NO24G01450.1, NO24G01450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01450.1
Unique NameNO24G01450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2134
Alignment locationchr24:387355..389946 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:387355..389946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01450.1 vs.
Match: XP_005854539.1 (tubulin-specific chaperone a [Nannochloropsis gaditana CCMP526]; EKU21821.1 tubulin-specific chaperone a [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 149.1 bits (375), Expect = 9.700e-33
Identity = 82/120 (68.33%), Postives = 94/120 (78.33%), Query Frame = 0 
Query:    1 MGRLSDNGPATIDDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADMRERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVTEHQEVKGLQESDILAEATALVNQATTA 121
            MG L+D   A  D+L RQLKIKVGVA+RL KE ASYE EA AQEQKIA MR  G+D YDIKKQEEVLQESYMMIPDSK+RLQAA+E L AF+T+ ++VK +QESD+ AEA  L  Q  TA
Sbjct:    1 MGPLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDTYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTA 120
The following BLAST results are available for this feature:
BLAST of NO24G01450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400160018002000SequenceXP_005854539.1
Match NameE-valueIdentityDescription
XP_005854539.19.700e-3368.33tubulin-specific chaperone a [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01450NO24G01450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01450.1NO24G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01450.1.cds1NO24G01450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01450.1.cds2NO24G01450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01450.1.cds3NO24G01450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01450.1 ID=NO24G01450.1|Name=NO24G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2134bp
ACTACAGGCTTCCATCGCACCATCGCACCACTGCACCAACGTTTTCCTTC
GTACTAAGAGCATAATGGGACGTTTGTCAGACAATGGACCCGCGACGATC
GATGATCTTGCCCGCCAGCTCAAAATAAAGGTCGGGGTAGCCAAACGTCT
TACCAAAGAGGTTGCCTCCTACGAAAATGAAGCCGTAGCTCAAGAACAAA
AGATTGCGGATATGCGTGAACGAGGTCAAGATATCTATGACATTAAGAAG
CAAGAAGAAGTTCTACAGGAGTCATACATGATGATTCCTGATAGCAAGGC
TAGACTGCAGGCAGCAGTGGAGGACTTGGAGGCCTTCGTGACGGAGCACC
AGGAGGTGAAGGGGTTGCAGGAGTCAGACATCTTGGCGGAGGCCACCGCG
CTCGTCAACCAGGCCACGACAGCTGCCACTGCCACCACCACTGGCATTTA
AACAATAAGAAGAGGTAAGAGAAGCTGCCTAGAATACCAGCAATCGAGTA
AAGGGAGAACCCACGAGAGGAAGACAGGGACCAACGGCGGCAACCACCAC
CGGCAGCTAACAGAAAGAGATGGCAGGAGAAGGCAACGGAGGGAAAAGAT
GACAACATGATGAAGAAACCATAAGGGTGTCTTTACACAGAGGCAAGGCG
ACGAAAAGCATCACCATAACAATAAGATCAATGGTAGAAAGGGGGGGGTA
ATACAAGCAAATCAACGGGACAGGAGAGGGAAGACAGAAAACAAGGGAAT
CACCCAAAACGAATGGCGGAGCTGTGACAACCGGAGAGCATTTCTCACCA
CCTTCTCTATCTTCTTTTTTTCCTCCTTCTCTTTTTGGGAGTGTCACAAT
TTATGATTGCCGCTTGCTTTTGTTTTTTTCGCCCATTTATCTGACTGCCT
TACATACATTTAAACTACACCGTCACTCCCTCCCGTCCTCCCTCCCTCCC
TCATTATCTCATTATTGTCATGCATGATTCGCCTTCCCTTTCCTCTGAAG
GTCATCCCATACATACTCACTCTTCCTCCCTCCCTTCTTCTCACTCCTAT
TCTCTTTCCCCCCGTCCACCCTCTTCCTCCTCCCCTATCCCAGGAGGCAC
CACCAATGGCTGGGTGCTATCAAGGTAACGGTAGACTAACGCCCCGTGCG
CCTTCTCTTCCTTCTTGAATTTATTCTTCAGTTGGGCCCTATCCCGTTTC
CCATCAAACAACAAGGAAGCCATGGTGGTGAAGTCCGTCCCGCACTGCCG
GAGCGCTTGATAAAATGACCGGGTTTCGGCCTCTGTCCATCGCGTCGCTT
TCGTCCGGGTCGTGAAGGAGTTGTAGGTAGCCGCCTGCTGGGGATCTTCG
ATCACTTCCTCCATCCATCCCTCCTCCCCTGCCTCCTCGGGCCTCGACAC
GACTTCAAGGGATTTCTGATTAATGACGATCTGGCCGTTCACAATCTCTA
CCTGAGGTCCCACCACCACTGGTGCTGTCGCGGTGGCGGTGACAGCGGCG
GTTACGACAGTGGCAGCGCCCTCCTCGATGGGAAGAGAAGGAGGGAGGGG
GTTGTTGTTCTCCTCCCTATCTTTTTCTTCTTCCGTCTCTTGCGTTTCTT
CATCTTCTTGTCCCCTCCACGGTCTGATATCCTCGCAGCTGTAGTGCTAC
CTCTTCTCCTCCCTCTTCCTCTTACCACTACTGCTGCTGCGGCGGCGGCG
GCGGCGGCGGCAGCATCGTCCTCTTCCTCCTTCCCCTCCTCCTTTTCTTC
TTCTCCTTCTTTTCCCTCTTTCTCCTCTCCCGCCTTCTTTTCCTTTTCCT
TCTCTTTCTTTTTCAGTCTGGCTGCCTCTTCCTTTTCCTCGTCCTCCTTT
CTCTTCTTTTTCGCAGCCGCCGCCGCTGCAGATGCTGCTGATGCGCCCAA
GCTCAATTTTCGCATTCCAGGGCACGGTTTTTCTCGCCGTCTGTATTCTT
GGAGAAGGCTCCGTAAAGATTTATATACCTCTGACTGCTGCTCCTCGTCC
TCTTCCTTCCCTTCCTCCTCATCCTCTACTGAAGATGATGCTGATTCCCA
GGATTCAGAGGAAGACGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGGAGGAGGAGGAGGAGGAAGGAG
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protein sequence of NO24G01450.1

>NO24G01450.1-protein ID=NO24G01450.1-protein|Name=NO24G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MGRLSDNGPATIDDLARQLKIKVGVAKRLTKEVASYENEAVAQEQKIADM
RERGQDIYDIKKQEEVLQESYMMIPDSKARLQAAVEDLEAFVTEHQEVKG
LQESDILAEATALVNQATTAATATTTGI*
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mRNA from alignment at chr24:387355..389946+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01450.1 ID=NO24G01450.1|Name=NO24G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2592bp|location=Sequence derived from alignment at chr24:387355..389946+ (Nannochloropsis oceanica)
ACTACAGGCTTCCATCGCACCATCGCACCACTGCACCAACGTTTTCCTTC
GTACTAAGAGCATAATGGGACGTTTGTCAGACAATGGACCCGCGACGATC
GATGATCTTGCCCGCCAGCTCAAAATAAAGGTCGGGGTAGCCAAACGGTG
GGTCGACTCGGCAAAAAGTGAAAGCGTGTGGGAGAGGGATGAACAGTGAT
AATGTTGAGCGGCATCTTGTTTGTACAAGGCTTTCCAACTGCCTATGTTC
GTTGTAACCTTTTGAGGCAGAGAGTGAATGCCATAGCAGGAGAAGTCTCA
CCCTCCCTCCCTCCCCCTCCCCTAGTCTTACCAAAGAGGTTGCCTCCTAC
GAAAATGAAGCCGTAGCTCAAGAACAAAAGATTGCGGATATGCGTGAACG
AGGTCAAGATATCTATGACATTAAGAAGCAAGAAGAAGTTCTACAGGAGT
CATACATGATGATTCCTGATAGCAAGGCTAGACTGCAGGCAGCAGTGGAG
GACTTGGAGGCCTTCGTGGTAAGGGAGGAAAGGAGGGAGGAAGGGAGTGA
TGTAGAAACGATCACATACTGTCGCCATTTGTAGAAAAACATCAAGATGC
TGATATTCATTTCTCTTTCCTCGTCAACAAAATTTGTCTCCCCCCGTCTA
TCTTCTGTTGCATATCTGCAGGCGGAGAAGCGACATGGAAGGGAGTGGAA
ACGTCCGTGGGCATTTCAATTGAAACATTTAATTGACATGCTCCAGCCTG
TTCACGTCTTTCTATCCATATTTCCTGTTTCCTTTCTCTTTCTTGCAGAC
GGAGCACCAGGAGGTGAAGGGGTTGCAGGAGTCAGACATCTTGGCGGAGG
CCACCGCGCTCGTCAACCAGGCCACGACAGCTGCCACTGCCACCACCACT
GGCATTTAAACAATAAGAAGAGGTAAGAGAAGCTGCCTAGAATACCAGCA
ATCGAGTAAAGGGAGAACCCACGAGAGGAAGACAGGGACCAACGGCGGCA
ACCACCACCGGCAGCTAACAGAAAGAGATGGCAGGAGAAGGCAACGGAGG
GAAAAGATGACAACATGATGAAGAAACCATAAGGGTGTCTTTACACAGAG
GCAAGGCGACGAAAAGCATCACCATAACAATAAGATCAATGGTAGAAAGG
GGGGGGTAATACAAGCAAATCAACGGGACAGGAGAGGGAAGACAGAAAAC
AAGGGAATCACCCAAAACGAATGGCGGAGCTGTGACAACCGGAGAGCATT
TCTCACCACCTTCTCTATCTTCTTTTTTTCCTCCTTCTCTTTTTGGGAGT
GTCACAATTTATGATTGCCGCTTGCTTTTGTTTTTTTCGCCCATTTATCT
GACTGCCTTACATACATTTAAACTACACCGTCACTCCCTCCCGTCCTCCC
TCCCTCCCTCATTATCTCATTATTGTCATGCATGATTCGCCTTCCCTTTC
CTCTGAAGGTCATCCCATACATACTCACTCTTCCTCCCTCCCTTCTTCTC
ACTCCTATTCTCTTTCCCCCCGTCCACCCTCTTCCTCCTCCCCTATCCCA
GGAGGCACCACCAATGGCTGGGTGCTATCAAGGTAACGGTAGACTAACGC
CCCGTGCGCCTTCTCTTCCTTCTTGAATTTATTCTTCAGTTGGGCCCTAT
CCCGTTTCCCATCAAACAACAAGGAAGCCATGGTGGTGAAGTCCGTCCCG
CACTGCCGGAGCGCTTGATAAAATGACCGGGTTTCGGCCTCTGTCCATCG
CGTCGCTTTCGTCCGGGTCGTGAAGGAGTTGTAGGTAGCCGCCTGCTGGG
GATCTTCGATCACTTCCTCCATCCATCCCTCCTCCCCTGCCTCCTCGGGC
CTCGACACGACTTCAAGGGATTTCTGATTAATGACGATCTGGCCGTTCAC
AATCTCTACCTGAGGTCCCACCACCACTGGTGCTGTCGCGGTGGCGGTGA
CAGCGGCGGTTACGACAGTGGCAGCGCCCTCCTCGATGGGAAGAGAAGGA
GGGAGGGGGTTGTTGTTCTCCTCCCTATCTTTTTCTTCTTCCGTCTCTTG
CGTTTCTTCATCTTCTTGTCCCCTCCACGGTCTGATATCCTCGCAGCTGT
AGTGCTACCTCTTCTCCTCCCTCTTCCTCTTACCACTACTGCTGCTGCGG
CGGCGGCGGCGGCGGCGGCAGCATCGTCCTCTTCCTCCTTCCCCTCCTCC
TTTTCTTCTTCTCCTTCTTTTCCCTCTTTCTCCTCTCCCGCCTTCTTTTC
CTTTTCCTTCTCTTTCTTTTTCAGTCTGGCTGCCTCTTCCTTTTCCTCGT
CCTCCTTTCTCTTCTTTTTCGCAGCCGCCGCCGCTGCAGATGCTGCTGAT
GCGCCCAAGCTCAATTTTCGCATTCCAGGGCACGGTTTTTCTCGCCGTCT
GTATTCTTGGAGAAGGCTCCGTAAAGATTTATATACCTCTGACTGCTGCT
CCTCGTCCTCTTCCTTCCCTTCCTCCTCATCCTCTACTGAAGATGATGCT
GATTCCCAGGATTCAGAGGAAGACGAAGAGGAGGAAGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGGAGGAGGAGGAGGAGGAAGGAG
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Coding sequence (CDS) from alignment at chr24:387355..389946+

>NO24G01450.1 ID=NO24G01450.1|Name=NO24G01450.1|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at chr24:387355..389946+ (Nannochloropsis oceanica)
ATGGGACGTTTGTCAGACAATGGACCCGCGACGATCGATGATCTTGCCCG
CCAGCTCAAAATAAAGGTCGGGGTAGCCAAACGTCTTACCAAAGAGGTTG
CCTCCTACGAAAATGAAGCCGTAGCTCAAGAACAAAAGATTGCGGATATG
CGTGAACGAGGTCAAGATATCTATGACATTAAGAAGCAAGAAGAAGTTCT
ACAGGAGTCATACATGATGATTCCTGATAGCAAGGCTAGACTGCAGGCAG
CAGTGGAGGACTTGGAGGCCTTCGTGACGGAGCACCAGGAGGTGAAGGGG
TTGCAGGAGTCAGACATCTTGGCGGAGGCCACCGCGCTCGTCAACCAGGC
CACGACAGCTGCCACTGCCACCACCACTGGCATTTAA
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Synonyms
Publications