCATGGAAATACATGG
TTTGGGGCCGATCAAACTACTAGATACAGCAGGTGTGGATGACACGGGAC
GACTGGGAGATAAGAAGAGGAATAAGACATGGGAGGCAATGCGGGAAGTG
GACGCGGCACTCGTGGTGATAGAGCCCTTTAACAAAGCAAAGGTGGCGAC
TCAAGGGATGGATGAAGAGGAAGGACGTGCAGGAAGAAGAAGGGTGGCAG
AAACGGCTGTGGAGGAGGAGAAGCCCGTATCACCGCCATCAGCAACAGCA
GTAGCAGGAGCAGTAGCAGTCGGATCAGCACGATCACTATATGTGGCAGG
GACAGCAGGAAAAGCAGCTGCAGGGAGAACGCCAGTGGTGCCGGTTGCTT
GTACAGCCTCCTCTGCCTCCCTCCCTCTTCTCATTTCCCTTGTTCGAAGC
ATGGCCAAGCGACGCCGTCCCTCCATGCTCATCTTCAATATTAAGAATGA
CGAACGAGAGAAATTTATGCGGCGAATTGGCGATGGGAGGGAAGGGGGGG
GGAGTGGAGGTTGGTGGAGGAGTTGTGTGCGTCAATTGAGGGGGAAATTC
GGAAGGCAGTGA
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protein sequence of NO24G01530.1

>NO24G01530.1-protein ID=NO24G01530.1-protein|Name=NO24G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MPPRSFFIGSSSWGWYREGMRHGRSLPRASSLSPFFASPCASLCSCSTNS
SSSSSSFSTTSSSYSSGLHRLLLGLVGEMNAGKSTVLNALTQQATSIVDA
TPGTTSDIKTAIMEIHGLGPIKLLDTAGVDDTGRLGDKKRNKTWEAMREV
DAALVVIEPFNKAKVATQGMDEEEGRAGRRRVAETAVEEEKPVSPPSATA
VAGAVAVGSARSLYVAGTAGKAAAGRTPVVPVACTASSASLPLLISLVRS
MAKRRRPSMLIFNIKNDEREKFMRRIGDGREGGGSGGWWRSCVRQLRGKF
GRQ*
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mRNA from alignment at chr24:407376..408427+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01530.1 ID=NO24G01530.1|Name=NO24G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp|location=Sequence derived from alignment at chr24:407376..408427+ (Nannochloropsis oceanica)
ATGCCGCCACGCAGTTTCTTTATAGGGTCGTCTTCTTGGGGTTGGTACCG
GGAAGGGATGAGACATGGGCGATCACTACCCAGGTAAGTTTGGGATAGGT
GGAAGGCTTTCTGTTGAAGAAGAGCGGCATTCGCATGGTCCTTGGCCTCA
TCAAGCTGCCAGGGCCGTACACGTCCAAATTGCTCAGGCCATCACGGCCT
ATATACGACACCTCCCTCGACAGAGCCTCGTCCTTGTCGCCCTTCTTCGC
ATCGCCTTGTGCGTCTTTGTGCTCCTGCAGCACCAATTCCTCCTCCTCGT
CCTCCTCCTTCAGCACCACTTCCTCCTCCTATTCTTCTGGTCTACACCGT
CTCCTCCTCGGCTTAGTCGGAGAGATGAATGCCGGCAAGTCCACAGTTCT
CAATGCCTTGACGCAACAAGCTACAAGTATCGTTGATGCCACGCCTGGGA
CAACATCAGATATCAAGACAGCCATCATGGAAATACATGGTTTGGGGCCG
ATCAAACTACTAGATACAGCAGGTGTGGATGACACGGGACGACTGGGAGA
TAAGAAGAGGAATAAGACATGGGAGGCAATGCGGGAAGTGGACGCGGCAC
TCGTGGTGATAGAGCCCTTTAACAAAGCAAAGGTGGCGACTCAAGGGATG
GATGAAGAGGAAGGACGTGCAGGAAGAAGAAGGGTGGCAGAAACGGCTGT
GGAGGAGGAGAAGCCCGTATCACCGCCATCAGCAACAGCAGTAGCAGGAG
CAGTAGCAGTCGGATCAGCACGATCACTATATGTGGCAGGGACAGCAGGA
AAAGCAGCTGCAGGGAGAACGCCAGTGGTGCCGGTTGCTTGTACAGCCTC
CTCTGCCTCCCTCCCTCTTCTCATTTCCCTTGTTCGAAGCATGGCCAAGC
GACGCCGTCCCTCCATGCTCATCTTCAATATTAAGAATGACGAACGAGAG
AAATTTATGCGGCGAATTGGCGATGGGAGGGAAGGGGGGGGGAGTGGAGG
TTGGTGGAGGAGTTGTGTGCGTCAATTGAGGGGGAAATTCGGAAGGCAGT
GA
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Coding sequence (CDS) from alignment at chr24:407376..408427+

>NO24G01530.1 ID=NO24G01530.1|Name=NO24G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at chr24:407376..408427+ (Nannochloropsis oceanica)
ATGCCGCCACGCAGTTTCTTTATAGGGTCGTCTTCTTGGGGTTGGTACCG
GGAAGGGATGAGACATGGGCGATCACTACCCAGAGCCTCGTCCTTGTCGC
CCTTCTTCGCATCGCCTTGTGCGTCTTTGTGCTCCTGCAGCACCAATTCC
TCCTCCTCGTCCTCCTCCTTCAGCACCACTTCCTCCTCCTATTCTTCTGG
TCTACACCGTCTCCTCCTCGGCTTAGTCGGAGAGATGAATGCCGGCAAGT
CCACAGTTCTCAATGCCTTGACGCAACAAGCTACAAGTATCGTTGATGCC
ACGCCTGGGACAACATCAGATATCAAGACAGCCATCATGGAAATACATGG
TTTGGGGCCGATCAAACTACTAGATACAGCAGGTGTGGATGACACGGGAC
GACTGGGAGATAAGAAGAGGAATAAGACATGGGAGGCAATGCGGGAAGTG
GACGCGGCACTCGTGGTGATAGAGCCCTTTAACAAAGCAAAGGTGGCGAC
TCAAGGGATGGATGAAGAGGAAGGACGTGCAGGAAGAAGAAGGGTGGCAG
AAACGGCTGTGGAGGAGGAGAAGCCCGTATCACCGCCATCAGCAACAGCA
GTAGCAGGAGCAGTAGCAGTCGGATCAGCACGATCACTATATGTGGCAGG
GACAGCAGGAAAAGCAGCTGCAGGGAGAACGCCAGTGGTGCCGGTTGCTT
GTACAGCCTCCTCTGCCTCCCTCCCTCTTCTCATTTCCCTTGTTCGAAGC
ATGGCCAAGCGACGCCGTCCCTCCATGCTCATCTTCAATATTAAGAATGA
CGAACGAGAGAAATTTATGCGGCGAATTGGCGATGGGAGGGAAGGGGGGG
GGAGTGGAGGTTGGTGGAGGAGTTGTGTGCGTCAATTGAGGGGGAAATTC
GGAAGGCAGTGA
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Synonyms
Publications