NO24G01130, NO24G01130 (gene) Nannochloropsis oceanica

Overview
NameNO24G01130
Unique NameNO24G01130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2549
Alignment locationchr24:313488..316036 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:313488..316036 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
Vocabulary: Molecular Function
TermDefinition
GO:0061630ubiquitin protein ligase activity
GO:0016874ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO24G01130 vs. NCBI_GenBank
Match: PRW57917.1 (E3 ubiquitin- ligase RNF25 [Chlorella sorokiniana])

HSP 1 Score: 74.7 bits (182), Expect = 8.700e-10
Identity = 51/148 (34.46%), Postives = 68/148 (45.95%), Query Frame = 0 
Query:   63 EELVQARLVLVLDKTSYPSLPPAFSLPFTPGLGDDEVAQVHSRITNVWRGLYGEREXXXXXXXXXXXXXLGCLPLLEAATDALDELNQ-KVVCSICLMPLLGR-EGGGEGGVMRTE----GCYHCFHVGCLAEW--WARRERADREGR 203
            E+ V  RLV+ +    YP+ PPA  L    G+GD  +A + S +      + GE +             LG   L E A D L   NQ +  C+ CL PLLG+ +  G GG  R       CYHC+H  C A W  W +R  A RE +
Sbjct:  286 EQFVAGRLVMAVG-AGYPAEPPAVQLADAKGMGDARLAGIQSSLAAEAASMAGELQ-------------LG--HLCETALDLLTAANQPEGDCAFCLEPLLGQADSNGRGGRSRLPVVRLACYHCYHTACFAPWWQWQQRRSAQREAQ 417
The following BLAST results are available for this feature:
BLAST of NO24G01130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
PRW57917.18.700e-1034.46E3 ubiquitin- ligase RNF25 [Chlorella sorokiniana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01130.1NO24G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598363gene_7341Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01130.1NO24G01130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01130 ID=NO24G01130|Name=NO24G01130|organism=Nannochloropsis oceanica|type=gene|length=2549bp
ATGAATGACGCCGTCGCCACGGAGCTGGAGCTATTGCGTGGCATTTTTTA
CGACGATGGCTTGCTAATCGAGGAGAGGTCATCGGAGGAGGAGGAGGACG
GCAGCGGCGGTGGAAATGGGGAAAAAGAGgcaaggttttgtccatcaggg
gtcaacattcctttttattttacacttaccactcttcatccgctatttgc
tccagggatctcatacccccatcatccgtttaccctcccttcctcactct
ctcctgcctttccctctacccaagcaaccaaatcaagatttcctttatct
gtcaatcacgcaccaaaaatcccctccctccaatatttcctctcttcgtt
tccctctctctcactcctccttccctcttacagAAAGACCTCGTCGAGAT
CTCCCTACTCTGTCGGCCACGCACGGCCGGCCGCGTCGAAGAGGAGTTGG
TTCAAGCCCGACTGGTGCTAGTGCTGGATAAGgtaaggagggatggagga
aggaatggatagatggagggaacgggtgttagtgtggacgtgcttgctgt
ttcaagacgcattcattcctctcttctaatctccccttcttcttccctcc
ctccctctccccccccttctcctccctcccttcctccctcccgtctgtcc
ggcctctccatgctcccagACCAGCTATCCCTCCCTCCCTCCCGCCTTCT
CCCTCCCCTTCACCCCCGGCCTGGGCGACGACGAGGTAGCCCAGGTGCAT
TCGAGGATAACCAACGTGTGGCGCGGCCTTTATGGAGAGAGGGAGGGCGA
GGAGGGGAAGGAGGAAGGGGAGGAGGAAGGGGTCCTGGGCTGCTTGCCTT
TATTGGAGGCAGCCACAGACGCGCTGGACGAGTTGAATCAAAAAGTCGTG
TGTTCGATATGCCTCATGCCCCTGCTAGGAAGGGAGGGCGGGGGGGAGGG
AGGGGTGATGAGGACGGAGGGGTGCTATCACTGCTTTCATGTGGGATGTC
TGGCCGAATGGTGGGCAAGGAGGGAGAGGGCGGATAGGGAGGGCAGAAAG
GAGGGAGGAGGTGGAGGAGTGTGGGGGGGACGGGTGCAGACTCTGCAGgt
gaggaaggagggaaggagggaaggagggaagaaggaaaggagcgtggatg
tcgtctgtgccaccgccttgcattcatgcacttgcccccctttcttccct
cttcaaccaaccagCGCCTTCTCGCCCGGCGACGTGGAGAGAAGGAGGAG
GAGGAGCACGCCCTTTGCGTCTGTCAGTCCCGCTTGGACGAGGTTGCCGC
CTTCCTCCTCAGgtgcgattctcgtactccctgcccccccttcccccttg
ctatcactcacgaggacacgcccctcgtccgcccccctcctctccccctc
cttccctccgttcattacttcgccccccctcttccagCCCTGACCTCGAC
AGCGAAATCCGCAGCGCCTTTCAAAAGGACCTCTCGGAGGAAGAGAGGCG
GAAACGACAGCTCCGTCTCGCCATTAAATCCACTGGCACCAAAGTGCTTC
AGgtacgccctccctccctccctcccaccagtcattcttgtcgctcacca
tccacccctccctccctttctcccttcctctctttctcccgccctccctc
tctctctccctcagACCCAGCGGGAGCTAGCAGAAGCAGAGGCGGCGTGG
CGGGAGGCCGAGGCCGCGAAGGGACTGCAGCGGGCGATTCCGTGTTGTGT
GTGTCGGCGTCCTTTGCGACTAGgtgagtgacatggcaatgccgagccgc
ataggatgggggtgtcgtcgccctctgctctcataaaaaggctgctagct
ccctcccttcatccctccctcactaaagaaccattccctccgttcctccc
tgcgtccctccctcttaagTCGACATGCCTCCTCGCCTGGTAGAGGCCAT
TGAGATGCTCGAAGGAAGAGCACGAGGGGATGAGGGAGGGGAGGAGGGAG
GGAGAAAAGGAGGAAGGGAGGAAGCTACGCTCGAGCTGTCGGAGTCTGCC
GGTCTCCCGCCTTCCCTCCTAAGCGATCGGGAGAAGCAAGAGATGCGAGG
GTACATTGAGgtgagaaggagggagggagggaaggagggaaggagggagg
gagggaaggagaaagttttttggggagtgcaaagcacattccaccggcat
gaacctgaccatcatccttcccaccttgtcatcctcccttcctctctctc
tcttactgcttctttcacagGGGATGAGTGAGGAAAGCAGCGCCATGGTG
TCAAGGCTGAGGGCGTTGCTGGAAGAGAGGGGAAAGAAGGAAAAGGAGAG
GGAGGAGGAGGAGCGAGGGAGGGAGGGAGAGCGAGAAGAAGCGAATGCGG
AGGACTCGGTGGAGACAGAGACTAGAATAGCGCACGAGGGAGGGGGCGGG
CAAGAGAGGGAGAGAGGGGAAGGGTCCTGGGGAGGCTGGAGAAGAGGCGG
AAGGGGAGGAAGAAGGGGGGAGGAGGAGGCGGAGAGGAAGGAGGAATAA
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protein sequence of NO24G01130.1

>NO24G01130.1-protein ID=NO24G01130.1-protein|Name=NO24G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MNDAVATELELLRGIFYDDGLLIEERSSEEEEDGSGGGNGEKEKDLVEIS
LLCRPRTAGRVEEELVQARLVLVLDKTSYPSLPPAFSLPFTPGLGDDEVA
QVHSRITNVWRGLYGEREGEEGKEEGEEEGVLGCLPLLEAATDALDELNQ
KVVCSICLMPLLGREGGGEGGVMRTEGCYHCFHVGCLAEWWARRERADRE
GRKEGGGGGVWGGRVQTLQRLLARRRGEKEEEEHALCVCQSRLDEVAAFL
LSPDLDSEIRSAFQKDLSEEERRKRQLRLAIKSTGTKVLQTQRELAEAEA
AWREAEAAKGLQRAIPCCVCRRPLRLVDMPPRLVEAIEMLEGRARGDEGG
EEGGRKGGREEATLELSESAGLPPSLLSDREKQEMRGYIEGMSEESSAMV
SRLRALLEERGKKEKEREEEERGREGEREEANAEDSVETETRIAHEGGGG
QERERGEGSWGGWRRGGRGGRRGEEEAERKEE*
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Synonyms
Publications