NO24G01150, NO24G01150 (gene) Nannochloropsis oceanica

Overview
NameNO24G01150
Unique NameNO24G01150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2420
Alignment locationchr24:318607..321026 -

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Properties
Property NameValue
DescriptionZinc transporter ZitB
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:318607..321026 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008324cation transmembrane transporter activity
GO:0008324cation transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006812cation transport
GO:0055085transmembrane transport
GO:0098655cation transmembrane transport
GO:0055085transmembrane transport
GO:0006812cation transport
Vocabulary: INTERPRO
TermDefinition
IPR027469Cation_efflux_TMD
IPR002524Cation_efflux
Homology
BLAST of NO24G01150 vs. NCBI_GenBank
Match: OGW46597.1 (hypothetical protein A2078_11425 [Nitrospirae bacterium GWC2_57_9])

HSP 1 Score: 71.2 bits (173), Expect = 6.600e-9
Identity = 46/126 (36.51%), Postives = 72/126 (57.14%), Query Frame = 0
Query:    1 MMGAELVVGVLSNSLGMLGDAGHMLADG----------REGGIARTRRRKRG--RVGLWAGLINSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFLVHDLGALTQSSRGS 115
            MM AE++ G+LSNSL +L DAGHM  D           +   +  T R+  G  R+ + A  +N   LV ++ Y++YEAY RIL+  P VG   +L  A +GL+ NV+G F+++   + + + RG+
Sbjct:   53 MMAAEIIGGLLSNSLALLSDAGHMFTDNLALLLSFFALKFASMPATDRKTFGFYRLEILAAFVNGTVLVFMSFYIMYEAYLRILHPQP-VGGRLMLVVALIGLVANVIGAFILNKHSSTSLNIRGA 177          
BLAST of NO24G01150 vs. NCBI_GenBank
Match: WP_046524687.1 (cation transporter [Bacillus campisalis] >KKK37144.1 zinc transporter ZitB [Bacillus campisalis])

HSP 1 Score: 69.7 bits (169), Expect = 1.900e-8
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 0
Query:    2 MGAELVVGVLSNSLGMLGDAGHMLADGREGGI----------ARTRRRKRG--RVGLWAGLINSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFLV 102
            M  ELV G+L+NSL +L DAGHML+D    G+          A T  +  G  R  + A +IN  TL+ ++LY+ YEAY RIL   PEV    +L  AF+GLL+N+L  +++
Sbjct:   36 MFVELVGGLLTNSLALLSDAGHMLSDAAALGLSLFAIKLGEKAATSSKTFGYKRFEILAAMINGATLIIISLYIFYEAYHRIL-QPPEVQSLGMLLIAFIGLLVNILAAWIL 146          
BLAST of NO24G01150 vs. NCBI_GenBank
Match: OGO19110.1 (hypothetical protein A2144_00545 [Chloroflexi bacterium RBG_16_50_9])

HSP 1 Score: 69.7 bits (169), Expect = 1.900e-8
Identity = 50/113 (44.25%), Postives = 65/113 (57.52%), Query Frame = 0
Query:    1 MMGAELVVGVLSNSLGMLGDAGHMLADGREGGIA----------RTRRRKRG--RVGLWAGLINSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFLV 102
            +M AE+V G+LSNSL +LGDAGHML DG   G++           T  +  G  RV + A L N +TLV VA Y+ YEAY R L   P V    +L  A LGL+ N+ G+ L+
Sbjct:   26 IMLAEVVGGILSNSLALLGDAGHMLVDGLAVGLSLFAITMAARPATLSKTYGYHRVEIMAALANGVTLVLVAAYIFYEAYQRFL-DPPVVRAPLMLVVASLGLVANLAGMLLL 137          
BLAST of NO24G01150 vs. NCBI_GenBank
Match: OGW35933.1 (hypothetical protein A2X58_12140 [Nitrospirae bacterium GWC2_56_14])

HSP 1 Score: 68.2 bits (165), Expect = 5.600e-8
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 0
Query:    1 MMGAELVVGVLSNSLGMLGDAGHMLADG----------REGGIARTRRRKRG--RVGLWAGLINSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFLV 102
            MM AELV G+LSNSL +L DAGHML D           +   +  T RR  G  R+ + A LIN + LV +++Y++YEAY RIL   P  G   +L  A +GL+ N++G  ++
Sbjct:    1 MMVAELVGGLLSNSLALLSDAGHMLTDNAALLLSFFAMKFATMPATDRRTFGFYRLEILAALINGVILVLISVYIIYEAYQRILDPQPVQG-TLMLVVAIIGLVANIIGALVL 112          
BLAST of NO24G01150 vs. NCBI_GenBank
Match: WP_053362932.1 (cation transporter [Bacillus sp. FJAT-27251])

HSP 1 Score: 67.4 bits (163), Expect = 9.500e-8
Identity = 46/112 (41.07%), Postives = 65/112 (58.04%), Query Frame = 0
Query:    2 MGAELVVGVLSNSLGMLGDAGHMLADGREGGIA----------RTRRRKRG--RVGLWAGLINSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFLV 102
            M  ELV GVL+NSL +L DAGHML+D    G++           T  +  G  R  + A +IN  TL+ +++Y+ YEAY RIL   PEV    +L  AF GLL+N+L  +++
Sbjct:   36 MFVELVGGVLTNSLALLSDAGHMLSDAAALGLSLFAIKLGEKTATSSKTFGYKRFEILAAMINGATLIIISVYIFYEAYHRIL-QPPEVQSLGMLLIAFTGLLVNILAAWIL 146          
BLAST of NO24G01150 vs. NCBI_GenBank
Match: WP_090925392.1 (cation transporter [Salibacterium qingdaonense] >SFL55254.1 cobalt-zinc-cadmium efflux system protein [Salibacterium qingdaonense])

HSP 1 Score: 67.4 bits (163), Expect = 9.500e-8
Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = 0
Query:    2 MGAELVVGVLSNSLGMLGDAGHMLADG------------REGGIARTRRRKRGRVGLWAGLINSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFLVHDLG 106
            M  E + G+++NSL +L DAGHML+D              E  ++R++     R  + A L N  TL+ +ALY++YEAY R +   P+V    +L   FLGLL+N+L  +++   G
Sbjct:   29 MIVEAIGGIITNSLALLSDAGHMLSDSISLGVGLAAFIVGEKAVSRSKTFGYKRFEILAALFNGATLIAIALYIMYEAYQRFI-DPPDVASVGMLFIGFLGLLVNILVAWMLMSKG 143          
BLAST of NO24G01150 vs. NCBI_GenBank
Match: WP_077923914.1 (cation transporter [Spirosoma sp. 209])

HSP 1 Score: 67.4 bits (163), Expect = 9.500e-8
Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = 0
Query:    5 ELVVGVLSNSLGMLGDAGHMLADGREGGIAR----------TRRRKRG--RVGLWAGLINSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFLV 102
            E+VVG  +NSL +L DA HML D     +A           T RR  G  R+ + +  +N++ L+G++LY+L+EAY R     P V  +++   AF+GLLINVLGI+L+
Sbjct:   33 EVVVGYWTNSLALLSDAAHMLTDVIGLALALFANWMSRRPITARRSYGFYRLEILSAFVNALILIGISLYILFEAYGR-FRNPPTVDSSNMTLVAFVGLLINVLGIYLL 140          
BLAST of NO24G01150 vs. NCBI_GenBank
Match: WP_021346758.1 (cation transporter [Elizabethkingia anophelis] >EQB93851.1 cation transporter [Elizabethkingia anophelis 502])

HSP 1 Score: 67.0 bits (162), Expect = 1.200e-7
Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 0
Query:    4 AELVVGVLSNSLGMLGDAGHMLADG----------REGGIARTRRRKRG--RVGLWAGLINSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFLVHDLGALTQSSRGS 115
            AE++ G+++NSL +L DA HML D           R G    T  +  G  R  + A +IN++ L+G+++Y+LYEAY R L   PEV    +L  A +GLL+N+ GI ++      + + +G+
Sbjct:   32 AEVIGGIITNSLALLADAAHMLTDVVGLLLAYIAIRIGERKATSSKTFGYYRTEILAAVINAVVLLGISVYVLYEAYQRFL-NPPEVQSKAMLIVAGIGLLVNIAGIMILRKSSGDSLNMKGA 153          
BLAST of NO24G01150 vs. NCBI_GenBank
Match: WP_034848401.1 (cation transporter [Elizabethkingia anophelis] >AQW95857.1 cation transporter [Elizabethkingia anophelis] >OPB53633.1 cation transporter [Elizabethkingia anophelis])

HSP 1 Score: 67.0 bits (162), Expect = 1.200e-7
Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 0
Query:    4 AELVVGVLSNSLGMLGDAGHMLADG----------REGGIARTRRRKRG--RVGLWAGLINSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFLVHDLGALTQSSRGS 115
            AE++ G+++NSL +L DA HML D           R G    T  +  G  R  + A +IN++ L+G+++Y+LYEAY R L   PEV    +L  A +GLL+N+ GI ++      + + +G+
Sbjct:   32 AEVIGGIITNSLALLADAAHMLTDVVGLLLAYIAIRIGERKATSSKTFGYYRTEILAAVINAVVLLGISVYVLYEAYQRFL-NPPEVQSKAMLIVAGIGLLVNIAGIMILRKSSGDSLNMKGA 153          
BLAST of NO24G01150 vs. NCBI_GenBank
Match: ETI54621.1 (hypothetical protein F443_02589 [Phytophthora parasitica P1569])

HSP 1 Score: 66.6 bits (161), Expect = 1.600e-7
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 0
Query:    2 MGAELVVGVLSNSLGMLGDAGHMLADGREGGIARTR------------RRKRGRVGLWAGLINSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFLVHD 104
            M  EL VG+ +NSLG++GDAGHML D     I                    GRV + +G +NS+ L+ V+ +++ EA  R +   PEV   HLL T+  GL++N++G+F  HD
Sbjct:  357 MFVELAVGLYTNSLGLMGDAGHMLFDNGALVIGLVASYIGQLPPDAQFTYGYGRVEVLSGFLNSLLLLVVSFHLITEAASRFM-DPPEVTTDHLLLTSIAGLIVNLVGLFFFHD 469          
The following BLAST results are available for this feature:
BLAST of NO24G01150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OGW46597.16.600e-936.51hypothetical protein A2078_11425 [Nitrospirae bact... [more]
WP_046524687.11.900e-841.96cation transporter [Bacillus campisalis] >KKK37144... [more]
OGO19110.11.900e-844.25hypothetical protein A2144_00545 [Chloroflexi bact... [more]
OGW35933.15.600e-841.59hypothetical protein A2X58_12140 [Nitrospirae bact... [more]
WP_053362932.19.500e-841.07cation transporter [Bacillus sp. FJAT-27251][more]
WP_090925392.19.500e-835.34cation transporter [Salibacterium qingdaonense] >S... [more]
WP_077923914.19.500e-840.37cation transporter [Spirosoma sp. 209][more]
WP_021346758.11.200e-734.96cation transporter [Elizabethkingia anophelis] >EQ... [more]
WP_034848401.11.200e-734.96cation transporter [Elizabethkingia anophelis] >AQ... [more]
ETI54621.11.600e-737.72hypothetical protein F443_02589 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01150.2NO24G01150.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G01150.1NO24G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672670gene_7344Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01150.2NO24G01150.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G01150.1NO24G01150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01150 ID=NO24G01150|Name=NO24G01150|organism=Nannochloropsis oceanica|type=gene|length=2420bp
ATGATGGGAGCCGAGCTGGTCGTCGGCGTCCTCTCCAATAGTCTCGgtag
ggagggagggggaggaaggaagtgaaggagggatggagggaaaggtgaag
gaagcgatcgaacccaaaatataagagaagaaatgagcatacaaactccg
acgttcaccctcctcctccctccctccctccctccctccctgcctctccc
cccccccctgcagGCATGCTGGGCGACGCCGGCCACATGCTAgtggacaa
cgcctccctccttctcggcctctctgcctccctctatgcacacctccctc
ctccccctcctcctctccccctccttcccccctcgcttctccttgcacaa
gGCGGATGGGAGGGAGGGAGGGATTGCGAGGACAAGGAGGAGAAAGAGGG
GGAGGGTGGGGCTATGGGCTGGGCTTATCAATAGCATTACCCTCGTGGGC
GTCGCGCTCTATATGCTCTATGgtacaccctccctccctcccttcctccc
tctcccgtctcctcttgtcgcactatttcgtagtcacacactccttcctc
cttcccctcctcctcttccttccttccctccctcccttttttcttccctc
agAGGCCTACGATCGCATCCTCTACACGACGCCTGAGGTCGGTCACGCCC
ACCTCCTCCCTACGGCCTTCCTAGgtacccccctccctccctcctccttc
cctccctccctccctttctctctccctccatccctttaatttgttttcct
cctctcacacattcatcctccctccttcctttcttcccccctttccctga
ttctattattctccccgcttcgagtcttcctcttgggatcagacgtctca
tttctacctcctcccccttcctcccttcctccctccctccctccctccct
ccctaccgaagGACTCCTGATTAACGTCCTGGGTATTTTCCTAGTCCACG
ACCTCGGGGCACTCACACAGAGCAGCAGAGGCAGCAACAGCAGCACCAAC
AGCAGCACCAACAGTAGCAGCACCATCATCAGCAGCAGCAGTATCGGCAG
CAGTAGGATCGGCAGCAGCACCATCAGCAGCAGCAGAAGCAGTATTAGCA
GCAGTAGCAGTAGCAGCAGTAGCAGTAGCAGCACTTTCAGTCCCTCCCTC
CCTTCCCCCTCCCCTCTCTCTGATTTTAGGACGGAAAGCGGAAAAGGGGA
AGGGTGCTGTTCCCCCTCCCTTCCCTTGTATCCTCCCTCCCTTCCTCCAC
ATCACCATCACCACCACAAGAACAACCATCACTACAACGGGCAGCAGCAG
CAGCAGCAGCAGCAGTACCAGTGGCAGCCACAGCAGACACACTGCTGTGC
TCACGCCCACCTTGGAAGAGGAGGAGAGGATGAGGGAGTGGACGGGGAGG
ACGAAGCATGGAGAGACCTACTTCTCATGCCTCCTCCTCCTCCTCCGGCT
CATAACAGAAGGGAGGAAGGGGAGGAGGGAGGGAAAGAGGGGGACTTGTG
GGCGTCCGCCATGATGAAACTTGTACCCAATGCAGACGTCAACCTCCAGg
tagctttgtcgaccttccttcttccctccttccctcccttcctctctctc
ccccttcgtcatgctcctctctttttatgactctctcctttcctccccac
acaatagGGCCTTGTCCTCCACCTTCTCGCCGATGCCCTCGGCTCCCTCT
CCGTCCTCAgtgcgtccctccttccctccctccctctttccctccccatc
tccccgcatcctccctccttcccctcttcttgtcttcaccctctctcttc
tcatcgattctcctttcctccctcctttctccctccctccctcccaaagT
CTCCTCCCTCTTGATTCACATCAAGCAGTGGCACCTCTCCGACCCCCTCC
TTTCCGTCCTCGTCGCCCTCCTCGTCCTCGCTGCCGCCCTTCCCCACCTA
CACCGCTCCCTCTCCCTCCTCTTCTTCACCCCAGCCCTCCCTCCCGCCTT
CCATCGGGCCCTTGGCGTGTGCCGGGCAGAGGTGCAGGCCTCCCTCCCCC
TTCCCTCATCCTCCTTCGCTTCCTCTCTCGACTGGACGAGGACGGTCGAT
TTTTCCTGTCCATCGTTTTGGTAGAGGAGAGGGATGAGGGAGGGACGGAG
GAAGGGGTTGTTGAGGAGGGTGGGAGGGAGGGGGGAGAGAGGAAGGTGTA
AGGCGTGTGGTTTTCCGGCATTTGGAGAAGGAGAGGACGGAGTTGACCAT
CGACATTCACAGGAGAAGGAAAGGAGAGAGATAGGGGGCAAATGGAGGGA
AGGAAGGAGAGAGTGCCCTGTGAAGAGGAAGGAGGGAGGGAGGGAGGGAA
GGGCTGAAGAAAAGTAAGGAACTAGGAACAGGAAATAGACGAGAAATGAA
AGAACAAATTTACATGATCC
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protein sequence of NO24G01150.2

>NO24G01150.2-protein ID=NO24G01150.2-protein|Name=NO24G01150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MMGAELVVGVLSNSLGMLGDAGHMLADGREGGIARTRRRKRGRVGLWAGL
INSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFL
VHDLGALTQSSRGSNSSTNSSTNSSSTIISSSSIGSSRIGSSTISSSRSS
ISSSSSSSSSSSSTFSPSLPSPSPLSDFRTESGKGEGCCSPSLPLYPPSL
PPHHHHHHKNNHHYNGQQQQQQQQYQWQPQQTHCCAHAHLGRGGEDEGVD
GEDEAWRDLLLMPPPPPPAHNRREEGEEGGKEGDLWASAMMKLVPNADVN
LQVALSTFLLPSFPPFLSLPLRHAPLFL*
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protein sequence of NO24G01150.1

>NO24G01150.1-protein ID=NO24G01150.1-protein|Name=NO24G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MMGAELVVGVLSNSLGMLGDAGHMLADGREGGIARTRRRKRGRVGLWAGL
INSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFL
VHDLGALTQSSRGSNSSTNSSTNSSSTIISSSSIGSSRIGSSTISSSRSS
ISSSSSSSSSSSSTFSPSLPSPSPLSDFRTESGKGEGCCSPSLPLYPPSL
PPHHHHHHKNNHHYNGQQQQQQQQYQWQPQQTHCCAHAHLGRGGEDEGVD
GEDEAWRDLLLMPPPPPPAHNRREEGEEGGKEGDLWASAMMKLVPNADVN
LQGLVLHLLADALGSLSVLISSLLIHIKQWHLSDPLLSVLVALLVLAAAL
PHLHRSLSLLFFTPALPPAFHRALGVCRAEVQASLPLPSSSFASSLDWTR
TVDFSCPSFW*
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Synonyms
Publications