NO24G01180.1, NO24G01180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01180.1
Unique NameNO24G01180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length594
Alignment locationchr24:324289..325632 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:324289..325632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G01180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01180NO24G01180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01180.1NO24G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01180.1.cds1NO24G01180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01180.1.cds2NO24G01180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01180.1.cds3NO24G01180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01180.1.cds4NO24G01180.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01180.1.cds5NO24G01180.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01180.1.cds6NO24G01180.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01180.1 ID=NO24G01180.1|Name=NO24G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=594bp
ATGCTCTCGCTTGCACTGGTGCAGGAACGGATCGAGCTCGCCCTCTCCCA
TTTCTTCGAGGGCTTGTCGGACTCCTTGGCATTGACACGCACGTGGACCT
TTTGGGCATCGTCGGAGGTGGTGCGGGAGAACGCGGGCAAGTGTTTCCTC
CTCAACAGCGGCCTCCTCCTGGGGTCCCACCTTCTCTACTCTCGCCTCCT
TTATCCCTTCCTCCTCCTCCTAGGCCGCTGCATCTACACCTACCTCCTGC
CCCTCCTTCTGACGGAAAGGGAGGGAGGAAAGGAAGAAGGGTGGGTGACT
GCGTGGAAGGAGCCTCCTGCGAAAGTGGAGGCCTTGCTCGCCTGGATGTG
GCCGGTCTTCCTACTGGCTTTTTTGGTCTCCATCGGACTGAACGACGCGG
TGGCGGAGGCGGCCTACCTACACCAGCGGGCTAGGGGGTCTGCTGCAGCC
ACGGAGATACCGAGGCTCGTGGGCGACCTCGTCTCTCGCCTCCTGACGGT
CTACGCCCTCCTCTTCAACTCCCTCCTCCTCCTCCTCCTTCCCCCCTTTC
TCCTCCTCCTCCCTCCCCCTTCTCCTTCCCTCCCTCACTCCTGA
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protein sequence of NO24G01180.1

>NO24G01180.1-protein ID=NO24G01180.1-protein|Name=NO24G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MLSLALVQERIELALSHFFEGLSDSLALTRTWTFWASSEVVRENAGKCFL
LNSGLLLGSHLLYSRLLYPFLLLLGRCIYTYLLPLLLTEREGGKEEGWVT
AWKEPPAKVEALLAWMWPVFLLAFLVSIGLNDAVAEAAYLHQRARGSAAA
TEIPRLVGDLVSRLLTVYALLFNSLLLLLLPPFLLLLPPPSPSLPHS*
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mRNA from alignment at chr24:324289..325632+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01180.1 ID=NO24G01180.1|Name=NO24G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp|location=Sequence derived from alignment at chr24:324289..325632+ (Nannochloropsis oceanica)
ATGCTCTCGCTTGCACTGGTGCAGGAACGGTAGGGTGACGTGATGGCGTC
ATGCAGGGAGCGAGGGCAGTTGGGGAGGGAGGGAGTGAGGAAATAAGAGA
AGCCTAGCAGAGAAGGGCATGTTTTGACGTTTGCCGCTTTTGGGCTTGTC
GCAAAAGAATTTCCTTTACTGCTGGCTGCCAAGCTCTGACCTTCCCTCCC
GCCCTCCCTACTCTCCTCCCTTCCTCCGTCAGGATCGAGCTCGCCCTCTC
CCATTTCTTCGAGGGCTTGTCGGACTCCTTGGCATTGACACGCACGTGGA
CCTTTTGGGCATCGTCGGAGGTGGTGCGGGAGAACGCGGGCAAGGTGAGA
CAGGGAGGGAGGGACGGTGAATTGATAGGCTAGCACAAACGTTTCATCCC
TCCCTCCCTCCCTCCCTCCTTACTTCTATCCCCTACTTACCTTCCCTTCC
TCCCTTCCCCCTCCCTCTTCTCACCCACCTTTAAGTGTTTCCTCCTCAAC
AGCGGCCTCCTCCTGGGGTCCCACCTTCTCTACTCTCGCCTCCTTTATCC
CTTCCTCCTCCTCCTAGGCCGCTGCATCTACACCTACCTCCTGCCCCTCC
TTCTGACGGAAAGGGAGGGAGGAAAGGAAGAAGGGTGGGTGACTGCGTGG
AAGGAGCCTCCTGCGAAAGTGGAGGCCTTGGTGAGCGGGGGTTTTATGTA
GTCTACCAGGTGAGGAGGGAGAGAGAGAGGGAAGGAGGGAGGGATGTGCT
ATACCACAGGACTTCACGCCTAGGGTCTCTGTGGGTCACCCTCCCTCCCT
CCTTCCCTCCTTCTCTCCCTAGCTCGCCTGGATGTGGCCGGTCTTCCTAC
TGGCTTTTTTGGTCTCCATCGGACTGAACGACGCGGTGGCGGAGGCGGGT
AAGGAGGGAGAGAGGGAAGGGGGGAGGGAGGGAGGGCGAGACGGTTGACC
TCGCGTAAATAAATTCACGTTCATCATAATTTTCTTCTTTCATCCCTCCC
TCCGTCCCTCCCTTCGCTCTATGCACTGTAGCCTACCTACACCAGCGGGC
TAGGGGGTCTGCTGCAGCCACGGAGATACCGAGGGTAGGGAGGGAGGGAG
GGAAGGAGCGAGGGAAGGAGGGAGGGAAGGCAGGACCGCTCTCCTCTGTC
CCTGGTGCTAGTTTTTTTTTTGTCTTTTTTATATCCCTCATCCCTCCATC
CATCCACCCCTCTAGCTCGTGGGCGACCTCGTCTCTCGCCTCCTGACGGT
CTACGCCCTCCTCTTCAACTCCCTCCTCCTCCTCCTCCTTCCCCCCTTTC
TCCTCCTCCTCCCTCCCCCTTCTCCTTCCCTCCCTCACTCCTGA
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Coding sequence (CDS) from alignment at chr24:324289..325632+

>NO24G01180.1 ID=NO24G01180.1|Name=NO24G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr24:324289..325632+ (Nannochloropsis oceanica)
ATGCTCTCGCTTGCACTGGTGCAGGAACGGATCGAGCTCGCCCTCTCCCA
TTTCTTCGAGGGCTTGTCGGACTCCTTGGCATTGACACGCACGTGGACCT
TTTGGGCATCGTCGGAGGTGGTGCGGGAGAACGCGGGCAAGTGTTTCCTC
CTCAACAGCGGCCTCCTCCTGGGGTCCCACCTTCTCTACTCTCGCCTCCT
TTATCCCTTCCTCCTCCTCCTAGGCCGCTGCATCTACACCTACCTCCTGC
CCCTCCTTCTGACGGAAAGGGAGGGAGGAAAGGAAGAAGGGTGGGTGACT
GCGTGGAAGGAGCCTCCTGCGAAAGTGGAGGCCTTGCTCGCCTGGATGTG
GCCGGTCTTCCTACTGGCTTTTTTGGTCTCCATCGGACTGAACGACGCGG
TGGCGGAGGCGGCCTACCTACACCAGCGGGCTAGGGGGTCTGCTGCAGCC
ACGGAGATACCGAGGCTCGTGGGCGACCTCGTCTCTCGCCTCCTGACGGT
CTACGCCCTCCTCTTCAACTCCCTCCTCCTCCTCCTCCTTCCCCCCTTTC
TCCTCCTCCTCCCTCCCCCTTCTCCTTCCCTCCCTCACTCCTGA
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Synonyms
Publications