NO24G01150.2, NO24G01150.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01150.2
Unique NameNO24G01150.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1637
Alignment locationchr24:318607..321026 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:318607..321026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01150.2 vs.
Match: WP_046524687.1 (cation transporter [Bacillus campisalis]; KKK37144.1 zinc transporter ZitB [Bacillus campisalis])

HSP 1 Score: 70.1 bits (170), Expect = 1.500e-8
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 0 
Query:    2 MGAELVVGVLSNSLGMLGDAGHMLADGREGGI----------ARTRRRKRG--RVGLWAGLINSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFLV 102
            M  ELV G+L+NSL +L DAGHML+D    G+          A T  +  G  R  + A +IN  TL+ ++LY+ YEAY RIL   PEV    +L  AF+GLL+N+L  +++
Sbjct:   36 MFVELVGGLLTNSLALLSDAGHMLSDAAALGLSLFAIKLGEKAATSSKTFGYKRFEILAAMINGATLIIISLYIFYEAYHRIL-QPPEVQSLGMLLIAFIGLLVNILAAWIL 146
The following BLAST results are available for this feature:
BLAST of NO24G01150.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600SequenceWP_046524687.1
Match NameE-valueIdentityDescription
WP_046524687.11.500e-841.96cation transporter [Bacillus campisalis]; KKK37144... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01150NO24G01150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01150.2NO24G01150.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01150.2.cds1NO24G01150.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01150.2.cds2NO24G01150.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01150.2.cds3NO24G01150.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01150.2.cds4NO24G01150.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01150.2.cds5NO24G01150.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01150.2 ID=NO24G01150.2|Name=NO24G01150.2|organism=Nannochloropsis oceanica|type=mRNA|length=1637bp
ATGATGGGAGCCGAGCTGGTCGTCGGCGTCCTCTCCAATAGTCTCGGCAT
GCTGGGCGACGCCGGCCACATGCTAGCGGATGGGAGGGAGGGAGGGATTG
CGAGGACAAGGAGGAGAAAGAGGGGGAGGGTGGGGCTATGGGCTGGGCTT
ATCAATAGCATTACCCTCGTGGGCGTCGCGCTCTATATGCTCTATGAGGC
CTACGATCGCATCCTCTACACGACGCCTGAGGTCGGTCACGCCCACCTCC
TCCCTACGGCCTTCCTAGGACTCCTGATTAACGTCCTGGGTATTTTCCTA
GTCCACGACCTCGGGGCACTCACACAGAGCAGCAGAGGCAGCAACAGCAG
CACCAACAGCAGCACCAACAGTAGCAGCACCATCATCAGCAGCAGCAGTA
TCGGCAGCAGTAGGATCGGCAGCAGCACCATCAGCAGCAGCAGAAGCAGT
ATTAGCAGCAGTAGCAGTAGCAGCAGTAGCAGTAGCAGCACTTTCAGTCC
CTCCCTCCCTTCCCCCTCCCCTCTCTCTGATTTTAGGACGGAAAGCGGAA
AAGGGGAAGGGTGCTGTTCCCCCTCCCTTCCCTTGTATCCTCCCTCCCTT
CCTCCACATCACCATCACCACCACAAGAACAACCATCACTACAACGGGCA
GCAGCAGCAGCAGCAGCAGCAGTACCAGTGGCAGCCACAGCAGACACACT
GCTGTGCTCACGCCCACCTTGGAAGAGGAGGAGAGGATGAGGGAGTGGAC
GGGGAGGACGAAGCATGGAGAGACCTACTTCTCATGCCTCCTCCTCCTCC
TCCGGCTCATAACAGAAGGGAGGAAGGGGAGGAGGGAGGGAAAGAGGGGG
ACTTGTGGGCGTCCGCCATGATGAAACTTGTACCCAATGCAGACGTCAAC
CTCCAGGTAGCTTTGTCGACCTTCCTTCTTCCCTCCTTCCCTCCCTTCCT
CTCTCTCCCCCTTCGTCATGCTCCTCTCTTTTTATGACTCTCTCCTTTCC
TCCCCACACAATAGGGCCTTGTCCTCCACCTTCTCGCCGATGCCCTCGGC
TCCCTCTCCGTCCTCATCTCCTCCCTCTTGATTCACATCAAGCAGTGGCA
CCTCTCCGACCCCCTCCTTTCCGTCCTCGTCGCCCTCCTCGTCCTCGCTG
CCGCCCTTCCCCACCTACACCGCTCCCTCTCCCTCCTCTTCTTCACCCCA
GCCCTCCCTCCCGCCTTCCATCGGGCCCTTGGCGTGTGCCGGGCAGAGGT
GCAGGCCTCCCTCCCCCTTCCCTCATCCTCCTTCGCTTCCTCTCTCGACT
GGACGAGGACGGTCGATTTTTCCTGTCCATCGTTTTGGTAGAGGAGAGGG
ATGAGGGAGGGACGGAGGAAGGGGTTGTTGAGGAGGGTGGGAGGGAGGGG
GGAGAGAGGAAGGTGTAAGGCGTGTGGTTTTCCGGCATTTGGAGAAGGAG
AGGACGGAGTTGACCATCGACATTCACAGGAGAAGGAAAGGAGAGAGATA
GGGGGCAAATGGAGGGAAGGAAGGAGAGAGTGCCCTGTGAAGAGGAAGGA
GGGAGGGAGGGAGGGAAGGGCTGAAGAAAAGTAAGGAACTAGGAACAGGA
AATAGACGAGAAATGAAAGAACAAATTTACATGATCC
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protein sequence of NO24G01150.2

>NO24G01150.2-protein ID=NO24G01150.2-protein|Name=NO24G01150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MMGAELVVGVLSNSLGMLGDAGHMLADGREGGIARTRRRKRGRVGLWAGL
INSITLVGVALYMLYEAYDRILYTTPEVGHAHLLPTAFLGLLINVLGIFL
VHDLGALTQSSRGSNSSTNSSTNSSSTIISSSSIGSSRIGSSTISSSRSS
ISSSSSSSSSSSSTFSPSLPSPSPLSDFRTESGKGEGCCSPSLPLYPPSL
PPHHHHHHKNNHHYNGQQQQQQQQYQWQPQQTHCCAHAHLGRGGEDEGVD
GEDEAWRDLLLMPPPPPPAHNRREEGEEGGKEGDLWASAMMKLVPNADVN
LQVALSTFLLPSFPPFLSLPLRHAPLFL*
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mRNA from alignment at chr24:318607..321026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01150.2 ID=NO24G01150.2|Name=NO24G01150.2|organism=Nannochloropsis oceanica|type=mRNA|length=2420bp|location=Sequence derived from alignment at chr24:318607..321026- (Nannochloropsis oceanica)
ATGATGGGAGCCGAGCTGGTCGTCGGCGTCCTCTCCAATAGTCTCGGTAG
GGAGGGAGGGGGAGGAAGGAAGTGAAGGAGGGATGGAGGGAAAGGTGAAG
GAAGCGATCGAACCCAAAATATAAGAGAAGAAATGAGCATACAAACTCCG
ACGTTCACCCTCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTCTCCC
CCCCCCCCTGCAGGCATGCTGGGCGACGCCGGCCACATGCTAGTGGACAA
CGCCTCCCTCCTTCTCGGCCTCTCTGCCTCCCTCTATGCACACCTCCCTC
CTCCCCCTCCTCCTCTCCCCCTCCTTCCCCCCTCGCTTCTCCTTGCACAA
GGCGGATGGGAGGGAGGGAGGGATTGCGAGGACAAGGAGGAGAAAGAGGG
GGAGGGTGGGGCTATGGGCTGGGCTTATCAATAGCATTACCCTCGTGGGC
GTCGCGCTCTATATGCTCTATGGTACACCCTCCCTCCCTCCCTTCCTCCC
TCTCCCGTCTCCTCTTGTCGCACTATTTCGTAGTCACACACTCCTTCCTC
CTTCCCCTCCTCCTCTTCCTTCCTTCCCTCCCTCCCTTTTTTCTTCCCTC
AGAGGCCTACGATCGCATCCTCTACACGACGCCTGAGGTCGGTCACGCCC
ACCTCCTCCCTACGGCCTTCCTAGGTACCCCCCTCCCTCCCTCCTCCTTC
CCTCCCTCCCTCCCTTTCTCTCTCCCTCCATCCCTTTAATTTGTTTTCCT
CCTCTCACACATTCATCCTCCCTCCTTCCTTTCTTCCCCCCTTTCCCTGA
TTCTATTATTCTCCCCGCTTCGAGTCTTCCTCTTGGGATCAGACGTCTCA
TTTCTACCTCCTCCCCCTTCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCT
CCCTACCGAAGGACTCCTGATTAACGTCCTGGGTATTTTCCTAGTCCACG
ACCTCGGGGCACTCACACAGAGCAGCAGAGGCAGCAACAGCAGCACCAAC
AGCAGCACCAACAGTAGCAGCACCATCATCAGCAGCAGCAGTATCGGCAG
CAGTAGGATCGGCAGCAGCACCATCAGCAGCAGCAGAAGCAGTATTAGCA
GCAGTAGCAGTAGCAGCAGTAGCAGTAGCAGCACTTTCAGTCCCTCCCTC
CCTTCCCCCTCCCCTCTCTCTGATTTTAGGACGGAAAGCGGAAAAGGGGA
AGGGTGCTGTTCCCCCTCCCTTCCCTTGTATCCTCCCTCCCTTCCTCCAC
ATCACCATCACCACCACAAGAACAACCATCACTACAACGGGCAGCAGCAG
CAGCAGCAGCAGCAGTACCAGTGGCAGCCACAGCAGACACACTGCTGTGC
TCACGCCCACCTTGGAAGAGGAGGAGAGGATGAGGGAGTGGACGGGGAGG
ACGAAGCATGGAGAGACCTACTTCTCATGCCTCCTCCTCCTCCTCCGGCT
CATAACAGAAGGGAGGAAGGGGAGGAGGGAGGGAAAGAGGGGGACTTGTG
GGCGTCCGCCATGATGAAACTTGTACCCAATGCAGACGTCAACCTCCAGG
TAGCTTTGTCGACCTTCCTTCTTCCCTCCTTCCCTCCCTTCCTCTCTCTC
CCCCTTCGTCATGCTCCTCTCTTTTTATGACTCTCTCCTTTCCTCCCCAC
ACAATAGGGCCTTGTCCTCCACCTTCTCGCCGATGCCCTCGGCTCCCTCT
CCGTCCTCAGTGCGTCCCTCCTTCCCTCCCTCCCTCTTTCCCTCCCCATC
TCCCCGCATCCTCCCTCCTTCCCCTCTTCTTGTCTTCACCCTCTCTCTTC
TCATCGATTCTCCTTTCCTCCCTCCTTTCTCCCTCCCTCCCTCCCAAAGT
CTCCTCCCTCTTGATTCACATCAAGCAGTGGCACCTCTCCGACCCCCTCC
TTTCCGTCCTCGTCGCCCTCCTCGTCCTCGCTGCCGCCCTTCCCCACCTA
CACCGCTCCCTCTCCCTCCTCTTCTTCACCCCAGCCCTCCCTCCCGCCTT
CCATCGGGCCCTTGGCGTGTGCCGGGCAGAGGTGCAGGCCTCCCTCCCCC
TTCCCTCATCCTCCTTCGCTTCCTCTCTCGACTGGACGAGGACGGTCGAT
TTTTCCTGTCCATCGTTTTGGTAGAGGAGAGGGATGAGGGAGGGACGGAG
GAAGGGGTTGTTGAGGAGGGTGGGAGGGAGGGGGGAGAGAGGAAGGTGTA
AGGCGTGTGGTTTTCCGGCATTTGGAGAAGGAGAGGACGGAGTTGACCAT
CGACATTCACAGGAGAAGGAAAGGAGAGAGATAGGGGGCAAATGGAGGGA
AGGAAGGAGAGAGTGCCCTGTGAAGAGGAAGGAGGGAGGGAGGGAGGGAA
GGGCTGAAGAAAAGTAAGGAACTAGGAACAGGAAATAGACGAGAAATGAA
AGAACAAATTTACATGATCC
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Coding sequence (CDS) from alignment at chr24:318607..321026-

>NO24G01150.2 ID=NO24G01150.2|Name=NO24G01150.2|organism=Nannochloropsis oceanica|type=CDS|length=987bp|location=Sequence derived from alignment at chr24:318607..321026- (Nannochloropsis oceanica)
ATGATGGGAGCCGAGCTGGTCGTCGGCGTCCTCTCCAATAGTCTCGGCAT
GCTGGGCGACGCCGGCCACATGCTAGCGGATGGGAGGGAGGGAGGGATTG
CGAGGACAAGGAGGAGAAAGAGGGGGAGGGTGGGGCTATGGGCTGGGCTT
ATCAATAGCATTACCCTCGTGGGCGTCGCGCTCTATATGCTCTATGAGGC
CTACGATCGCATCCTCTACACGACGCCTGAGGTCGGTCACGCCCACCTCC
TCCCTACGGCCTTCCTAGGACTCCTGATTAACGTCCTGGGTATTTTCCTA
GTCCACGACCTCGGGGCACTCACACAGAGCAGCAGAGGCAGCAACAGCAG
CACCAACAGCAGCACCAACAGTAGCAGCACCATCATCAGCAGCAGCAGTA
TCGGCAGCAGTAGGATCGGCAGCAGCACCATCAGCAGCAGCAGAAGCAGT
ATTAGCAGCAGTAGCAGTAGCAGCAGTAGCAGTAGCAGCACTTTCAGTCC
CTCCCTCCCTTCCCCCTCCCCTCTCTCTGATTTTAGGACGGAAAGCGGAA
AAGGGGAAGGGTGCTGTTCCCCCTCCCTTCCCTTGTATCCTCCCTCCCTT
CCTCCACATCACCATCACCACCACAAGAACAACCATCACTACAACGGGCA
GCAGCAGCAGCAGCAGCAGCAGTACCAGTGGCAGCCACAGCAGACACACT
GCTGTGCTCACGCCCACCTTGGAAGAGGAGGAGAGGATGAGGGAGTGGAC
GGGGAGGACGAAGCATGGAGAGACCTACTTCTCATGCCTCCTCCTCCTCC
TCCGGCTCATAACAGAAGGGAGGAAGGGGAGGAGGGAGGGAAAGAGGGGG
ACTTGTGGGCGTCCGCCATGATGAAACTTGTACCCAATGCAGACGTCAAC
CTCCAGGTAGCTTTGTCGACCTTCCTTCTTCCCTCCTTCCCTCCCTTCCT
CTCTCTCCCCCTTCGTCATGCTCCTCTCTTTTTATGA
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Synonyms
Publications