NO24G01210, NO24G01210 (gene) Nannochloropsis oceanica

Overview
NameNO24G01210
Unique NameNO24G01210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1923
Alignment locationchr24:329786..331708 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:329786..331708 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G01210 vs. NCBI_GenBank
Match: XP_005853909.1 (hypothetical protein NGA_0442000 [Nannochloropsis gaditana CCMP526] >EKU22452.1 hypothetical protein NGA_0442000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 70.1 bits (170), Expect = 4.600e-9
Identity = 79/102 (77.45%), Postives = 85/102 (83.33%), Query Frame = 0 
Query:    1 MDSIKAKLGEVAHVVSRKANNTVEDIXXXXXXXXXXXXXXXXXXXXXXFAGDVGEKLKPAADXXXXXXXXXXXXXXXXXXXXXXAISGATHDVIDKVKELGK 103
            MD +KAKLG++AHVV+RKA NTVEDIXXXXXXXXXXXXXXXXXXXXX FA  VGEKLKPA D   X XXXXXXXXXXXXXXXX AISG  H V DK K++ K
Sbjct:    1 MDDLKAKLGDMAHVVARKATNTVEDIXXXXXXXXXXXXXXXXXXXXXHFAEGVGEKLKPATDKIGXVXXXXXXXXXXXXXXXXAAISGGAHSVADKFKDMTK 102
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BLAST of NO24G01210 vs. NCBI_GenBank
Match: EWM24324.1 (Apolipoprotein/apolipophorin [Nannochloropsis gaditana])

HSP 1 Score: 68.9 bits (167), Expect = 1.000e-8
Identity = 78/102 (76.47%), Postives = 85/102 (83.33%), Query Frame = 0 
Query:    1 MDSIKAKLGEVAHVVSRKANNTVEDIXXXXXXXXXXXXXXXXXXXXXXFAGDVGEKLKPAADXXXXXXXXXXXXXXXXXXXXXXAISGATHDVIDKVKELGK 103
            MD +KAKLG++AHVV+RKA NTVEDIXXXXXXXXXXXXXXXXXXXXX FA  VGEKLKPA D   X XXXXXXXXXXXXXXXX A+SG  H V DK K++ K
Sbjct:    1 MDDLKAKLGDMAHVVARKATNTVEDIXXXXXXXXXXXXXXXXXXXXXHFAEGVGEKLKPATDKIGXVXXXXXXXXXXXXXXXXAAMSGGAHSVADKFKDMTK 102
The following BLAST results are available for this feature:
BLAST of NO24G01210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853909.14.600e-977.45hypothetical protein NGA_0442000 [Nannochloropsis ... [more]
EWM24324.11.000e-876.47Apolipoprotein/apolipophorin [Nannochloropsis gadi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002870NSK002870Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01210.1NO24G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100047g2gene6145Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01210.1NO24G01210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01210 ID=NO24G01210|Name=NO24G01210|organism=Nannochloropsis oceanica|type=gene|length=1923bp
GGAGCGACGAATGTGCCGGGCGGGCGAATTATTTAGATTGCCTTCGCTTT
TACCAGAAGATGCGCGGCGTCGTCCTGTTGCGATCGGCACTGGCTGCGGA
TTGAGCTACATTATGGGGAAGTGTGATCGTGTGTACCAGTTCTCTGGCTG
CCGCAGCAAGAAAGGATGCAGCAGGAACAAACTGCTTGGACAAGTAACAG
AACAAATCTTCAAGAACAGGACTCTAGAGTAGGCGCGCATTAGTGAACCC
ACAGACTGACAGCAGCCAGCTTGTTTTCTGTACATATGCAGAGCTGGAGC
GGCGGGTGTAGGAGACCCACAGAGACTTCATGCCATTTTGCGTTTTACCT
CAATCACTCGGAACTGTTTGTTCCTCCTTCAAAACAACCGACTTGAACTT
TTATATATCTATTACGCACGCACTACAGGTCAACACCACCCTCAAGTACT
CAAAGCAAGATGGACAGCATCAAAGgtatgcagaggatgggggtggtaat
atgaaagggcgaaggggggaagagggggctggggcgccctgagggcgggg
agaatggacacaacccctccagctaacagtagtgacgaagatgcgggatg
ggaatgcaggggaaaatatgcccggttattgctaatagtgtgcacgttaa
ccgtgggcttcatttgcttgcatgcttaccctattacgttggcgccggtg
ctgtgtaaaaagtcaagcaaaggtccctattcaaggccgccacatcccta
ccctactcagcctgacgggaccggatcaaggaaacgaagcacgtctactg
cacatcatcttcgtgttgcgtgcttttcaattgccgtaccctacactgtt
ggcagtcaatctcacctgacttaccccatcccattcccctggaacaaaca
cagCCAAGCTCGGCGAGGTCGCCCACGTCGTCTCGCGCAAGGCTAACAAC
ACTGTGGAGGATATCAAGAGCGGCGATGCTCCGCATATCGTGGCGCGCAA
GGCTAAGAATACAGTCGAGGATGTGAAGCACTTTGCTGGAGATGTGGGGG
AGAAGCTTAAGCCGGCTGCGGACAAGGCCGGAGAGGTCGCCCAGCAGgtg
cgtcagggaacggaagaagggcgtgtgtttgatgttgatcttggatatgt
gtcggaataaaattgacatgtctcatggaaataaggatgaagatcttcat
agaagggaagaaggacgtgtgtttaatgttgatcatggatatgtgtcgga
aaaaattgtcatgtctcatggaaataagcaagaagatccactttcttacc
cctcttccttttccgtttttctctcgcccctcccttacttgttgcagACC
TACGAGTCCATGAAGCCCGGCTTGGAGAAGGCTGGTACTGCCATAAGCGG
GGCTACTCATGACGTGATCGACAAGgcaagtatctacctgagattattga
tacttctctcacatattttaaactaaatgagctttttagtcaagctcgca
tcaacaaatttaagcagcgaaagacatccgccaatgttgcatatcttttt
attccttatcttacattttctcctttacccctcgttcccttccttccatc
ttatatgtcatcagGTGAAGGAACTTGGAAAATAAGAAATGTGTGTTTGC
ACATGACAATTTACACTATTAATGATGATGGACCAGCAGCGATTCCTTGA
TAAACCAGGCGAAACATCAAATGTCATCAAGTCTTTTGGTGATTGCTGAT
TGATGGATTCGGATGAAGAGCAGCCCCCCTCTTGTATGTTTGTGGTGCCT
CCCCAGAGAAGAAGGGCGTGAGGGAGACAGGCTTATTGTTTCCTGTAATG
GATCATTTCTCGCATGCCATTCGCGGCATGCAAAGATGAGAAAGAAAAAA
TAAGTAATGAAATGAGGGGTGGA
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protein sequence of NO24G01210.1

>NO24G01210.1-protein ID=NO24G01210.1-protein|Name=NO24G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MDSIKAKLGEVAHVVSRKANNTVEDIKSGDAPHIVARKAKNTVEDVKHFA
GDVGEKLKPAADKAGEVAQQTYESMKPGLEKAGTAISGATHDVIDKVKEL
GK*
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Synonyms
Publications