NO24G01450, NO24G01450 (gene) Nannochloropsis oceanica

Overview
NameNO24G01450
Unique NameNO24G01450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2592
Alignment locationchr24:387355..389946 +

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Properties
Property NameValue
DescriptionTubulin-specific chaperone a
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:387355..389946 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007023post-chaperonin tubulin folding pathway
GO:0007021tubulin complex assembly
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0048487beta-tubulin binding
Vocabulary: INTERPRO
TermDefinition
IPR036126TBCA_sf
IPR004226CofA_tubulin-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
Homology
BLAST of NO24G01450 vs. NCBI_GenBank
Match: XP_005854539.1 (tubulin-specific chaperone a [Nannochloropsis gaditana CCMP526] >EKU21821.1 tubulin-specific chaperone a [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 149.1 bits (375), Expect = 9.700e-33
Identity = 82/120 (68.33%), Postives = 94/120 (78.33%), Query Frame = 0
Query:    1 MGRLSDNGPATIDDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADMRERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVTEHQEVKGLQESDILAEATALVNQATTA 121
            MG L+D   A  D+L RQLKIKVGVA+RL KE ASYE EA AQEQKIA MR  G+D YDIKKQEEVLQESYMMIPDSK+RLQAA+E L AF+T+ ++VK +QESD+ AEA  L  Q  TA
Sbjct:    1 MGPLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDTYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTA 120          
BLAST of NO24G01450 vs. NCBI_GenBank
Match: EWM24337.1 (tubulin-specific chaperone a [Nannochloropsis gaditana])

HSP 1 Score: 149.1 bits (375), Expect = 9.700e-33
Identity = 82/120 (68.33%), Postives = 94/120 (78.33%), Query Frame = 0
Query:    1 MGRLSDNGPATIDDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADMRERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVTEHQEVKGLQESDILAEATALVNQATTA 121
            MG L+D   A  D+L RQLKIKVGVA+RL KE ASYE EA AQEQKIA MR  G+D YDIKKQEEVLQESYMMIPDSK+RLQAA+E L AF+T+ ++VK +QESD+ AEA  L  Q  TA
Sbjct:    1 MGSLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTA 120          
BLAST of NO24G01450 vs. NCBI_GenBank
Match: CBN74602.1 (putative: Beta-tubulin folding cofactor A [Ectocarpus siliculosus])

HSP 1 Score: 111.7 bits (278), Expect = 1.700e-21
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = 0
Query:   14 DLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADMRERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVTEHQEVKGLQESDILAEATALVNQATTAA 122
            D ARQLKIK+GV KR+ KEVASYE EA   E K+  MR+ G+D YDI+KQEEVLQESYMMIPDSK+RL  A+ED+E F+ EH   +GL  +D L EA  L+ +A   A
Sbjct:    3 DTARQLKIKLGVCKRMVKEVASYEVEAKENEAKVQKMRDDGKDAYDIRKQEEVLQESYMMIPDSKSRLAKALEDMEGFLGEHAGAEGL-PTDQLEEAKGLLVEAGITA 109          
BLAST of NO24G01450 vs. NCBI_GenBank
Match: XP_020631879.1 (tubulin-specific chaperone A-like [Orbicella faveolata])

HSP 1 Score: 86.3 bits (212), Expect = 7.700e-14
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = 0
Query:   10 ATIDDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADMRERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVT---------EHQEVKGLQESDILAE 110
            A+  D  RQLKIK GV KRL KE   YE EAV Q  K+  M+   +D YDIKKQ+EVL+ES +MIPD K RL+ A +DL+  V          EH+  K + E+ +L E
Sbjct:    2 ASASDPKRQLKIKTGVVKRLAKEKEMYEKEAVDQAAKVEKMKAEEKDEYDIKKQKEVLEESRIMIPDCKRRLKTAYDDLKKLVADTEELCETEEHKNAKAILENTVLEE 110          
BLAST of NO24G01450 vs. NCBI_GenBank
Match: XP_014600664.1 (PREDICTED: tubulin-specific chaperone A [Polistes canadensis])

HSP 1 Score: 85.9 bits (211), Expect = 1.000e-13
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 0
Query:   13 DDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADMRERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVTEHQEVKGLQE----SDILAEATA 113
            D   R LKIK GV KRL KE  +YE EA  Q Q+I  ++E+ +D YDIKKQEEVLQES MM+PD + RL  A E+L++ +   Q++K +++      +L EA A
Sbjct:    3 DPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRQRIQQLKEQDKDGYDIKKQEEVLQESLMMVPDCQRRLVKAFEELKSILDTEQDLKEVEDYIEAEKVLQEAEA 106          
BLAST of NO24G01450 vs. NCBI_GenBank
Match: XP_015190252.1 (PREDICTED: tubulin-specific chaperone A [Polistes dominula])

HSP 1 Score: 85.9 bits (211), Expect = 1.000e-13
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 0
Query:   13 DDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADMRERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVTEHQEVKGLQE----SDILAEATA 113
            D   R LKIK GV KRL KE  +YE EA  Q Q+I  ++E+ +D YDIKKQEEVLQES MM+PD + RL  A E+L++ +   Q++K +++      +L EA A
Sbjct:    3 DPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRQRIQQLKEQDKDGYDIKKQEEVLQESLMMVPDCQRRLVKAFEELKSILDTEQDLKEVEDYIEAEKVLQEAEA 106          
BLAST of NO24G01450 vs. NCBI_GenBank
Match: XP_021346015.1 (tubulin-specific chaperone A-like [Mizuhopecten yessoensis] >OWF54046.1 Tubulin-specific chaperone A [Mizuhopecten yessoensis])

HSP 1 Score: 85.9 bits (211), Expect = 1.000e-13
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 0
Query:   13 DDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADMRERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVTEHQEVKGLQESDILAEATALVNQATTA 121
            D   +QLKIK GV KRLTKE  SYE E V QE+ I  M+  G+D YDIKKQ EVL ES  MIPD+K RL   +EDL+ ++ +  E+K   E++    A  +  +A TA
Sbjct:    3 DPNMKQLKIKTGVVKRLTKEKYSYEKEVVKQEEHIEKMKADGKDPYDIKKQGEVLDESKDMIPDTKRRLTKGLEDLQKYMEQADELK---ETEEFQTAVTMCKEAVTA 107          
BLAST of NO24G01450 vs. NCBI_GenBank
Match: XP_008552838.1 (PREDICTED: tubulin-specific chaperone A [Microplitis demolitor])

HSP 1 Score: 85.5 bits (210), Expect = 1.300e-13
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 0
Query:   13 DDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADMRERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVTEHQEVKGLQESDILAEATALVNQA 118
            D   R LKIK GV KRL KE  +YE E + Q++++   ++ G+D +DIKKQEEVLQES MM+PD + RL  A E+L++ +   Q++K   E++I  EA  +V +A
Sbjct:    3 DPRLRTLKIKTGVVKRLAKEKQTYEKELIQQQERVEKFKQEGKDQHDIKKQEEVLQESLMMVPDCQRRLMKAHEELKSILESEQDLK---ETEIYIEAEKVVAEA 104          
BLAST of NO24G01450 vs. NCBI_GenBank
Match: XP_015524527.1 (PREDICTED: tubulin-specific chaperone A [Neodiprion lecontei])

HSP 1 Score: 85.1 bits (209), Expect = 1.700e-13
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 0
Query:   13 DDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADMRERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVTEHQEVKGLQESDILAEATALVNQA 118
            D   R LKIK GV KRL KE  +YE EA  Q  +I   +++G+D YDI+KQEEVLQES MM+PD + RL  A E+L+  +   Q++K   E++  AEA  ++ +A
Sbjct:    3 DPRIRTLKIKTGVVKRLAKEKVTYEREAAQQRDRIQKFKDQGKDEYDIRKQEEVLQESLMMVPDCQRRLVKAFEELKKILESEQDLK---EAEAYAEAEKVILEA 104          
BLAST of NO24G01450 vs. NCBI_GenBank
Match: OEU16399.1 (tubulin binding cofactor A [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 85.1 bits (209), Expect = 1.700e-13
Identity = 49/106 (46.23%), Postives = 73/106 (68.87%), Query Frame = 0
Query:   11 TIDDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADMRERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVTEHQEVKGLQESDILAEATALVNQ 117
            ++ D  RQL IK    +RL+KEV+ Y++E    E+KI +M+++ ++ YDIKK +EVL ESYMMIPDSK RL+ A+ DL  +V E  EVKGL+ ++   +A  L+ +
Sbjct:    5 SLPDPQRQLMIKTKACQRLSKEVSYYQDEVDENEEKIKEMKDQNRNPYDIKKFQEVLGESYMMIPDSKNRLEQALSDLTTYV-ESAEVKGLETNEWYVQAQELLKK 109          
The following BLAST results are available for this feature:
BLAST of NO24G01450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854539.19.700e-3368.33tubulin-specific chaperone a [Nannochloropsis gadi... [more]
EWM24337.19.700e-3368.33tubulin-specific chaperone a [Nannochloropsis gadi... [more]
CBN74602.11.700e-2160.19putative: Beta-tubulin folding cofactor A [Ectocar... [more]
XP_020631879.17.700e-1447.71tubulin-specific chaperone A-like [Orbicella faveo... [more]
XP_014600664.11.000e-1348.08PREDICTED: tubulin-specific chaperone A [Polistes ... [more]
XP_015190252.11.000e-1348.08PREDICTED: tubulin-specific chaperone A [Polistes ... [more]
XP_021346015.11.000e-1349.07tubulin-specific chaperone A-like [Mizuhopecten ye... [more]
XP_008552838.11.300e-1345.71PREDICTED: tubulin-specific chaperone A [Microplit... [more]
XP_015524527.11.700e-1346.67PREDICTED: tubulin-specific chaperone A [Neodiprio... [more]
OEU16399.11.700e-1346.23tubulin binding cofactor A [Fragilariopsis cylindr... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002849NSK002849Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01450.1NO24G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G01450.2NO24G01450.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598482gene_7369Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100105g19gene6126Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01450.1NO24G01450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G01450.2NO24G01450.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01450 ID=NO24G01450|Name=NO24G01450|organism=Nannochloropsis oceanica|type=gene|length=2592bp
ACTACAGGCTTCCATCGCACCATCGCACCACTGCACCAACGTTTTCCTTC
GTACTAAGAGCATAATGGGACGTTTGTCAGACAATGGACCCGCGACGATC
GATGATCTTGCCCGCCAGCTCAAAATAAAGGTCGGGGTAGCCAAACGgtg
ggtcgactcggcaaaaagtgaaagcgtgtgggagagggatgaacagtgat
aatgttgagcggcatcttgtttgtacaaggctttccaactgcctatgttc
gttgtaaccttttgaggcagagagtgaatgccatagcaggagaagtctca
ccctccctccctccccctcccctagTCTTACCAAAGAGGTTGCCTCCTAC
GAAAATGAAGCCGTAGCTCAAGAACAAAAGATTGCGGATATGCGTGAACG
AGGTCAAGATATCTATGACATTAAGAAGCAAGAAGAAGTTCTACAGGAGT
CATACATGATGATTCCTGATAGCAAGGCTAGACTGCAGGCAGCAGTGGAG
GACTTGGAGGCCTTCGTGgtaagggaggaaaggagggaggaagggagtga
tgtagaaacgatcacatactgtcgccatttgtagaaaaacatcaagatgc
tgatattcatttctctttcctcgtcaacaaaatttgtctccccccgtcta
tcttctgttgcatatctgcaggcggagaagcgacatggaagggagtggaa
acgtccgtgggcatttcaattgaaacatttaattgacatgctccagcctg
ttcacgtctttctatccatatttcctgtttcctttctctttcttgcagAC
GGAGCACCAGGAGGTGAAGGGGTTGCAGGAGTCAGACATCTTGGCGGAGG
CCACCGCGCTCGTCAACCAGGCCACGACAGCTGCCACTGCCACCACCACT
GGCATTTAAACAATAAGAAGAGGTAAGAGAAGCTGCCTAGAATACCAGCA
ATCGAGTAAAGGGAGAACCCACGAGAGGAAGACAGGGACCAACGGCGGCA
ACCACCACCGGCAGCTAACAGAAAGAGATGGCAGGAGAAGGCAACGGAGG
GAAAAGATGACAACATGATGAAGAAACCATAAGGGTGTCTTTACACAGAG
GCAAGGCGACGAAAAGCATCACCATAACAATAAGATCAATGGTAGAAAGG
GGGGGGTAATACAAGCAAATCAACGGGACAGGAGAGGGAAGACAGAAAAC
AAGGGAATCACCCAAAACGAATGGCGGAGCTGTGACAACCGGAGAGCATT
TCTCACCACCTTCTCTATCTTCTTTTTTTCCTCCTTCTCTTTTTGGGAGT
GTCACAATTTATGATTGCCGCTTGCTTTTGTTTTTTTCGCCCATTTATCT
GACTGCCTTACATACATTTAAACTACACCGTCACTCCCTCCCGTCCTCCC
TCCCTCCCTCATTATCTCATTATTGTCATGCATGATTCGCCTTCCCTTTC
CTCTGAAGGTCATCCCATACATACTCACTCTTCCTCCCTCCCTTCTTCTC
ACTCCTATTCTCTTTCCCCCCGTCCACCCTCTTCCTCCTCCCCTATCCCA
GGAGGCACCACCAATGGCTGGGTGCTATCAAGGTAACGGTAGACTAACGC
CCCGTGCGCCTTCTCTTCCTTCTTGAATTTATTCTTCAGTTGGGCCCTAT
CCCGTTTCCCATCAAACAACAAGGAAGCCATGGTGGTGAAGTCCGTCCCG
CACTGCCGGAGCGCTTGATAAAATGACCGGGTTTCGGCCTCTGTCCATCG
CGTCGCTTTCGTCCGGGTCGTGAAGGAGTTGTAGGTAGCCGCCTGCTGGG
GATCTTCGATCACTTCCTCCATCCATCCCTCCTCCCCTGCCTCCTCGGGC
CTCGACACGACTTCAAGGGATTTCTGATTAATGACGATCTGGCCGTTCAC
AATCTCTACCTGAGGTCCCACCACCACTGGTGCTGTCGCGGTGGCGGTGA
CAGCGGCGGTTACGACAGTGGCAGCGCCCTCCTCGATGGGAAGAGAAGGA
GGGAGGGGGTTGTTGTTCTCCTCCCTATCTTTTTCTTCTTCCGTCTCTTG
CGTTTCTTCATCTTCTTGTCCCCTCCACGGTCTGATATCCTCGCAGCTGT
AGTGCTACCTCTTCTCCTCCCTCTTCCTCTTACCACTACTGCTGCTGCGG
CGGCGGCGGCGGCGGCGGCAGCATCGTCCTCTTCCTCCTTCCCCTCCTCC
TTTTCTTCTTCTCCTTCTTTTCCCTCTTTCTCCTCTCCCGCCTTCTTTTC
CTTTTCCTTCTCTTTCTTTTTCAGTCTGGCTGCCTCTTCCTTTTCCTCGT
CCTCCTTTCTCTTCTTTTTCGCAGCCGCCGCCGCTGCAGATGCTGCTGAT
GCGCCCAAGCTCAATTTTCGCATTCCAGGGCACGGTTTTTCTCGCCGTCT
GTATTCTTGGAGAAGGCTCCGTAAAGATTTATATACCTCTGACTGCTGCT
CCTCGTCCTCTTCCTTCCCTTCCTCCTCATCCTCTACTGAAGATGATGCT
GATTCCCAGGATTCAGAGGAAGACGAAGAGGAGGAAGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGGAGGAGGAGGAGGAGGAAGGAG
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protein sequence of NO24G01450.1

>NO24G01450.1-protein ID=NO24G01450.1-protein|Name=NO24G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MGRLSDNGPATIDDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADM
RERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVTEHQEVKG
LQESDILAEATALVNQATTAATATTTGI*
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protein sequence of NO24G01450.2

>NO24G01450.2-protein ID=NO24G01450.2-protein|Name=NO24G01450.2|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MGRLSDNGPATIDDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADM
RERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVVREERREE
GSDVETITYCRHL*
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Synonyms
Publications