NO24G01310, NO24G01310 (gene) Nannochloropsis oceanica

Overview
NameNO24G01310
Unique NameNO24G01310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length944
Alignment locationchr24:358133..359076 +

Link to JBrowse

Properties
Property NameValue
DescriptionProtoporphyrin IX Mg-chelatase subunit H
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:358133..359076 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR003672CobN/Mg_chltase
Vocabulary: Molecular Function
TermDefinition
GO:0016874ligase activity
GO:0016851magnesium chelatase activity
Homology
BLAST of NO24G01310 vs. NCBI_GenBank
Match: WP_066345325.1 (magnesium chelatase subunit H [Geminocystis sp. NIES-3708] >BAQ61163.1 protoporphyrin IX Mg-chelatase subunit H [Geminocystis sp. NIES-3708])

HSP 1 Score: 190.3 bits (482), Expect = 7.300e-45
Identity = 103/212 (48.58%), Postives = 124/212 (58.49%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTG LK+AAE                                                    K+  + V  S +E+F+K+  P+ LE VLR+EYR+KLLNPKWAKAMA QGSGGAYEISQRMTAL+GW  T  F D +VYD   + YV D++MA  L E NPEAFRN+V RMLEANGRG+W+A  E LE +K LY   EDE+E
Sbjct: 1126 LTDIQEYYANTGGLKRAAE----------------------------------------------------KQSGKKVSASFVESFSKDTTPRKLEQVLRMEYRTKLLNPKWAKAMADQGSGGAYEISQRMTALIGWGGTVDFTDNWVYDQAVDTYVLDQDMANKLREANPEAFRNIVGRMLEANGRGFWDADEEKLEKIKSLYEMTEDELE 1285          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: WP_071103646.1 (DUF3479 domain-containing protein [Moorea producens] >AOY80228.1 protoporphyrin IX magnesium chelatase [Moorea producens JHB])

HSP 1 Score: 190.3 bits (482), Expect = 7.300e-45
Identity = 103/212 (48.58%), Postives = 126/212 (59.43%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTG LK+AAE                                                    K+  + V  S +E+F+K+  P+ LE +LRLEYR+KLLNPKWA+AMA QGSGGAYEISQRMTAL+GW  TA F+D +VYD   + Y  DEEMAK L + NPEAFRN+V RMLEANGRG+WE   E L+ L+ELY   ++EIE
Sbjct: 1222 LTDIQEYYANTGGLKRAAE----------------------------------------------------KQGGKTVNASFVESFSKDTTPRKLEDLLRLEYRTKLLNPKWAEAMANQGSGGAYEISQRMTALIGWGGTADFQDNWVYDQAADTYALDEEMAKRLRQANPEAFRNIVGRMLEANGRGFWEPDQETLQKLRELYDLTDEEIE 1381          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: XP_002501976.1 (magnesium-chelatase subunit chlh-like protein chloroplast precursor [Micromonas commoda] >ACO63234.1 magnesium-chelatase subunit chlh-like protein chloroplast precursor [Micromonas commoda])

HSP 1 Score: 189.9 bits (481), Expect = 9.600e-45
Identity = 106/212 (50.00%), Postives = 131/212 (61.79%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTGAL  AA N A   +  A                                           +P + V  SI+E F  +VAP+ LE  LR+EYR+KLLNP+WA+AM+ QGSGGAYEISQRMTALVGW +T+GF + +VYDG  ERYV+DEEM + L + NP+AFRNV+KRMLEA GRG W A  +VL+ L+ LYAE ED +E
Sbjct: 1381 LTDIQEYYANTGAL-VAAANAAKEDDANA------------------------------------------GKPIKKVACSIVETFGDDVAPRDLEETLRMEYRTKLLNPRWAEAMSQQGSGGAYEISQRMTALVGWGATSGFAEDWVYDGAHERYVEDEEMRERLRKANPQAFRNVLKRMLEAAGRGLWNADEKVLDELRALYAETEDALE 1549          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: WP_015149859.1 (magnesium chelatase subunit H [Oscillatoria acuminata] >AFY83232.1 cobaltochelatase CobN subunit [Oscillatoria acuminata PCC 6304])

HSP 1 Score: 189.9 bits (481), Expect = 9.600e-45
Identity = 105/212 (49.53%), Postives = 126/212 (59.43%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTG LK+AAE                                                T  GK+    V  S+IE+F+K+  P+ LE +LRLEYR+KLLNPKWA++MA QGSGGAYEISQRMTAL+GW  T  FKD +VYDG  E Y  D EMA  L + NPEAFRN+V RMLEA+GRG+W   P+ LE L+ LY+  EDEIE
Sbjct: 1076 LTDIQEYYANTGGLKRAAE------------------------------------------------TQSGKK----VTASLIESFSKDTTPRKLEDLLRLEYRTKLLNPKWAESMANQGSGGAYEISQRMTALIGWGGTVDFKDNWVYDGASETYAFDPEMANKLRKANPEAFRNIVGRMLEAHGRGFWNPDPDKLEKLQALYSVTEDEIE 1235          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: WP_017292701.1 (magnesium chelatase subunit H [Geminocystis herdmanii])

HSP 1 Score: 189.1 bits (479), Expect = 1.600e-44
Identity = 102/212 (48.11%), Postives = 126/212 (59.43%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTG LK+AAE                                                    K+  + V  S IE+F+++  P+ L+ VLR+EYR+KLLNPKWAKAMA QGSGGAYEISQRMTAL+GW   A F D +VYD   + YV D++MA  L E NPEAFRN+V RMLEANGRG+W+A  E L+ LK+LY + EDE+E
Sbjct: 1157 LTDIQEYYANTGGLKRAAE----------------------------------------------------KQSGKKVSASFIESFSQDTTPRKLDQVLRMEYRTKLLNPKWAKAMADQGSGGAYEISQRMTALIGWGGVADFTDNWVYDQAVDTYVLDQDMANKLREANPEAFRNIVGRMLEANGRGFWDADEEKLDKLKDLYEKTEDELE 1316          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: WP_017719122.1 (magnesium chelatase subunit H [Oscillatoria sp. PCC 10802])

HSP 1 Score: 189.1 bits (479), Expect = 1.600e-44
Identity = 105/212 (49.53%), Postives = 125/212 (58.96%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTG LK+AAE                                                 L G+R    V  S +E+F+K+  P+ LE +LRLEYR+KLLNPKWA AMA QGSGGAYEISQRMTAL+GW  TA F D +VYDG  + Y  D EMAK L E NPEAFRN+V RMLEANGRG+WE   E LE L++LY   ++E+E
Sbjct: 1074 LTDIQEYYANTGGLKRAAEK------------------------------------------------LRGER----VSASFVESFSKDTTPRKLEDLLRLEYRTKLLNPKWATAMANQGSGGAYEISQRMTALIGWGGTADFTDAWVYDGAADTYALDPEMAKKLREANPEAFRNIVGRMLEANGRGFWEPDAEKLEKLRQLYELTDEELE 1233          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: XP_001417934.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO96227.1 predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 189.1 bits (479), Expect = 1.600e-44
Identity = 105/212 (49.53%), Postives = 128/212 (60.38%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTGAL  AA+                                                  G K P   V  SI+E F K+V P+ L+  LR+EYR+KLLNP+WA AMA QGSGGAYEISQRMTALVGW +T+GF + +VYDG  E YV+DEEM   L ++NP+AFRNVVKRMLEA GRG W+A  E LE L+EL+++ EDE+E
Sbjct: 1096 LTDIQEYYANTGALVAAAK--------------------------------------------AAKEDAGVKNPD--VACSIVETFGKDVTPKDLDETLRMEYRTKLLNPRWATAMADQGSGGAYEISQRMTALVGWGATSGFAENWVYDGAHETYVEDEEMRDKLRKSNPQAFRNVVKRMLEAAGRGMWDADEETLENLRELFSDVEDEME 1261          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: WP_066116429.1 (magnesium chelatase subunit H [Geminocystis sp. NIES-3709] >BAQ64020.1 protoporphyrin IX Mg-chelatase subunit H [Geminocystis sp. NIES-3709])

HSP 1 Score: 188.3 bits (477), Expect = 2.800e-44
Identity = 100/212 (47.17%), Postives = 126/212 (59.43%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTG LK++AE                                                    K+  + V  S +E+F+++  P+ L+ VLR+EYR+KLLNPKWAKAMA QGSGGAYEISQRMTAL+GW   A F D +VYD   + YV D++MA  L E NPEAFRN+V RMLEANGRG+W+A  E L+ LK+LY + EDE+E
Sbjct: 1111 LTDIQEYYANTGGLKRSAE----------------------------------------------------KQSSKKVTASFVESFSQDTTPRKLDQVLRMEYRTKLLNPKWAKAMADQGSGGAYEISQRMTALIGWGGVADFTDNWVYDQAVDTYVLDQDMANKLREANPEAFRNIVGRMLEANGRGFWDADEEKLDKLKDLYEKTEDELE 1270          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: OZH54811.1 (protoporphyrin IX magnesium chelatase, partial [Hydrocoleum sp. CS-953])

HSP 1 Score: 188.0 bits (476), Expect = 3.600e-44
Identity = 105/218 (48.17%), Postives = 127/218 (58.26%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIELSGGKG 219
            +TDIQEYYANTG LK AAE                                                    KR K+ V  S +E+F+K+  P+ LE +LR+EYR+KLLNPKWA+AMA QGSGGAYEISQRMTAL+GW  TA F D +VYDG  E Y  D EMA+ L E NPEAFRN++ RMLEANGRG W+A  E L+ L++LY   ++EIE   G G
Sbjct:  372 LTDIQEYYANTGGLKLAAEK---------------------------------------------------KRGKK-VSASFVESFSKDTTPRKLEDLLRMEYRTKLLNPKWAEAMANQGSGGAYEISQRMTALIGWGGTANFADNWVYDGAAETYALDAEMAQKLREANPEAFRNIIGRMLEANGRGLWQADEEKLQKLRQLYDLTDEEIEGVSGLG 537          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: WP_062433219.1 (magnesium chelatase subunit H [Synechococcus sp. PCC 73109] >AMA08753.1 protoporphyrin IX magnesium chelatase [Synechococcus sp. PCC 73109])

HSP 1 Score: 187.6 bits (475), Expect = 4.800e-44
Identity = 102/212 (48.11%), Postives = 124/212 (58.49%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTG LKKAAEN +                                                     + V  S +E+F+K+  P+ LESVLR+EYRSKLLNPKWA+AMA QGSGGAYEISQRMTAL+GW  T  F+D++VYD   E Y  D  MA+ L E NPEAFRN+V RMLEA+GRG+WEA  E L+ L +LY   +D +E
Sbjct: 1075 LTDIQEYYANTGGLKKAAENASG----------------------------------------------------KTVTASFVESFSKDTTPRKLESVLRMEYRSKLLNPKWAEAMADQGSGGAYEISQRMTALIGWGGTVDFQDQWVYDQAAETYALDTTMAQKLREANPEAFRNIVGRMLEAHGRGFWEASDEKLQKLSDLYDLTDDVLE 1234          
The following BLAST results are available for this feature:
BLAST of NO24G01310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_066345325.17.300e-4548.58magnesium chelatase subunit H [Geminocystis sp. NI... [more]
WP_071103646.17.300e-4548.58DUF3479 domain-containing protein [Moorea producen... [more]
XP_002501976.19.600e-4550.00magnesium-chelatase subunit chlh-like protein chlo... [more]
WP_015149859.19.600e-4549.53magnesium chelatase subunit H [Oscillatoria acumin... [more]
WP_017292701.11.600e-4448.11magnesium chelatase subunit H [Geminocystis herdma... [more]
WP_017719122.11.600e-4449.53magnesium chelatase subunit H [Oscillatoria sp. PC... [more]
XP_001417934.11.600e-4449.53predicted protein [Ostreococcus lucimarinus CCE990... [more]
WP_066116429.12.800e-4447.17magnesium chelatase subunit H [Geminocystis sp. NI... [more]
OZH54811.13.600e-4448.17protoporphyrin IX magnesium chelatase, partial [Hy... [more]
WP_062433219.14.800e-4448.11magnesium chelatase subunit H [Synechococcus sp. P... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01310.1NO24G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01310.1NO24G01310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01310 ID=NO24G01310|Name=NO24G01310|organism=Nannochloropsis oceanica|type=gene|length=944bp
ATGACGGACATTCAAGAGTATTATGCGAACACGGgtgaggagctggacga
gggaggggaggagggagggagggaggcagagagggattgaaagaggggga
aaggccagttgtttgtccatcagttttctggaacaaggcatggctgcatc
ttcacttttgttttgcctcgctttgagtgtattccctgaatcatacatca
cttaattcaccctttttccctcccaatccagGCGCTCTCAAGAAAGCGGC
CGAAAACGTGGCCAACTCGCCGGAGCGTATCGCAGAGGAGGAAGCTGAAG
AGAAAGAAAACACACGCAGGGAGGATGCACAATCCTTCAGCAGCAGCACC
ACCACCACGCAGGCACAACCACATCCTCCTTTCCCCAGCACCACCTCCAC
CTTGGGAGGAAAACGGCCGAAAAGGGTCGTTCCCGTCAGTATAATTGAAG
CCTTTACCAAAGAAGTTGCCCCGCAGTCCCTCGAATCTGTCCTTCGCCTC
GAGTACCGCTCCAAGCTCCTCAATCCGAAATGGGCCAAGGCCATGGCCGC
CCAAGGCTCCGGTGGTGCCTACGAGATCTCCCAGAGAATGACGGCGCTGG
TCGGCTGGAGCAGCACGGCGGGTTTCAAGGATAAATTTGTATACGACGGT
GTGTGTGAGAGGTACGTCCAGGACGAAGAGATGGCGAAAACCTTGATGGA
AAACAACCCCGAGGCGTTCCGGAACGTGGTCAAGAGGATGTTGGAGGCGA
ATGGGAGGGGGTATTGGGAGGCGGGGCCTGAGGTATTGGAGCTATTGAAG
GAATTATATGCAGAGGCGGAGGATGAGATTGAGTTGAGTGGGGGGAAAGG
GGTCAGAAAGAAAGTGCTGAGGGAACAGGAAAGTGAGAAGGAAGGAGGGG
TAGTGAAACGTCTAGCGGCAGAGAAAACGCCAGTGTCGATGTGA
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protein sequence of NO24G01310.1

>NO24G01310.1-protein ID=NO24G01310.1-protein|Name=NO24G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MTDIQEYYANTGALKKAAENVANSPERIAEEEAEEKENTRREDAQSFSSS
TTTTQAQPHPPFPSTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLR
LEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYD
GVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELL
KELYAEAEDEIELSGGKGVRKKVLREQESEKEGGVVKRLAAEKTPVSM*
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Synonyms
Publications