NO24G01360.1, NO24G01360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01360.1
Unique NameNO24G01360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length639
Alignment locationchr24:368884..369809 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:368884..369809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01360.1 vs.
Match: CBN80109.1 (similar to ubiquitin specific protease 48 [Ectocarpus siliculosus])

HSP 1 Score: 63.9 bits (154), Expect = 6.800e-7
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 0 
Query:   88 YPRCISSDHPQGSGNCAKNPHCLYGLGEKKEGIWHTSGKNSLVQALGEDPAALMRGWKAHPSAAASKGMKKGGGNGGVG 167
            YPRC   DH +   NC+ NP CLYGLGE KEGIW  S K +L+ ALGED + +++   +  + AA+     GG + G G
Sbjct:    7 YPRCTREDHVRKK-NCSNNPRCLYGLGEGKEGIW--SRKPALIAALGEDMSGMVKELPSESTRAATAA--AGGSSAGPG 80
The following BLAST results are available for this feature:
BLAST of NO24G01360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN80109.16.800e-745.57similar to ubiquitin specific protease 48 [Ectocar... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01360NO24G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01360.1NO24G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01360.1.cds1NO24G01360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01360.1.cds2NO24G01360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01360.1 ID=NO24G01360.1|Name=NO24G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=639bp
ATGTTCCCCCTATTTGAGTTCTATATTCATGGTTGGGAGAGGCAAGGCAG
ACGCGCGAAGCAAGGCGCAAGGAAGAAGGGAAAAGACGACGCTGCAGCCA
ACACCACACACCGATACTACCACGGTATGAGTGCCCGCTCCCGCCGTCCC
AGCACCTCGGCTAGGGACCGCGGGGCAGGCCCACCCCAGACCGGCCTCGA
AGAGCTGGTGCATGGGCAGTTTTCCCACCTTCACCCTTACCGCGCCGGAG
ATCTGATCACCTACCCGCGTTGCATTTCCTCGGACCACCCGCAAGGCAGT
GGTAATTGTGCCAAGAATCCACATTGTCTGTATGGGCTGGGGGAAAAAAA
GGAGGGAATATGGCACACAAGTGGAAAGAATTCGTTGGTGCAGGCCTTGG
GGGAGGACCCGGCCGCGCTGATGAGGGGATGGAAGGCTCATCCTTCCGCT
GCAGCTAGCAAAGGCATGAAAAAAGGAGGAGGAAATGGTGGAGTAGGAAG
GAAGGGGGAAGTAAGAAAAAAGCGGGGACTGTGGCTGTGCCGACAACGAC
ATCCGACGTGGCGAAAGGTGAAGGAGGAGGAGAAGGAGGGAAGAGGAAGA
AGCGGGGACGGCCTTCGGGTGCGGGAGCGGCCGGAGTGA
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protein sequence of NO24G01360.1

>NO24G01360.1-protein ID=NO24G01360.1-protein|Name=NO24G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MFPLFEFYIHGWERQGRRAKQGARKKGKDDAAANTTHRYYHGMSARSRRP
STSARDRGAGPPQTGLEELVHGQFSHLHPYRAGDLITYPRCISSDHPQGS
GNCAKNPHCLYGLGEKKEGIWHTSGKNSLVQALGEDPAALMRGWKAHPSA
AASKGMKKGGGNGGVGRKGEVRKKRGLWLCRQRHPTWRKVKEEEKEGRGR
SGDGLRVRERPE*
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mRNA from alignment at chr24:368884..369809+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01360.1 ID=NO24G01360.1|Name=NO24G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=926bp|location=Sequence derived from alignment at chr24:368884..369809+ (Nannochloropsis oceanica)
ATGTTCCCCCTATTTGAGTTCTATATTCATGGTACGTGAATCTAAAGTCC
AAGAGAGAGGAAAGTTTATATAAATATATATAATATTATCGAAGAAATCA
ATGCGCGAGGAATGTCGCCTATATGAATGCGATTGATTTTGGTCGGAAAA
TGAGCTCGTACAGCAAAGCACAAACGCGCTCGCCAATCCGTTGGTATCGC
CCGTGAAAAGGAAGAAAAGCACGAGCACACATACACAACACACACACACC
CACTCGCACGCCTGCCCCACAGCCTTGTCATCCATTTCTTCATCCTACAC
CCACTCCGCGAAATCTAGGTTGGGAGAGGCAAGGCAGACGCGCGAAGCAA
GGCGCAAGGAAGAAGGGAAAAGACGACGCTGCAGCCAACACCACACACCG
ATACTACCACGGTATGAGTGCCCGCTCCCGCCGTCCCAGCACCTCGGCTA
GGGACCGCGGGGCAGGCCCACCCCAGACCGGCCTCGAAGAGCTGGTGCAT
GGGCAGTTTTCCCACCTTCACCCTTACCGCGCCGGAGATCTGATCACCTA
CCCGCGTTGCATTTCCTCGGACCACCCGCAAGGCAGTGGTAATTGTGCCA
AGAATCCACATTGTCTGTATGGGCTGGGGGAAAAAAAGGAGGGAATATGG
CACACAAGTGGAAAGAATTCGTTGGTGCAGGCCTTGGGGGAGGACCCGGC
CGCGCTGATGAGGGGATGGAAGGCTCATCCTTCCGCTGCAGCTAGCAAAG
GCATGAAAAAAGGAGGAGGAAATGGTGGAGTAGGAAGGAAGGGGGAAGTA
AGAAAAAAGCGGGGACTGTGGCTGTGCCGACAACGACATCCGACGTGGCG
AAAGGTGAAGGAGGAGGAGAAGGAGGGAAGAGGAAGAAGCGGGGACGGCC
TTCGGGTGCGGGAGCGGCCGGAGTGA
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Coding sequence (CDS) from alignment at chr24:368884..369809+

>NO24G01360.1 ID=NO24G01360.1|Name=NO24G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at chr24:368884..369809+ (Nannochloropsis oceanica)
ATGTTCCCCCTATTTGAGTTCTATATTCATGGTTGGGAGAGGCAAGGCAG
ACGCGCGAAGCAAGGCGCAAGGAAGAAGGGAAAAGACGACGCTGCAGCCA
ACACCACACACCGATACTACCACGGTATGAGTGCCCGCTCCCGCCGTCCC
AGCACCTCGGCTAGGGACCGCGGGGCAGGCCCACCCCAGACCGGCCTCGA
AGAGCTGGTGCATGGGCAGTTTTCCCACCTTCACCCTTACCGCGCCGGAG
ATCTGATCACCTACCCGCGTTGCATTTCCTCGGACCACCCGCAAGGCAGT
GGTAATTGTGCCAAGAATCCACATTGTCTGTATGGGCTGGGGGAAAAAAA
GGAGGGAATATGGCACACAAGTGGAAAGAATTCGTTGGTGCAGGCCTTGG
GGGAGGACCCGGCCGCGCTGATGAGGGGATGGAAGGCTCATCCTTCCGCT
GCAGCTAGCAAAGGCATGAAAAAAGGAGGAGGAAATGGTGGAGTAGGAAG
GAAGGGGGAAGTAAGAAAAAAGCGGGGACTGTGGCTGTGCCGACAACGAC
ATCCGACGTGGCGAAAGGTGAAGGAGGAGGAGAAGGAGGGAAGAGGAAGA
AGCGGGGACGGCCTTCGGGTGCGGGAGCGGCCGGAGTGA
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Synonyms
Publications