NO24G01310.1, NO24G01310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01310.1
Unique NameNO24G01310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length747
Alignment locationchr24:358133..359076 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:358133..359076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01310.1 vs.
Match: XP_005855588.1 (protoporphyrin IX Mg-chelatase subunit H [Nannochloropsis gaditana CCMP526]; EKU20780.1 protoporphyrin IX Mg-chelatase subunit H [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 292.4 bits (747), Expect = 1.400e-75
Identity = 166/261 (63.60%), Postives = 190/261 (72.80%), Query Frame = 0 
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEEEAEEKENTRREDAQSFSSSTTTTQAQPHPPFPSTTSTL-GGK---RPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIELSGGKGVRKKVLREQESEKE-----------GGVVKRLAAEKTPV 247
            ++DIQEYYANTGALKKAAEN+AN+P+R                  S  ++    +AQP P      S   GGK   + KRVV VSI+EAFTK+VAPQ LE+ LRLEYRSKLLNPKWA+AMAAQGSGGAYEISQRMTALVGWSSTAGF+D++VYDG  ERYV DE+MA+ LM+NNPEA RNVVKRMLEANGRGYWE  PEVLE L+E+YA AEDEIELSGGKGVRKKVLRE   EK              ++K L  E+ PV
Sbjct:  904 LSDIQEYYANTGALKKAAENIANAPDR------------------SGKNTAAPPRAQPAPSQGRADSDQQGGKGEEKKKRVVKVSIVEAFTKDVAPQELEATLRLEYRSKLLNPKWAEAMAAQGSGGAYEISQRMTALVGWSSTAGFRDQWVYDGAVERYVLDEKMAQKLMDNNPEAMRNVVKRMLEANGRGYWETTPEVLEHLREMYAAAEDEIELSGGKGVRKKVLREDGGEKSAPTPREEVKVVSAMMKNLKEERAPV 1146
The following BLAST results are available for this feature:
BLAST of NO24G01310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855588.11.400e-7563.60protoporphyrin IX Mg-chelatase subunit H [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01310NO24G01310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01310.1NO24G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01310.1.cds1NO24G01310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01310.1.cds2NO24G01310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01310.1 ID=NO24G01310.1|Name=NO24G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=747bp
ATGACGGACATTCAAGAGTATTATGCGAACACGGGCGCTCTCAAGAAAGC
GGCCGAAAACGTGGCCAACTCGCCGGAGCGTATCGCAGAGGAGGAAGCTG
AAGAGAAAGAAAACACACGCAGGGAGGATGCACAATCCTTCAGCAGCAGC
ACCACCACCACGCAGGCACAACCACATCCTCCTTTCCCCAGCACCACCTC
CACCTTGGGAGGAAAACGGCCGAAAAGGGTCGTTCCCGTCAGTATAATTG
AAGCCTTTACCAAAGAAGTTGCCCCGCAGTCCCTCGAATCTGTCCTTCGC
CTCGAGTACCGCTCCAAGCTCCTCAATCCGAAATGGGCCAAGGCCATGGC
CGCCCAAGGCTCCGGTGGTGCCTACGAGATCTCCCAGAGAATGACGGCGC
TGGTCGGCTGGAGCAGCACGGCGGGTTTCAAGGATAAATTTGTATACGAC
GGTGTGTGTGAGAGGTACGTCCAGGACGAAGAGATGGCGAAAACCTTGAT
GGAAAACAACCCCGAGGCGTTCCGGAACGTGGTCAAGAGGATGTTGGAGG
CGAATGGGAGGGGGTATTGGGAGGCGGGGCCTGAGGTATTGGAGCTATTG
AAGGAATTATATGCAGAGGCGGAGGATGAGATTGAGTTGAGTGGGGGGAA
AGGGGTCAGAAAGAAAGTGCTGAGGGAACAGGAAAGTGAGAAGGAAGGAG
GGGTAGTGAAACGTCTAGCGGCAGAGAAAACGCCAGTGTCGATGTGA
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protein sequence of NO24G01310.1

>NO24G01310.1-protein ID=NO24G01310.1-protein|Name=NO24G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MTDIQEYYANTGALKKAAENVANSPERIAEEEAEEKENTRREDAQSFSSS
TTTTQAQPHPPFPSTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLR
LEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYD
GVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELL
KELYAEAEDEIELSGGKGVRKKVLREQESEKEGGVVKRLAAEKTPVSM*
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mRNA from alignment at chr24:358133..359076+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01310.1 ID=NO24G01310.1|Name=NO24G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=944bp|location=Sequence derived from alignment at chr24:358133..359076+ (Nannochloropsis oceanica)
ATGACGGACATTCAAGAGTATTATGCGAACACGGGTGAGGAGCTGGACGA
GGGAGGGGAGGAGGGAGGGAGGGAGGCAGAGAGGGATTGAAAGAGGGGGA
AAGGCCAGTTGTTTGTCCATCAGTTTTCTGGAACAAGGCATGGCTGCATC
TTCACTTTTGTTTTGCCTCGCTTTGAGTGTATTCCCTGAATCATACATCA
CTTAATTCACCCTTTTTCCCTCCCAATCCAGGCGCTCTCAAGAAAGCGGC
CGAAAACGTGGCCAACTCGCCGGAGCGTATCGCAGAGGAGGAAGCTGAAG
AGAAAGAAAACACACGCAGGGAGGATGCACAATCCTTCAGCAGCAGCACC
ACCACCACGCAGGCACAACCACATCCTCCTTTCCCCAGCACCACCTCCAC
CTTGGGAGGAAAACGGCCGAAAAGGGTCGTTCCCGTCAGTATAATTGAAG
CCTTTACCAAAGAAGTTGCCCCGCAGTCCCTCGAATCTGTCCTTCGCCTC
GAGTACCGCTCCAAGCTCCTCAATCCGAAATGGGCCAAGGCCATGGCCGC
CCAAGGCTCCGGTGGTGCCTACGAGATCTCCCAGAGAATGACGGCGCTGG
TCGGCTGGAGCAGCACGGCGGGTTTCAAGGATAAATTTGTATACGACGGT
GTGTGTGAGAGGTACGTCCAGGACGAAGAGATGGCGAAAACCTTGATGGA
AAACAACCCCGAGGCGTTCCGGAACGTGGTCAAGAGGATGTTGGAGGCGA
ATGGGAGGGGGTATTGGGAGGCGGGGCCTGAGGTATTGGAGCTATTGAAG
GAATTATATGCAGAGGCGGAGGATGAGATTGAGTTGAGTGGGGGGAAAGG
GGTCAGAAAGAAAGTGCTGAGGGAACAGGAAAGTGAGAAGGAAGGAGGGG
TAGTGAAACGTCTAGCGGCAGAGAAAACGCCAGTGTCGATGTGA
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Coding sequence (CDS) from alignment at chr24:358133..359076+

>NO24G01310.1 ID=NO24G01310.1|Name=NO24G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at chr24:358133..359076+ (Nannochloropsis oceanica)
ATGACGGACATTCAAGAGTATTATGCGAACACGGGCGCTCTCAAGAAAGC
GGCCGAAAACGTGGCCAACTCGCCGGAGCGTATCGCAGAGGAGGAAGCTG
AAGAGAAAGAAAACACACGCAGGGAGGATGCACAATCCTTCAGCAGCAGC
ACCACCACCACGCAGGCACAACCACATCCTCCTTTCCCCAGCACCACCTC
CACCTTGGGAGGAAAACGGCCGAAAAGGGTCGTTCCCGTCAGTATAATTG
AAGCCTTTACCAAAGAAGTTGCCCCGCAGTCCCTCGAATCTGTCCTTCGC
CTCGAGTACCGCTCCAAGCTCCTCAATCCGAAATGGGCCAAGGCCATGGC
CGCCCAAGGCTCCGGTGGTGCCTACGAGATCTCCCAGAGAATGACGGCGC
TGGTCGGCTGGAGCAGCACGGCGGGTTTCAAGGATAAATTTGTATACGAC
GGTGTGTGTGAGAGGTACGTCCAGGACGAAGAGATGGCGAAAACCTTGAT
GGAAAACAACCCCGAGGCGTTCCGGAACGTGGTCAAGAGGATGTTGGAGG
CGAATGGGAGGGGGTATTGGGAGGCGGGGCCTGAGGTATTGGAGCTATTG
AAGGAATTATATGCAGAGGCGGAGGATGAGATTGAGTTGAGTGGGGGGAA
AGGGGTCAGAAAGAAAGTGCTGAGGGAACAGGAAAGTGAGAAGGAAGGAG
GGGTAGTGAAACGTCTAGCGGCAGAGAAAACGCCAGTGTCGATGTGA
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Synonyms
Publications