NO24G01180, NO24G01180 (gene) Nannochloropsis oceanica

Overview
NameNO24G01180
Unique NameNO24G01180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1344
Alignment locationchr24:324289..325632 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:324289..325632 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009890EI24
Homology
The following BLAST results are available for this feature:
BLAST of NO24G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01180.1NO24G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|131879gene_7345Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01180.1NO24G01180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01180 ID=NO24G01180|Name=NO24G01180|organism=Nannochloropsis oceanica|type=gene|length=1344bp
ATGCTCTCGCTTGCACTGGTGCAGGAACGgtagggtgacgtgatggcgtc
atgcagggagcgagggcagttggggagggagggagtgaggaaataagaga
agcctagcagagaagggcatgttttgacgtttgccgcttttgggcttgtc
gcaaaagaatttcctttactgctggctgccaagctctgaccttccctccc
gccctccctactctcctcccttcctccgtcagGATCGAGCTCGCCCTCTC
CCATTTCTTCGAGGGCTTGTCGGACTCCTTGGCATTGACACGCACGTGGA
CCTTTTGGGCATCGTCGGAGGTGGTGCGGGAGAACGCGGGCAAGgtgaga
cagggagggagggacggtgaattgataggctagcacaaacgtttcatccc
tccctccctccctccctccttacttctatcccctacttaccttcccttcc
tcccttccccctccctcttctcacccacctttaagTGTTTCCTCCTCAAC
AGCGGCCTCCTCCTGGGGTCCCACCTTCTCTACTCTCGCCTCCTTTATCC
CTTCCTCCTCCTCCTAGGCCGCTGCATCTACACCTACCTCCTGCCCCTCC
TTCTGACGGAAAGGGAGGGAGGAAAGGAAGAAGGGTGGGTGACTGCGTGG
AAGGAGCCTCCTGCGAAAGTGGAGGCCTTGgtgagcgggggttttatgta
gtctaccaggtgaggagggagagagagagggaaggagggagggatgtgct
ataccacaggacttcacgcctagggtctctgtgggtcaccctccctccct
ccttccctccttctctccctagCTCGCCTGGATGTGGCCGGTCTTCCTAC
TGGCTTTTTTGGTCTCCATCGGACTGAACGACGCGGTGGCGGAGGCGGgt
aaggagggagagagggaaggggggagggagggagggcgagacggttgacc
tcgcgtaaataaattcacgttcatcataattttcttctttcatccctccc
tccgtccctcccttcgctctatgcactgtagCCTACCTACACCAGCGGGC
TAGGGGGTCTGCTGCAGCCACGGAGATACCGAGGgtagggagggagggag
ggaaggagcgagggaaggagggagggaaggcaggaccgctctcctctgtc
cctggtgctagttttttttttgtcttttttatatccctcatccctccatc
catccacccctctagCTCGTGGGCGACCTCGTCTCTCGCCTCCTGACGGT
CTACGCCCTCCTCTTCAACTCCCTCCTCCTCCTCCTCCTTCCCCCCTTTC
TCCTCCTCCTCCCTCCCCCTTCTCCTTCCCTCCCTCACTCCTGA
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protein sequence of NO24G01180.1

>NO24G01180.1-protein ID=NO24G01180.1-protein|Name=NO24G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MLSLALVQERIELALSHFFEGLSDSLALTRTWTFWASSEVVRENAGKCFL
LNSGLLLGSHLLYSRLLYPFLLLLGRCIYTYLLPLLLTEREGGKEEGWVT
AWKEPPAKVEALLAWMWPVFLLAFLVSIGLNDAVAEAAYLHQRARGSAAA
TEIPRLVGDLVSRLLTVYALLFNSLLLLLLPPFLLLLPPPSPSLPHS*
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Synonyms
Publications