NO24G01310, NO24G01310 (gene) Nannochloropsis oceanica

Overview
NameNO24G01310
Unique NameNO24G01310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length944
Alignment locationchr24:358133..359076 +

Link to JBrowse

Properties
Property NameValue
DescriptionProtoporphyrin IX Mg-chelatase subunit H
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:358133..359076 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR003672CobN/Mg_chltase
Vocabulary: Molecular Function
TermDefinition
GO:0016874ligase activity
GO:0016851magnesium chelatase activity
Homology
BLAST of NO24G01310 vs. NCBI_GenBank
Match: XP_005855588.1 (protoporphyrin IX Mg-chelatase subunit H [Nannochloropsis gaditana CCMP526] >EKU20780.1 protoporphyrin IX Mg-chelatase subunit H [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 289.3 bits (739), Expect = 1.200e-74
Identity = 158/257 (61.48%), Postives = 181/257 (70.43%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIELSGGKGVRKKVLREQESEKE-----------GGVVKRLAAEKTPV 247
            ++DIQEYYANTGALKKAAEN+AN+P+R  +                                       G ++ KRVV VSI+EAFTK+VAPQ LE+ LRLEYRSKLLNPKWA+AMAAQGSGGAYEISQRMTALVGWSSTAGF+D++VYDG  ERYV DE+MA+ LM+NNPEA RNVVKRMLEANGRGYWE  PEVLE L+E+YA AEDEIELSGGKGVRKKVLRE   EK              ++K L  E+ PV
Sbjct:  904 LSDIQEYYANTGALKKAAENIANAPDRSGKNTAAPPRAQPAPSQGRADSDQQGGK--------------GEEKKKRVVKVSIVEAFTKDVAPQELEATLRLEYRSKLLNPKWAEAMAAQGSGGAYEISQRMTALVGWSSTAGFRDQWVYDGAVERYVLDEKMAQKLMDNNPEAMRNVVKRMLEANGRGYWETTPEVLEHLREMYAAAEDEIELSGGKGVRKKVLREDGGEKSAPTPREEVKVVSAMMKNLKEERAPV 1146          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: EWM24338.1 (magnesium h subunit [Nannochloropsis gaditana])

HSP 1 Score: 289.3 bits (739), Expect = 1.200e-74
Identity = 158/257 (61.48%), Postives = 181/257 (70.43%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIELSGGKGVRKKVLREQESEKE-----------GGVVKRLAAEKTPV 247
            ++DIQEYYANTGALKKAAEN+AN+P+R  +                                       G ++ KRVV VSI+EAFTK+VAPQ LE+ LRLEYRSKLLNPKWA+AMAAQGSGGAYEISQRMTALVGWSSTAGF+D++VYDG  ERYV DE+MA+ LM+NNPEA RNVVKRMLEANGRGYWE  PEVLE L+E+YA AEDEIELSGGKGVRKKVLRE   EK              ++K L  E+ PV
Sbjct: 1485 LSDIQEYYANTGALKKAAENIANAPDRSGKNTAAPPRAQPAPSQGRADSDQQEGK--------------GEEKKKRVVKVSIVEAFTKDVAPQELEATLRLEYRSKLLNPKWAEAMAAQGSGGAYEISQRMTALVGWSSTAGFRDQWVYDGAVERYVLDEKMAQKLMDNNPEAMRNVVKRMLEANGRGYWETTPEVLEHLREMYAAAEDEIELSGGKGVRKKVLREDGGEKSAPTPREEVKVVSAMMKNLKEERAPV 1727          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: CBJ27229.1 (Magnesium chelatase subunit H, putative chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 204.5 bits (519), Expect = 3.800e-49
Identity = 108/216 (50.00%), Postives = 138/216 (63.89%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIELSGG 217
            +TDIQEYYANTGALKKAAE+                                              +   G++P R V VSI+EA+ KEVAP+ LE+ LR+EYRSKLLNPKWA+AM+ QGSGGAYEISQRMTAL+GWS T+GF D++VYDG  + Y  D++MA  L + NPEA++N++KRMLEA GRG+W     VLE +++ YA+ ED+IEL  G
Sbjct: 1241 LTDIQEYYANTGALKKAAES-----------------------------------------RQAKDADPDGQQPARRVGVSIVEAYGKEVAPRELEATLRIEYRSKLLNPKWAEAMSNQGSGGAYEISQRMTALIGWSGTSGFTDEWVYDGAADTYALDDDMAAKLRKANPEAYQNILKRMLEAKGRGFWSPEDHVLERIQQQYADVEDDIELGTG 1415          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: CEL94421.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 202.6 bits (514), Expect = 1.400e-48
Identity = 109/212 (51.42%), Postives = 135/212 (63.68%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTGALKKAA+N   S                                              GK+ K  V VSI+E+F+K V P+ LE  LR+EYR+KLLNPKWA+AMA QGSGGAYEISQRMTALVGW+ T  F + +VYDG  ERY  DE MA+ L + NPEAF+NV++RMLEANGRG+W+A  + L+ L+E+Y++ EDEIE
Sbjct: 1342 LTDIQEYYANTGALKKAADNARES---------------------------------------------AGKKGK--VKVSILESFSKAVEPRDLEQTLRMEYRTKLLNPKWAEAMAKQGSGGAYEISQRMTALVGWAGTTDFAEDWVYDGAAERYAMDEAMAEKLRKANPEAFQNVLRRMLEANGRGFWKADEKTLDKLREMYSQTEDEIE 1506          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: XP_003057619.1 (magnesium-chelatase subunit chlh-like protein chloroplast precursor [Micromonas pusilla CCMP1545] >EEH57570.1 magnesium-chelatase subunit chlh-like protein chloroplast precursor [Micromonas pusilla CCMP1545])

HSP 1 Score: 196.1 bits (497), Expect = 1.300e-46
Identity = 112/213 (52.58%), Postives = 137/213 (64.32%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKR-PKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTGAL  AA N A   E + E                                  TT   G KR P++ V  S++E F ++VAP+ LE  LRLEYR+KLLNP+WA AMA QGSGGAYEISQRMTALVGW +T+GF + +V+DG  ERYV+DE M + L + NP+AFRNV++RMLEA GRG W A  E L  LK+LYAEA+DE+E
Sbjct: 1117 LTDIQEYYANTGAL-VAAANAAK--EGLPE---------------------------------ETTDANGRKRFPRKKVACSVVETFGEDVAPRDLEETLRLEYRTKLLNPRWADAMADQGSGGAYEISQRMTALVGWGATSGFAEDWVFDGANERYVRDEAMREKLRKANPQAFRNVLRRMLEAAGRGMWNADEETLAELKQLYAEADDELE 1293          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: WP_008181318.1 (DUF3479 domain-containing protein [Moorea producens] >EGJ34164.1 hydrogenobyrinic acid a,c-diamide cobaltochelatase [Moorea producens 3L] >OLT65120.1 protoporphyrin IX magnesium chelatase [Moorea producens PAL])

HSP 1 Score: 191.8 bits (486), Expect = 2.500e-45
Identity = 104/212 (49.06%), Postives = 127/212 (59.91%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTG LK+AAE                                                    K+  + V  S +E+F+K+  P+ LE +LRLEYR+KLLNPKWA+AMA QGSGGAYEISQRMTAL+GW  TA F+D +VYD   + Y  DEEMAK L + NPEAFRN+V RMLEANGRG+WE   E L+ L+ELY  A++EIE
Sbjct: 1205 LTDIQEYYANTGGLKRAAE----------------------------------------------------KQGGKTVNASFVESFSKDTTPRKLEDLLRLEYRTKLLNPKWAEAMAHQGSGGAYEISQRMTALIGWGGTADFQDNWVYDQAADTYALDEEMAKRLRQANPEAFRNIVGRMLEANGRGFWEPDQETLQKLRELYDLADEEIE 1364          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: WP_075898807.1 (DUF3479 domain-containing protein [Moorea bouillonii] >OLT59434.1 protoporphyrin IX magnesium chelatase [Moorea bouillonii PNG])

HSP 1 Score: 191.4 bits (485), Expect = 3.300e-45
Identity = 104/212 (49.06%), Postives = 126/212 (59.43%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTG LK+AAE                                                    K+  + V  S +E+F+K+  P+ LE +LRLEYR+KLLNPKWA+AMA QGSGGAYEISQRMTAL+GW  TA F+D +VYD   + Y  DEEMAK L + NPEAFRN+V RMLEANGRG+WE   E L+ L+ELY  A+ EIE
Sbjct: 1189 LTDIQEYYANTGGLKRAAE----------------------------------------------------KQGGKTVNASFVESFSKDTTPRKLEDLLRLEYRTKLLNPKWAEAMANQGSGGAYEISQRMTALIGWGGTADFQDNWVYDQAADTYALDEEMAKRLRQANPEAFRNIVGRMLEANGRGFWEPNQETLQKLRELYDLADQEIE 1348          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: WP_070392219.1 (magnesium chelatase subunit H [Moorea producens] >AOW99743.1 magnesium chelatase subunit H [Moorea producens PAL-8-15-08-1])

HSP 1 Score: 191.0 bits (484), Expect = 4.300e-45
Identity = 104/212 (49.06%), Postives = 126/212 (59.43%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTG LK+AAE                                                    K+  + V  S +E+F+K+  P+ LE +LRLEYR+KLLNPKWA+AMA QGSGGAYEISQRMTAL+GW  TA F+D +VYD   + Y  DEEMAK L + NPEAFRN+V RMLEANGRG+WE   E L+ L+ELY  A+ EIE
Sbjct: 1125 LTDIQEYYANTGGLKRAAE----------------------------------------------------KQGGKTVNASFVESFSKDTTPRKLEDLLRLEYRTKLLNPKWAEAMANQGSGGAYEISQRMTALIGWGGTADFQDNWVYDQAADTYALDEEMAKRLQQANPEAFRNIVGRMLEANGRGFWEPDHETLQKLRELYDLADQEIE 1284          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: WP_015218585.1 (magnesium chelatase subunit H [Cyanobacterium aponinum] >AFZ52854.1 cobaltochelatase CobN subunit [Cyanobacterium aponinum PCC 10605])

HSP 1 Score: 190.7 bits (483), Expect = 5.600e-45
Identity = 103/212 (48.58%), Postives = 124/212 (58.49%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTG LK+AAE                                                    K+  + V  S +E+F+K+  P+ LE VLR+EYR+KLLNPKWAKAMA QGSGGAYEISQRMTAL+GW  T  F D +VYD   + YV D++MA  L E NPEAFRN+V RMLEANGRG+W+A  E LE +K LY   EDE+E
Sbjct: 1132 LTDIQEYYANTGGLKRAAE----------------------------------------------------KQSGKKVSASFVESFSKDTTPRKLEQVLRMEYRTKLLNPKWAKAMAEQGSGGAYEISQRMTALIGWGGTVDFTDNWVYDQAVDTYVLDQDMANKLREANPEAFRNIVGRMLEANGRGFWDADEEKLEKIKSLYEMTEDELE 1291          
BLAST of NO24G01310 vs. NCBI_GenBank
Match: WP_099434649.1 (magnesium chelatase subunit H [Cyanobacterium aponinum] >PHV64407.1 magnesium chelatase subunit H [Cyanobacterium aponinum IPPAS B-1201])

HSP 1 Score: 190.7 bits (483), Expect = 5.600e-45
Identity = 103/212 (48.58%), Postives = 124/212 (58.49%), Query Frame = 0
Query:    1 MTDIQEYYANTGALKKAAENVANSPERIAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLRLEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYDGVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELLKELYAEAEDEIE 213
            +TDIQEYYANTG LK+AAE                                                    K+  + V  S +E+F+K+  P+ LE VLR+EYR+KLLNPKWAKAMA QGSGGAYEISQRMTAL+GW  T  F D +VYD   + YV D++MA  L E NPEAFRN+V RMLEANGRG+W+A  E LE +K LY   EDE+E
Sbjct: 1132 LTDIQEYYANTGGLKRAAE----------------------------------------------------KQSGKKVSASFVESFSKDTTPRKLEQVLRMEYRTKLLNPKWAKAMAEQGSGGAYEISQRMTALIGWGGTVDFTDNWVYDQAVDTYVLDQDMANKLREANPEAFRNIVGRMLEANGRGFWDADEEKLEKIKSLYEMTEDELE 1291          
The following BLAST results are available for this feature:
BLAST of NO24G01310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855588.11.200e-7461.48protoporphyrin IX Mg-chelatase subunit H [Nannochl... [more]
EWM24338.11.200e-7461.48magnesium h subunit [Nannochloropsis gaditana][more]
CBJ27229.13.800e-4950.00Magnesium chelatase subunit H, putative chloroplas... [more]
CEL94421.11.400e-4851.42unnamed protein product [Vitrella brassicaformis C... [more]
XP_003057619.11.300e-4652.58magnesium-chelatase subunit chlh-like protein chlo... [more]
WP_008181318.12.500e-4549.06DUF3479 domain-containing protein [Moorea producen... [more]
WP_075898807.13.300e-4549.06DUF3479 domain-containing protein [Moorea bouillon... [more]
WP_070392219.14.300e-4549.06magnesium chelatase subunit H [Moorea producens] >... [more]
WP_015218585.15.600e-4548.58magnesium chelatase subunit H [Cyanobacterium apon... [more]
WP_099434649.15.600e-4548.58magnesium chelatase subunit H [Cyanobacterium apon... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01310.1NO24G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01310.1NO24G01310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01310 ID=NO24G01310|Name=NO24G01310|organism=Nannochloropsis oceanica|type=gene|length=944bp
ATGACGGACATTCAAGAGTATTATGCGAACACGGgtgaggagctggacga
gggaggggaggagggagggagggaggcagagagggattgaaagaggggga
aaggccagttgtttgtccatcagttttctggaacaaggcatggctgcatc
ttcacttttgttttgcctcgctttgagtgtattccctgaatcatacatca
cttaattcaccctttttccctcccaatccagGCGCTCTCAAGAAAGCGGC
CGAAAACGTGGCCAACTCGCCGGAGCGTATCGCAGAGGAGGAAGCTGAAG
AGAAAGAAAACACACGCAGGGAGGATGCACAATCCTTCAGCAGCAGCACC
ACCACCACGCAGGCACAACCACATCCTCCTTTCCCCAGCACCACCTCCAC
CTTGGGAGGAAAACGGCCGAAAAGGGTCGTTCCCGTCAGTATAATTGAAG
CCTTTACCAAAGAAGTTGCCCCGCAGTCCCTCGAATCTGTCCTTCGCCTC
GAGTACCGCTCCAAGCTCCTCAATCCGAAATGGGCCAAGGCCATGGCCGC
CCAAGGCTCCGGTGGTGCCTACGAGATCTCCCAGAGAATGACGGCGCTGG
TCGGCTGGAGCAGCACGGCGGGTTTCAAGGATAAATTTGTATACGACGGT
GTGTGTGAGAGGTACGTCCAGGACGAAGAGATGGCGAAAACCTTGATGGA
AAACAACCCCGAGGCGTTCCGGAACGTGGTCAAGAGGATGTTGGAGGCGA
ATGGGAGGGGGTATTGGGAGGCGGGGCCTGAGGTATTGGAGCTATTGAAG
GAATTATATGCAGAGGCGGAGGATGAGATTGAGTTGAGTGGGGGGAAAGG
GGTCAGAAAGAAAGTGCTGAGGGAACAGGAAAGTGAGAAGGAAGGAGGGG
TAGTGAAACGTCTAGCGGCAGAGAAAACGCCAGTGTCGATGTGA
back to top

protein sequence of NO24G01310.1

>NO24G01310.1-protein ID=NO24G01310.1-protein|Name=NO24G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MTDIQEYYANTGALKKAAENVANSPERIAEEEAEEKENTRREDAQSFSSS
TTTTQAQPHPPFPSTTSTLGGKRPKRVVPVSIIEAFTKEVAPQSLESVLR
LEYRSKLLNPKWAKAMAAQGSGGAYEISQRMTALVGWSSTAGFKDKFVYD
GVCERYVQDEEMAKTLMENNPEAFRNVVKRMLEANGRGYWEAGPEVLELL
KELYAEAEDEIELSGGKGVRKKVLREQESEKEGGVVKRLAAEKTPVSM*
back to top
Synonyms
Publications