NO24G01360, NO24G01360 (gene) Nannochloropsis oceanica

Overview
NameNO24G01360
Unique NameNO24G01360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length926
Alignment locationchr24:368884..369809 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:368884..369809 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
GO:0008233peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
GO:0006511ubiquitin-dependent protein catabolic process
GO:0006508proteolysis
Homology
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BLAST of NO24G01360 vs. NCBI_GenBank
Match: CBN80109.1 (similar to ubiquitin specific protease 48 [Ectocarpus siliculosus])

HSP 1 Score: 63.9 bits (154), Expect = 6.800e-7
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 0 
Query:   88 YPRCISSDHPQGSGNCAKNPHCLYGLGEKKEGIWHTSGKNSLVQALGEDPAALMRGWKAHPSAAASKGMKKGGGNGGVG 167
            YPRC   DH +   NC+ NP CLYGLGE KEGIW  S K +L+ ALGED + +++   +  + AA+     GG + G G
Sbjct:    7 YPRCTREDHVR-KKNCSNNPRCLYGLGEGKEGIW--SRKPALIAALGEDMSGMVKELPSESTRAATAA--AGGSSAGPG 80
The following BLAST results are available for this feature:
BLAST of NO24G01360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CBN80109.16.800e-745.57similar to ubiquitin specific protease 48 [Ectocar... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002858NSK002858Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01360.1NO24G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598457gene_7360Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01360.1NO24G01360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01360 ID=NO24G01360|Name=NO24G01360|organism=Nannochloropsis oceanica|type=gene|length=926bp
ATGTTCCCCCTATTTGAGTTCTATATTCATGgtacgtgaatctaaagtcc
aagagagaggaaagtttatataaatatatataatattatcgaagaaatca
atgcgcgaggaatgtcgcctatatgaatgcgattgattttggtcggaaaa
tgagctcgtacagcaaagcacaaacgcgctcgccaatccgttggtatcgc
ccgtgaaaaggaagaaaagcacgagcacacatacacaacacacacacacc
cactcgcacgcctgccccacagccttgtcatccatttcttcatcctacac
ccactccgcgaaatctagGTTGGGAGAGGCAAGGCAGACGCGCGAAGCAA
GGCGCAAGGAAGAAGGGAAAAGACGACGCTGCAGCCAACACCACACACCG
ATACTACCACGGTATGAGTGCCCGCTCCCGCCGTCCCAGCACCTCGGCTA
GGGACCGCGGGGCAGGCCCACCCCAGACCGGCCTCGAAGAGCTGGTGCAT
GGGCAGTTTTCCCACCTTCACCCTTACCGCGCCGGAGATCTGATCACCTA
CCCGCGTTGCATTTCCTCGGACCACCCGCAAGGCAGTGGTAATTGTGCCA
AGAATCCACATTGTCTGTATGGGCTGGGGGAAAAAAAGGAGGGAATATGG
CACACAAGTGGAAAGAATTCGTTGGTGCAGGCCTTGGGGGAGGACCCGGC
CGCGCTGATGAGGGGATGGAAGGCTCATCCTTCCGCTGCAGCTAGCAAAG
GCATGAAAAAAGGAGGAGGAAATGGTGGAGTAGGAAGGAAGGGGGAAGTA
AGAAAAAAGCGGGGACTGTGGCTGTGCCGACAACGACATCCGACGTGGCG
AAAGGTGAAGGAGGAGGAGAAGGAGGGAAGAGGAAGAAGCGGGGACGGCC
TTCGGGTGCGGGAGCGGCCGGAGTGA
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protein sequence of NO24G01360.1

>NO24G01360.1-protein ID=NO24G01360.1-protein|Name=NO24G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MFPLFEFYIHGWERQGRRAKQGARKKGKDDAAANTTHRYYHGMSARSRRP
STSARDRGAGPPQTGLEELVHGQFSHLHPYRAGDLITYPRCISSDHPQGS
GNCAKNPHCLYGLGEKKEGIWHTSGKNSLVQALGEDPAALMRGWKAHPSA
AASKGMKKGGGNGGVGRKGEVRKKRGLWLCRQRHPTWRKVKEEEKEGRGR
SGDGLRVRERPE*
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Synonyms
Publications