NO24G01210.1, NO24G01210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01210.1
Unique NameNO24G01210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1056
Alignment locationchr24:329786..331708 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:329786..331708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01210.1 vs.
Match: XP_005853909.1 (hypothetical protein NGA_0442000 [Nannochloropsis gaditana CCMP526]; EKU22452.1 hypothetical protein NGA_0442000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 151.8 bits (382), Expect = 1.200e-33
Identity = 76/102 (74.51%), Postives = 84/102 (82.35%), Query Frame = 0 
Query:    1 MDSIKAKLGEVAHVVSRKANNTVEDIKSGDAPHIVARKAKNTVEDVKHFAGDVGEKLKPAADKAGEVAQQTYESMKPGLEKAGTAISGATHDVIDKVKELGK 103
            MD +KAKLG++AHVV+RKA NTVEDIKSGDA HI+ARKAKNT EDVKHFA  VGEKLKPA DK GEVA QTYES KP L+KAG AISG  H V DK K++ K
Sbjct:    1 MDDLKAKLGDMAHVVARKATNTVEDIKSGDAAHIIARKAKNTGEDVKHFAEGVGEKLKPATDKIGEVAHQTYESAKPSLDKAGAAISGGAHSVADKFKDMTK 102
The following BLAST results are available for this feature:
BLAST of NO24G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853909.11.200e-3374.51hypothetical protein NGA_0442000 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01210NO24G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01210.1NO24G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01210.1.cds1NO24G01210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01210.1.cds2NO24G01210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01210.1.cds3NO24G01210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01210.1.cds4NO24G01210.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01210.1 ID=NO24G01210.1|Name=NO24G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
GGAGCGACGAATGTGCCGGGCGGGCGAATTATTTAGATTGCCTTCGCTTT
TACCAGAAGATGCGCGGCGTCGTCCTGTTGCGATCGGCACTGGCTGCGGA
TTGAGCTACATTATGGGGAAGTGTGATCGTGTGTACCAGTTCTCTGGCTG
CCGCAGCAAGAAAGGATGCAGCAGGAACAAACTGCTTGGACAAGTAACAG
AACAAATCTTCAAGAACAGGACTCTAGAGTAGGCGCGCATTAGTGAACCC
ACAGACTGACAGCAGCCAGCTTGTTTTCTGTACATATGCAGAGCTGGAGC
GGCGGGTGTAGGAGACCCACAGAGACTTCATGCCATTTTGCGTTTTACCT
CAATCACTCGGAACTGTTTGTTCCTCCTTCAAAACAACCGACTTGAACTT
TTATATATCTATTACGCACGCACTACAGGTCAACACCACCCTCAAGTACT
CAAAGCAAGATGGACAGCATCAAAGCCAAGCTCGGCGAGGTCGCCCACGT
CGTCTCGCGCAAGGCTAACAACACTGTGGAGGATATCAAGAGCGGCGATG
CTCCGCATATCGTGGCGCGCAAGGCTAAGAATACAGTCGAGGATGTGAAG
CACTTTGCTGGAGATGTGGGGGAGAAGCTTAAGCCGGCTGCGGACAAGGC
CGGAGAGGTCGCCCAGCAGACCTACGAGTCCATGAAGCCCGGCTTGGAGA
AGGCTGGTACTGCCATAAGCGGGGCTACTCATGACGTGATCGACAAGGTG
AAGGAACTTGGAAAATAAGAAATGTGTGTTTGCACATGACAATTTACACT
ATTAATGATGATGGACCAGCAGCGATTCCTTGATAAACCAGGCGAAACAT
CAAATGTCATCAAGTCTTTTGGTGATTGCTGATTGATGGATTCGGATGAA
GAGCAGCCCCCCTCTTGTATGTTTGTGGTGCCTCCCCAGAGAAGAAGGGC
GTGAGGGAGACAGGCTTATTGTTTCCTGTAATGGATCATTTCTCGCATGC
CATTCGCGGCATGCAAAGATGAGAAAGAAAAAATAAGTAATGAAATGAGG
GGTGGA
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protein sequence of NO24G01210.1

>NO24G01210.1-protein ID=NO24G01210.1-protein|Name=NO24G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MDSIKAKLGEVAHVVSRKANNTVEDIKSGDAPHIVARKAKNTVEDVKHFA
GDVGEKLKPAADKAGEVAQQTYESMKPGLEKAGTAISGATHDVIDKVKEL
GK*
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mRNA from alignment at chr24:329786..331708-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01210.1 ID=NO24G01210.1|Name=NO24G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp|location=Sequence derived from alignment at chr24:329786..331708- (Nannochloropsis oceanica)
GGAGCGACGAATGTGCCGGGCGGGCGAATTATTTAGATTGCCTTCGCTTT
TACCAGAAGATGCGCGGCGTCGTCCTGTTGCGATCGGCACTGGCTGCGGA
TTGAGCTACATTATGGGGAAGTGTGATCGTGTGTACCAGTTCTCTGGCTG
CCGCAGCAAGAAAGGATGCAGCAGGAACAAACTGCTTGGACAAGTAACAG
AACAAATCTTCAAGAACAGGACTCTAGAGTAGGCGCGCATTAGTGAACCC
ACAGACTGACAGCAGCCAGCTTGTTTTCTGTACATATGCAGAGCTGGAGC
GGCGGGTGTAGGAGACCCACAGAGACTTCATGCCATTTTGCGTTTTACCT
CAATCACTCGGAACTGTTTGTTCCTCCTTCAAAACAACCGACTTGAACTT
TTATATATCTATTACGCACGCACTACAGGTCAACACCACCCTCAAGTACT
CAAAGCAAGATGGACAGCATCAAAGGTATGCAGAGGATGGGGGTGGTAAT
ATGAAAGGGCGAAGGGGGGAAGAGGGGGCTGGGGCGCCCTGAGGGCGGGG
AGAATGGACACAACCCCTCCAGCTAACAGTAGTGACGAAGATGCGGGATG
GGAATGCAGGGGAAAATATGCCCGGTTATTGCTAATAGTGTGCACGTTAA
CCGTGGGCTTCATTTGCTTGCATGCTTACCCTATTACGTTGGCGCCGGTG
CTGTGTAAAAAGTCAAGCAAAGGTCCCTATTCAAGGCCGCCACATCCCTA
CCCTACTCAGCCTGACGGGACCGGATCAAGGAAACGAAGCACGTCTACTG
CACATCATCTTCGTGTTGCGTGCTTTTCAATTGCCGTACCCTACACTGTT
GGCAGTCAATCTCACCTGACTTACCCCATCCCATTCCCCTGGAACAAACA
CAGCCAAGCTCGGCGAGGTCGCCCACGTCGTCTCGCGCAAGGCTAACAAC
ACTGTGGAGGATATCAAGAGCGGCGATGCTCCGCATATCGTGGCGCGCAA
GGCTAAGAATACAGTCGAGGATGTGAAGCACTTTGCTGGAGATGTGGGGG
AGAAGCTTAAGCCGGCTGCGGACAAGGCCGGAGAGGTCGCCCAGCAGGTG
CGTCAGGGAACGGAAGAAGGGCGTGTGTTTGATGTTGATCTTGGATATGT
GTCGGAATAAAATTGACATGTCTCATGGAAATAAGGATGAAGATCTTCAT
AGAAGGGAAGAAGGACGTGTGTTTAATGTTGATCATGGATATGTGTCGGA
AAAAATTGTCATGTCTCATGGAAATAAGCAAGAAGATCCACTTTCTTACC
CCTCTTCCTTTTCCGTTTTTCTCTCGCCCCTCCCTTACTTGTTGCAGACC
TACGAGTCCATGAAGCCCGGCTTGGAGAAGGCTGGTACTGCCATAAGCGG
GGCTACTCATGACGTGATCGACAAGGCAAGTATCTACCTGAGATTATTGA
TACTTCTCTCACATATTTTAAACTAAATGAGCTTTTTAGTCAAGCTCGCA
TCAACAAATTTAAGCAGCGAAAGACATCCGCCAATGTTGCATATCTTTTT
ATTCCTTATCTTACATTTTCTCCTTTACCCCTCGTTCCCTTCCTTCCATC
TTATATGTCATCAGGTGAAGGAACTTGGAAAATAAGAAATGTGTGTTTGC
ACATGACAATTTACACTATTAATGATGATGGACCAGCAGCGATTCCTTGA
TAAACCAGGCGAAACATCAAATGTCATCAAGTCTTTTGGTGATTGCTGAT
TGATGGATTCGGATGAAGAGCAGCCCCCCTCTTGTATGTTTGTGGTGCCT
CCCCAGAGAAGAAGGGCGTGAGGGAGACAGGCTTATTGTTTCCTGTAATG
GATCATTTCTCGCATGCCATTCGCGGCATGCAAAGATGAGAAAGAAAAAA
TAAGTAATGAAATGAGGGGTGGA
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Coding sequence (CDS) from alignment at chr24:329786..331708-

>NO24G01210.1 ID=NO24G01210.1|Name=NO24G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at chr24:329786..331708- (Nannochloropsis oceanica)
ATGGACAGCATCAAAGCCAAGCTCGGCGAGGTCGCCCACGTCGTCTCGCG
CAAGGCTAACAACACTGTGGAGGATATCAAGAGCGGCGATGCTCCGCATA
TCGTGGCGCGCAAGGCTAAGAATACAGTCGAGGATGTGAAGCACTTTGCT
GGAGATGTGGGGGAGAAGCTTAAGCCGGCTGCGGACAAGGCCGGAGAGGT
CGCCCAGCAGACCTACGAGTCCATGAAGCCCGGCTTGGAGAAGGCTGGTA
CTGCCATAAGCGGGGCTACTCATGACGTGATCGACAAGGTGAAGGAACTT
GGAAAATAA
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Synonyms
Publications